Rh7BG360400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001780
Physical Location & Seq
Reverse (-)
38079077 .. 38090961
11885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG360400.1

Sequence Viewer

Length: 336 bp
ATGGGTGTAAGGGGGCTCTATGAGAAGGCCCAGGAGATATTGATGAAAGAAAGCAATGTTCAGCGTCTAGGCAGCAATGCTGCCAGCACTCTCTTCTTCATCCACCGCATAGTTGATATTTGTGATGATTGTATCAACCACCACCTTTCAAGTGGCCATGCTGGTCATAGTAATGGGGTTTCAGTTCCAGCTGGAAACCTGGGAATTCCTAGCACTGATGTTAATGCCATTCCCAGTGATTTCATAATTCCTCCTGCCGGTTTTGATGGTGTACAGAATGACATAAGAATGCCAACAGCCACCTATACAAATGAGCAGGCTAGGACAATAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.92

Weight (kDa)

5.59

Isoelectric Point (pI)

28.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 204
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 150
AjnI CCWGG 2 cut(s) 30, 198
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
AoxI GGCC 2 cut(s) 27, 154
ApeKI GCWGC 2 cut(s) 72, 80
ApoI RAATTY 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 156
BanII GRGCYC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 67, 84
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 32, 200
BfaI CTAG 3 cut(s) 68, 210, 321
BisI GCNGC 2 cut(s) 73, 81
BlsI GCNGC 2 cut(s) 74, 82
Bme1390I CCNGG 2 cut(s) 32, 200
BmgT120I GGNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 32, 200
BmrI ACTGGG 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 30, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 234
Bse3DI GCAATG 2 cut(s) 61, 82
BseBI CCWGG 2 cut(s) 32, 200
BseDI CCNNGG 2 cut(s) 30, 199
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 2 cut(s) 61, 82
BseNI ACTGG 1 cut(s) 234
BseXI GCAGC 2 cut(s) 67, 84
BshFI GGCC 2 cut(s) 29, 156
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 257
BsmI GAATGC 1 cut(s) 294
BsnI GGCC 2 cut(s) 29, 156
Bsp1286I GDGCHC 1 cut(s) 18
Bsp1407I TGTACA 1 cut(s) 271
BspACI CCGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 29, 156
BsrDI GCAATG 2 cut(s) 61, 82
BsrFI RCCGGY 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 1 cut(s) 234
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 30, 199
Bst2UI CCWGG 2 cut(s) 32, 200
Bst6I CTCTTC 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 85, 318
BstF5I GGATG 1 cut(s) 99
BstNI CCWGG 2 cut(s) 32, 200
BstSCI CCNGG 2 cut(s) 30, 198
BstV1I GCAGC 2 cut(s) 67, 84
BsuRI GGCC 2 cut(s) 29, 156
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 213, 241
Cac8I GCNNGC 2 cut(s) 85, 318
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 28
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 272
CviAII CATG 1 cut(s) 158
CviJI RGCY 6 cut(s) 16, 29, 156, 191, 299, 320
CviKI_1 RGCY 6 cut(s) 16, 29, 156, 191, 299, 320
CviQI GTAC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 30, 198
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 1 cut(s) 161
FaiI YATR 7 cut(s) 21, 110, 159, 168, 245, 284, 306
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 73, 81
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 73, 81
FspBI CTAG 3 cut(s) 68, 210, 321
GluI GCNGC 2 cut(s) 73, 81
HaeIII GGCC 2 cut(s) 29, 156
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 53
Hin1II CATG 1 cut(s) 161
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 19
Hsp92II CATG 1 cut(s) 161
Lsp1109I GCAGC 2 cut(s) 67, 84
MaeI CTAG 3 cut(s) 68, 210, 321
MboII GAAGA 2 cut(s) 85, 88
MhlI GDGCHC 1 cut(s) 18
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 3 cut(s) 204, 246, 330
MluNI TGGCCA 1 cut(s) 156
MnlI CCTC 1 cut(s) 261
Mox20I TGGCCA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 156
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 2 cut(s) 171, 287
Msp20I TGGCCA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 32, 200
Mva1269I GAATGC 1 cut(s) 294
MvaI CCWGG 2 cut(s) 32, 200
NlaIII CATG 1 cut(s) 161
PctI GAATGC 1 cut(s) 294
PkrI GCNGC 2 cut(s) 74, 82
Psp6I CCWGG 2 cut(s) 30, 198
PspGI CCWGG 2 cut(s) 30, 198
PspPI GGNCC 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 2 cut(s) 171, 287
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 73, 81
Sau96I GGNCC 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 32, 200
SduI GDGCHC 1 cut(s) 18
SetI ASST 4 cut(s) 147, 193, 201, 305
SmiMI CAYNNNNRTG 2 cut(s) 171, 287
Sse9I AATT 3 cut(s) 204, 246, 330
SsiI CCGC 1 cut(s) 106
SspMI CTAG 3 cut(s) 68, 210, 321
StyD4I CCNGG 2 cut(s) 30, 198
TasI AATT 3 cut(s) 204, 246, 330
TatI WGTACW 1 cut(s) 271
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 2 cut(s) 220, 241
TseI GCWGC 2 cut(s) 72, 80
TspDTI ATGAA 3 cut(s) 59, 88, 232
TspRI CASTG 2 cut(s) 220, 241
XapI RAATTY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XspI CTAG 3 cut(s) 68, 210, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.