Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Reverse (-)

10336790 .. 10337828

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14310.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTTTCAGGGGCAACAGGGAACCATGCTACGCCGTTTCCATCATGGTGAATGGGAAACGGGATGGTTATCGCCTACCCGTCACGGCTCAGAACCACCCTTTGAAGCGGATTTGCTCGACCCTTATTCGGTCTTTTCTGGTAATCCTTATACCTACAATCAATGGACTGGCCTTCCCGTACCCAGCGAGGTATTTCCTTCGAATCCTTCCCGGATTGACTGGGGACCCGAACCTTTAATTTGTGATAGCTTTACTAATTTGTTTTCAACTGGTGACTATACCGGCGGTGCTAATTGGTCTTCATATCCATCGGCAACCTTGAGTTCCGGGATTGATTATATTGGCATGCCAAATGCACCATTGATTCCTCGAGTTGTTGAGGGCGGTTATGAATCCCCATTTGGTTTGGCTTATCAAGGAAGCAATGATCCCCCTCATCCCAACTTCCCAATGATGCAGCAGCTGCCAACCAATTTCCCTTCACAAGCGGCGCATACTTCCATGGGAAGATCAAATGACTTGATGCACTGGCTTCGGGCAGGGCATACAACAACTTCACTTGGACAGACTGCAGACTCCATTCCATTTTCTGTGAACATGAACTCTAGCCTGTCATCAGCAACCAACGGTCATCACCTTGTCCAGGAAGGAAACGGGGTCCAACCTCAACGACTGTTTCCAGAAGATGCCGGTTCTTTAACTTCTTTTTTCCCCGACGTAAATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

243

Amino Acids

26.51

Weight (kDa)

4.83

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	107, 285, 384, 488
AclWI	GGATC	1 cut(s)	422
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	127, 643
AgsI	TTSAA	2 cut(s)	104, 267
AjnI	CCWGG	1 cut(s)	642
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	2 cut(s)	249, 463
AluI	AGCT	2 cut(s)	249, 463
AlwI	GGATC	1 cut(s)	422
AlwNI	CAGNNNCTG	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	3 cut(s)	457, 460, 463
AspLEI	GCGC	1 cut(s)	493
AspS9I	GGNCC	2 cut(s)	224, 658
AsuC2I	CCSGG	2 cut(s)	211, 328
AsuHPI	GGTGA	3 cut(s)	59, 284, 626
AsuII	TTCGAA	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	2 cut(s)	224, 658
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	450, 469, 472
BccI	CCATC	3 cut(s)	48, 57, 316
BceAI	ACGGC	2 cut(s)	18, 100
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	1 cut(s)	644
BcnI	CCSGG	2 cut(s)	211, 328
BfaI	CTAG	1 cut(s)	606
BfmI	CTRYAG	1 cut(s)	570
BisI	GCNGC	4 cut(s)	458, 461, 464, 489
BlsI	GCNGC	4 cut(s)	459, 462, 465, 490
Bme1390I	CCNGG	3 cut(s)	211, 328, 644
Bme18I	GGWCC	2 cut(s)	224, 658
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	2 cut(s)	224, 658
BmiI	GGNNCC	4 cut(s)	22, 225, 226, 659
BmrFI	CCNGG	3 cut(s)	211, 328, 644
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	3 cut(s)	444, 513, 676
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	340
BpuMI	CCSGG	2 cut(s)	211, 328
BsaBI	GATNNNNATC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 643
Bse118I	RCCGGY	2 cut(s)	281, 689
Bse1I	ACTGG	4 cut(s)	172, 224, 274, 533
Bse3DI	GCAATG	1 cut(s)	430
Bse8I	GATNNNNATC	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	2 cut(s)	68, 436
BseJI	GATNNNNATC	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	127, 643
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	4 cut(s)	172, 224, 274, 533
BseXI	GCAGC	3 cut(s)	450, 469, 472
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	4 cut(s)	211, 282, 327, 690
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	127, 643
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	200
Bsp143I	GATC	2 cut(s)	427, 509
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	4 cut(s)	107, 285, 384, 488
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	101
BspLI	GGNNCC	4 cut(s)	22, 225, 226, 659
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	422
BspT104I	TTCGAA	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	430
BsrFI	RCCGGY	2 cut(s)	281, 689
BsrI	ACTGG	4 cut(s)	172, 224, 274, 533
BssAI	RCCGGY	2 cut(s)	281, 689
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	2 cut(s)	427, 509
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	2 cut(s)	629, 675
BstAPI	GCANNNNNTGC	1 cut(s)	463
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	501
BstENI	CCTNNNNNAGG	1 cut(s)	641
BstF5I	GGATG	2 cut(s)	68, 436
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	2 cut(s)	430, 512
BstMBI	GATC	2 cut(s)	427, 509
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	644
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	3 cut(s)	209, 326, 642
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	450, 469, 472
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	2 cut(s)	68, 436
BtsIMutI	CAGTG	1 cut(s)	526
Cac8I	GCNNGC	1 cut(s)	347
CaiI	CAGNNNCTG	1 cut(s)	463
CfoI	GCGC	1 cut(s)	493
Cfr10I	RCCGGY	2 cut(s)	281, 689
Cfr13I	GGNCC	2 cut(s)	224, 658
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	5 cut(s)	25, 44, 346, 502, 598
CviJI	RGCY	7 cut(s)	87, 171, 249, 410, 463, 532, 609
CviKI_1	RGCY	7 cut(s)	87, 171, 249, 410, 463, 532, 609
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	2 cut(s)	429, 511
DpnII	GATC	2 cut(s)	427, 509
Eco130I	CCWWGG	1 cut(s)	501
Eco47I	GGWCC	2 cut(s)	224, 658
Eco88I	CYCGRG	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	5 cut(s)	28, 47, 349, 505, 601
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	5 cut(s)	24, 43, 345, 501, 597
Fnu4HI	GCNGC	4 cut(s)	458, 461, 464, 489
FokI	GGATG	2 cut(s)	75, 423
Fsp4HI	GCNGC	4 cut(s)	458, 461, 464, 489
FspBI	CTAG	1 cut(s)	606
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	4 cut(s)	458, 461, 464, 489
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	4 cut(s)	211, 282, 327, 690
HhaI	GCGC	1 cut(s)	493
Hin1II	CATG	5 cut(s)	28, 47, 349, 505, 601
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HinfI	GANTC	4 cut(s)	202, 364, 392, 575
HpaII	CCGG	4 cut(s)	211, 282, 327, 690
HphI	GGTGA	3 cut(s)	59, 284, 626
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	680
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	5 cut(s)	182, 207, 216, 489, 641
HpyCH4III	ACNGT	2 cut(s)	629, 675
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	4 cut(s)	356, 457, 526, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	5 cut(s)	28, 47, 349, 505, 601
HspAI	GCGC	1 cut(s)	491
KflI	GGGWCCC	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	427, 509
Lsp1109I	GCAGC	3 cut(s)	450, 469, 472
LweI	GCATC	3 cut(s)	444, 513, 676
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	2 cut(s)	80, 272
MalI	GATC	2 cut(s)	429, 511
MboI	GATC	2 cut(s)	427, 509
MboII	GAAGA	3 cut(s)	291, 519, 695
MluCI	AATT	4 cut(s)	237, 256, 292, 472
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	685
MnlI	CCTC	5 cut(s)	181, 373, 378, 444, 675
MseI	TTAA	2 cut(s)	236, 698
MslI	CAYNNNNRTG	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	4 cut(s)	211, 282, 327, 690
MspR9I	CCNGG	3 cut(s)	211, 328, 644
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	1 cut(s)	463
NciI	CCSGG	2 cut(s)	211, 328
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	2 cut(s)	427, 509
NlaIII	CATG	5 cut(s)	28, 47, 349, 505, 601
NlaIV	GGNNCC	4 cut(s)	22, 225, 226, 659
NmuCI	GTSAC	2 cut(s)	80, 272
NspI	RCATGY	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	200
PaeI	GCATGC	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	202, 364, 392
PfoI	TCCNGGA	3 cut(s)	209, 326, 642
PkrI	GCNGC	4 cut(s)	459, 462, 465, 490
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
PpuMI	RGGWCCY	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	4 cut(s)	22, 225, 226, 659
PspPI	GGNCC	2 cut(s)	224, 658
PspPPI	RGGWCCY	1 cut(s)	224
PspXI	VCTCGAGB	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	236, 698
SatI	GCNGC	4 cut(s)	458, 461, 464, 489
Sau3AI	GATC	2 cut(s)	427, 509
Sau96I	GGNCC	2 cut(s)	224, 658
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	3 cut(s)	211, 328, 644
SetI	ASST	9 cut(s)	155, 192, 235, 251, 320, 465, 639, 667, 720
SfaNI	GCATC	3 cut(s)	444, 513, 676
SfcI	CTRYAG	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	200
SinI	GGWCC	2 cut(s)	224, 658
SlaI	CTCGAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	319, 369
SmoI	CTYRAG	2 cut(s)	319, 369
SphI	GCATGC	1 cut(s)	349
Sse9I	AATT	4 cut(s)	237, 256, 292, 472
SsiI	CCGC	4 cut(s)	107, 285, 384, 488
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	3 cut(s)	209, 326, 642
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	629, 675
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	3 cut(s)	117, 200, 370
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	4 cut(s)	237, 256, 292, 472
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	3 cut(s)	202, 364, 392
Tru1I	TTAA	2 cut(s)	236, 698
Tru9I	TTAA	2 cut(s)	236, 698
TscAI	CASTG	1 cut(s)	533
TseFI	GTSAC	2 cut(s)	80, 272
TseI	GCWGC	3 cut(s)	457, 460, 463
Tsp45I	GTSAC	2 cut(s)	80, 272
TspDTI	ATGAA	3 cut(s)	291, 405, 614
TspRI	CASTG	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	224, 658
XagI	CCTNNNNNAGG	1 cut(s)	641
XceI	RCATGY	1 cut(s)	349
XhoI	CTCGAG	1 cut(s)	369
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.