Rorug04G0181300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001780
Physical Location & Seq
Reverse (-)
31734647 .. 31737139
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0181300.1

Sequence Viewer

Length: 579 bp
ATGTCTTTAATTCAAACCAAGAGGCTTCATTTCCTTATGGAAAGATTCGCTGTTCTCCCTTTCGGATTCGGCTGCACTTCTCACTCCAGCGTTGATCTCGGCGAAGCAACTCAACCACGAAAACCAAAAGTCAGAGCAGCACCACCAAACCCACCACCTCCTGAATCAACAGATGATGGAAGAACACAAGGAAGATCAGCAGTGAAGAACTCTTTTCATTTCCTGAGTCAAGGGAAGCAGCACATATCTAGTCGGATGCAGAGATTGATCAGAAGCATCAAAAATTTCTCTCAAATATTTGTTTTCAAGGAAGAAACTGAAGAAAAGGAAACAGAGATGGAGATTGGATTCCCAACGGACGTGAAGCATGTGACACACATAGGATCGGATGGCTCTACCACTACAAATAATAATCTCAACAATTTTAATAGCATTGCTGCTCCTCCTCCTGAAGTAGTTTCCTTCCCTTCGATTTCTCTGGAGCAATTTGAGTTGGTCATGGCTGCACAGACCACCCACCAACCCCCTCATAATCAGAAGCTCCTTGTTGATCTCAAATCTTCCCAAGATCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.44

Weight (kDa)

7.11

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 391
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 2 cut(s) 339, 471
AgsI TTSAA 2 cut(s) 14, 307
AjiI CACGTC 1 cut(s) 361
AluBI AGCT 1 cut(s) 541
AluI AGCT 1 cut(s) 541
AlwI GGATC 1 cut(s) 391
ApeKI GCWGC 5 cut(s) 72, 137, 238, 437, 503
ApoI RAATTY 1 cut(s) 283
BbvI GCAGC 5 cut(s) 59, 149, 250, 424, 490
BccI CCATC 3 cut(s) 170, 331, 383
BclI TGATCA 1 cut(s) 267
BfaI CTAG 1 cut(s) 249
BglII AGATCT 1 cut(s) 568
BisI GCNGC 5 cut(s) 73, 138, 239, 438, 504
BlsI GCNGC 5 cut(s) 74, 139, 240, 439, 505
BmgBI CACGTC 1 cut(s) 361
BmsI GCATC 2 cut(s) 246, 285
BpmI CTGGAG 2 cut(s) 70, 500
Bse3DI GCAATG 1 cut(s) 432
BseGI GGATG 2 cut(s) 261, 394
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 215
BseRI GAGGAG 2 cut(s) 432, 435
BseXI GCAGC 5 cut(s) 59, 149, 250, 424, 490
BsgI GTGCAG 2 cut(s) 58, 489
Bsp143I GATC 6 cut(s) 94, 194, 267, 383, 550, 568
BspCNI CTCAG 1 cut(s) 216
BspPI GGATC 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 432
BssMI GATC 6 cut(s) 94, 194, 267, 383, 550, 568
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 2 cut(s) 261, 394
BstKTI GATC 6 cut(s) 97, 197, 270, 386, 553, 571
BstMBI GATC 6 cut(s) 94, 194, 267, 383, 550, 568
BstNSI RCATGY 1 cut(s) 371
BstV1I GCAGC 5 cut(s) 59, 149, 250, 424, 490
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 261, 394
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
CviAII CATG 2 cut(s) 368, 499
CviJI RGCY 5 cut(s) 25, 72, 393, 503, 541
CviKI_1 RGCY 5 cut(s) 25, 72, 393, 503, 541
DdeI CTNAG 1 cut(s) 224
DpnI GATC 6 cut(s) 96, 196, 269, 385, 552, 570
DpnII GATC 6 cut(s) 94, 194, 267, 383, 550, 568
Eco57I CTGAAG 2 cut(s) 339, 471
FaeI CATG 2 cut(s) 371, 502
FaiI YATR 6 cut(s) 38, 245, 369, 380, 500, 531
FatI CATG 2 cut(s) 367, 498
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 5 cut(s) 73, 138, 239, 438, 504
FokI GGATG 2 cut(s) 268, 401
Fsp4HI GCNGC 5 cut(s) 73, 138, 239, 438, 504
FspBI CTAG 1 cut(s) 249
GluI GCNGC 5 cut(s) 73, 138, 239, 438, 504
GsuI CTGGAG 2 cut(s) 70, 500
Hin1II CATG 2 cut(s) 371, 502
HinfI GANTC 5 cut(s) 45, 66, 164, 226, 348
Hpy188I TCNGA 6 cut(s) 65, 134, 255, 272, 388, 537
Hpy188III TCNNGA 4 cut(s) 161, 223, 449, 479
HpyAV CCTTC 2 cut(s) 472, 477
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 75, 259, 506
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 2 cut(s) 371, 502
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 6 cut(s) 94, 194, 267, 383, 550, 568
LmnI GCTCC 3 cut(s) 445, 481, 546
LpnPI CCDG 5 cut(s) 100, 174, 236, 462, 464
Lsp1109I GCAGC 5 cut(s) 59, 149, 250, 424, 490
LweI GCATC 2 cut(s) 246, 285
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 370
MalI GATC 6 cut(s) 96, 196, 269, 385, 552, 570
MboI GATC 6 cut(s) 94, 194, 267, 383, 550, 568
MboII GAAGA 6 cut(s) 192, 204, 217, 323, 332, 552
MflI RGATCY 1 cut(s) 568
MluCI AATT 5 cut(s) 9, 283, 421, 485, 574
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 5 cut(s) 15, 168, 453, 456, 537
MseI TTAA 4 cut(s) 8, 426, 573, 577
NdeII GATC 6 cut(s) 94, 194, 267, 383, 550, 568
NlaIII CATG 2 cut(s) 371, 502
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 1 cut(s) 371
PacI TTAATTAA 1 cut(s) 577
PfeI GAWTC 4 cut(s) 45, 66, 164, 348
PkrI GCNGC 5 cut(s) 74, 139, 240, 439, 505
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 568
SaqAI TTAA 4 cut(s) 8, 426, 573, 577
SatI GCNGC 5 cut(s) 73, 138, 239, 438, 504
Sau3AI GATC 6 cut(s) 94, 194, 267, 383, 550, 568
SchI GAGTC 1 cut(s) 235
SetI ASST 3 cut(s) 160, 363, 543
SfaNI GCATC 2 cut(s) 246, 285
Sse9I AATT 5 cut(s) 9, 283, 421, 485, 574
SspI AATATT 1 cut(s) 297
SspMI CTAG 1 cut(s) 249
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 470
TasI AATT 5 cut(s) 9, 283, 421, 485, 574
TfiI GAWTC 4 cut(s) 45, 66, 164, 348
Tru1I TTAA 4 cut(s) 8, 426, 573, 577
Tru9I TTAA 4 cut(s) 8, 426, 573, 577
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 5 cut(s) 72, 137, 238, 437, 503
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 17, 206
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 207
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 371
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.