Prupe.1G134800_v2.0.a1

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001780
Physical Location & Seq
Reverse (-)
10645071 .. 10650069
4999 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G134800.1

Sequence Viewer

Length: 1032 bp
ATGATTCTCTGGCTGTATAAATTCTCTGTGGGTGTTTTCTTTGCTCGGGCGCAAATGGACAACGCGACGTCGCCCGCTTCGTCTTCCTCGACTGTCAAGTGCTCCATCTGCATGGACGACGTCTCCGATGACTGTGGCCGTACTGTCGTCAGGCTTCGCTGCTCTCACTCGTTTCATCTCGATTGCATCGGTTCTGCATTCAATGTAAAAGGTGTCATGGAATGCCCAAATTGCCGCGAGATTGAGAATGGTGTATGGAGGTGTTTTGAGAATGGTAGCCCTGAGCCTGACTTATATGAGGGGATGGATGAGGAGCCTGTGGATTTCATTGACATGGGAAATGGAACTTTTGTACGTCACTATACTTGGGAAACAAGGTTACCATCACCTGGCTATGGGAATTTCGTTGACCCCTATGCCGTCTTTGCTGGTAATCCTAATACCAGCCATCAATTGAATGTCCCTCCTGTACACAGTGGGGTATTTACTTCCCGGGTTAACTGGAGATGTGATCCTTTCATATGTGATACCTGTATCAATTCGTTTTCAAGGGGTGACCATACCAGTGGTGCAAATTGGGCTTCAGTTAGATCTGCAACCTTGAGTGCTGGGCTTGATTTTCATGCTATGCCAAATGAACCATTTGTTCCTCGAATCGTTGAGCGTGGGATGCTTGTTCAAATTGCTACTGAATCTCCATTTGGTTTGGGTTATCAAGGAAGCAATGATCCAGTTTATTCCAACTTACGAAGGATGCAGCAGACACCAACCAATTCCTCTTCATCTGCTGCAGACGCTTACATGAGAAGATCAAATGGATTGAGGGGCTGGTTTCCAGCAGAGTACACAGCACCTTCGCTAGTTGAACAGACTGGGAACTCCTTTTCATGGTCTGTGAACCTCAACTCTAACCTGTCAGAAGCAGCAACTCACAGTCATCACCATGTCCAGGAACGAAATGCAGTCGAACCTCTCCAACTATTTCCTGAAGACACTGGTTCACTGCTCCCGGACATTAATGAGTACGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

344

Amino Acids

38.01

Weight (kDa)

5.08

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 71, 123
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 2 cut(s) 65, 237
AciI CCGC 2 cut(s) 75, 235
AclWI GGATC 2 cut(s) 506, 722
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 2 cut(s) 20, 400
AcuI CTGAAG 2 cut(s) 567, 1008
AcyI GRCGYC 2 cut(s) 68, 120
AfaI GTAC 5 cut(s) 142, 354, 471, 845, 1025
AfiI CCNNNNNNNGG 4 cut(s) 389, 395, 888, 949
AgsI TTSAA 5 cut(s) 202, 457, 549, 680, 866
AjnI CCWGG 2 cut(s) 388, 948
AjuI GAANNNNNNNTTGG 2 cut(s) 684, 716
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 2 cut(s) 506, 722
Ama87I CYCGRG 2 cut(s) 45, 492
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 4 cut(s) 159, 757, 788, 923
ApoI RAATTY 2 cut(s) 20, 400
AseI ATTAAT 1 cut(s) 1017
AspLEI GCGC 1 cut(s) 52
AsuC2I CCSGG 3 cut(s) 493, 494, 1010
AsuHPI GGTGA 3 cut(s) 378, 566, 932
AvaI CYCGRG 2 cut(s) 45, 492
BbsI GAAGAC 2 cut(s) 75, 996
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 4 cut(s) 146, 769, 775, 935
BccI CCATC 4 cut(s) 113, 298, 391, 456
BceAI ACGGC 2 cut(s) 123, 404
BciT130I CCWGG 2 cut(s) 390, 950
BcnI CCSGG 3 cut(s) 493, 494, 1010
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 1 cut(s) 860
BfmI CTRYAG 1 cut(s) 789
BglII AGATCT 1 cut(s) 590
BisI GCNGC 5 cut(s) 160, 235, 758, 789, 924
BlsI GCNGC 5 cut(s) 161, 236, 759, 790, 925
Bme1390I CCNGG 5 cut(s) 390, 493, 494, 950, 1010
BmeT110I CYCGRG 2 cut(s) 45, 492
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 5 cut(s) 390, 493, 494, 950, 1010
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 3 cut(s) 195, 660, 744
BmuI ACTGGG 1 cut(s) 882
BpiI GAAGAC 2 cut(s) 75, 996
BpmI CTGGAG 1 cut(s) 523
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 622
BpuMI CCSGG 3 cut(s) 493, 494, 1010
BsaHI GRCGYC 2 cut(s) 68, 120
BsaJI CCNNGG 1 cut(s) 492
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 679, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 389, 395, 888, 949
Bse1I ACTGG 5 cut(s) 506, 564, 731, 877, 1000
Bse3DI GCAATG 1 cut(s) 730
BseBI CCWGG 2 cut(s) 390, 950
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 4 cut(s) 309, 313, 675, 759
BseLI CCNNNNNNNGG 4 cut(s) 389, 395, 888, 949
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 5 cut(s) 506, 564, 731, 877, 1000
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 4 cut(s) 146, 769, 775, 935
BseYI CCCAGC 1 cut(s) 608
Bsh1236I CGCG 2 cut(s) 65, 237
BshFI GGCC 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 2 cut(s) 45, 492
BsiSI CCGG 2 cut(s) 493, 1010
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 4 cut(s) 389, 395, 888, 949
BsmAI GTCTC 1 cut(s) 127
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 446
BsmI GAATGC 2 cut(s) 197, 227
BsnI GGCC 1 cut(s) 138
BsoBI CYCGRG 2 cut(s) 45, 492
Bsp1286I GDGCHC 1 cut(s) 104
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 4 cut(s) 511, 590, 727, 809
BspACI CCGC 2 cut(s) 75, 235
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 274
BspFNI CGCG 2 cut(s) 65, 237
BspLI GGNNCC 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 793
BspPI GGATC 2 cut(s) 506, 722
BsrDI GCAATG 1 cut(s) 730
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 5 cut(s) 506, 564, 731, 877, 1000
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 4 cut(s) 511, 590, 727, 809
BssNI GRCGYC 2 cut(s) 68, 120
Bst2UI CCWGG 2 cut(s) 390, 950
Bst4CI ACNGT 5 cut(s) 94, 134, 145, 476, 935
Bst6I CTCTTC 1 cut(s) 784
BstACI GRCGYC 2 cut(s) 68, 120
BstAUI TGTACA 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 282
BstEII GGTNACC 2 cut(s) 378, 554
BstF5I GGATG 4 cut(s) 309, 313, 675, 759
BstFNI CGCG 2 cut(s) 65, 237
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 4 cut(s) 514, 593, 730, 812
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 4 cut(s) 511, 590, 727, 809
BstMWI GCNNNNNNNGC 6 cut(s) 108, 231, 425, 578, 670, 794
BstNI CCWGG 2 cut(s) 390, 950
BstPI GGTNACC 2 cut(s) 378, 554
BstSCI CCNGG 5 cut(s) 388, 491, 492, 948, 1008
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 2 cut(s) 65, 237
BstV1I GCAGC 4 cut(s) 146, 769, 775, 935
BstV2I GAAGAC 2 cut(s) 75, 996
BstX2I RGATCY 1 cut(s) 590
BstXI CCANNNNNNTGG 2 cut(s) 112, 566
BstYI RGATCY 1 cut(s) 590
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 4 cut(s) 309, 313, 675, 759
BtsI GCAGTG 1 cut(s) 1001
BtsIMutI CAGTG 4 cut(s) 481, 571, 993, 1001
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 52
Cfr9I CCCGGG 1 cut(s) 492
CseI GACGC 1 cut(s) 803
Csp6I GTAC 5 cut(s) 141, 353, 470, 844, 1024
CviAII CATG 7 cut(s) 112, 217, 334, 623, 802, 888, 944
CviQI GTAC 5 cut(s) 141, 353, 470, 844, 1024
DdeI CTNAG 1 cut(s) 282
DpnI GATC 4 cut(s) 513, 592, 729, 811
DpnII GATC 4 cut(s) 511, 590, 727, 809
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 784
EarI CTCTTC 1 cut(s) 784
Eco57I CTGAAG 2 cut(s) 567, 1008
Eco88I CYCGRG 2 cut(s) 45, 492
Eco91I GGTNACC 2 cut(s) 378, 554
EcoO65I GGTNACC 2 cut(s) 378, 554
EcoRII CCWGG 2 cut(s) 388, 948
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 7 cut(s) 115, 220, 337, 626, 805, 891, 947
FaqI GGGAC 1 cut(s) 446
FatI CATG 7 cut(s) 111, 216, 333, 622, 801, 887, 943
FauI CCCGC 1 cut(s) 82
FauNDI CATATG 1 cut(s) 521
Fnu4HI GCNGC 5 cut(s) 160, 235, 758, 789, 924
FokI GGATG 4 cut(s) 316, 320, 682, 766
Fsp4HI GCNGC 5 cut(s) 160, 235, 758, 789, 924
FspBI CTAG 1 cut(s) 860
GlaI GCGC 1 cut(s) 51
GluI GCNGC 5 cut(s) 160, 235, 758, 789, 924
GsaI CCCAGC 1 cut(s) 612
GsuI CTGGAG 1 cut(s) 523
HaeIII GGCC 1 cut(s) 138
HapII CCGG 2 cut(s) 493, 1010
HgaI GACGC 1 cut(s) 803
HhaI GCGC 1 cut(s) 52
Hin1I GRCGYC 2 cut(s) 68, 120
Hin1II CATG 7 cut(s) 115, 220, 337, 626, 805, 891, 947
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 2 cut(s) 409, 499
HindII GTYRAC 2 cut(s) 409, 499
HinfI GANTC 3 cut(s) 4, 654, 692
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 2 cut(s) 493, 1010
HphI GGTGA 3 cut(s) 378, 566, 932
Hpy166II GTNNAC 6 cut(s) 409, 472, 499, 846, 898, 1001
Hpy188I TCNGA 2 cut(s) 127, 919
Hpy188III TCNNGA 2 cut(s) 179, 986
Hpy8I GTNNAC 6 cut(s) 409, 472, 499, 846, 898, 1001
Hpy99I CGWCG 3 cut(s) 70, 73, 122
HpyAV CCTTC 2 cut(s) 744, 864
HpyCH4III ACNGT 5 cut(s) 94, 134, 145, 476, 935
HpyCH4IV ACGT 3 cut(s) 68, 120, 355
HpyCH4V TGCA 8 cut(s) 111, 186, 197, 572, 596, 757, 791, 962
HpyF10VI GCNNNNNNNGC 6 cut(s) 108, 231, 425, 578, 670, 794
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 3 cut(s) 68, 120, 355
Hsp92I GRCGYC 2 cut(s) 68, 120
Hsp92II CATG 7 cut(s) 115, 220, 337, 626, 805, 891, 947
HspAI GCGC 1 cut(s) 50
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 4 cut(s) 511, 590, 727, 809
LmnI GCTCC 3 cut(s) 107, 313, 1011
Lsp1109I GCAGC 4 cut(s) 146, 769, 775, 935
LweI GCATC 3 cut(s) 195, 660, 744
MaeI CTAG 1 cut(s) 860
MaeII ACGT 3 cut(s) 68, 120, 355
MaeIII GTNAC 3 cut(s) 356, 378, 554
MalI GATC 4 cut(s) 513, 592, 729, 811
MboI GATC 4 cut(s) 511, 590, 727, 809
MboII GAAGA 4 cut(s) 75, 771, 819, 1001
MfeI CAATTG 1 cut(s) 452
MflI RGATCY 1 cut(s) 590
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 8 cut(s) 20, 229, 400, 452, 538, 574, 681, 772
MmeI TCCRAC 2 cut(s) 765, 1000
MseI TTAA 2 cut(s) 498, 1017
MslI CAYNNNNRTG 4 cut(s) 110, 332, 564, 942
MspI CCGG 2 cut(s) 493, 1010
MspR9I CCNGG 5 cut(s) 390, 493, 494, 950, 1010
MunI CAATTG 1 cut(s) 452
Mva1269I GAATGC 2 cut(s) 197, 227
MvaI CCWGG 2 cut(s) 390, 950
MvnI CGCG 2 cut(s) 65, 237
MwoI GCNNNNNNNGC 6 cut(s) 108, 231, 425, 578, 670, 794
NciI CCSGG 3 cut(s) 493, 494, 1010
NdeI CATATG 1 cut(s) 521
NdeII GATC 4 cut(s) 511, 590, 727, 809
NlaIII CATG 7 cut(s) 115, 220, 337, 626, 805, 891, 947
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 2 cut(s) 356, 554
PcsI WCGNNNNNNNCGW 3 cut(s) 77, 86, 123
PctI GAATGC 2 cut(s) 197, 227
PfeI GAWTC 3 cut(s) 4, 654, 692
PflFI GACNNNGTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 389
PfoI TCCNGGA 2 cut(s) 948, 1008
PkrI GCNGC 5 cut(s) 161, 236, 759, 790, 925
PshBI ATTAAT 1 cut(s) 1017
Psp6I CCWGG 2 cut(s) 388, 948
PspEI GGTNACC 2 cut(s) 378, 554
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 2 cut(s) 388, 948
PspN4I GGNNCC 1 cut(s) 315
PstI CTGCAG 1 cut(s) 793
PsuI RGATCY 1 cut(s) 590
PsyI GACNNNGTC 1 cut(s) 119
RsaI GTAC 5 cut(s) 142, 354, 471, 845, 1025
RsaNI GTAC 5 cut(s) 141, 353, 470, 844, 1024
RseI CAYNNNNRTG 4 cut(s) 110, 332, 564, 942
SaqAI TTAA 2 cut(s) 498, 1017
SatI GCNGC 5 cut(s) 160, 235, 758, 789, 924
Sau3AI GATC 4 cut(s) 511, 590, 727, 809
ScrFI CCNGG 5 cut(s) 390, 493, 494, 950, 1010
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 3 cut(s) 195, 660, 744
SfcI CTRYAG 1 cut(s) 789
SmaI CCCGGG 1 cut(s) 494
SmiMI CAYNNNNRTG 4 cut(s) 110, 332, 564, 942
SmlI CTYRAG 1 cut(s) 601
SmoI CTYRAG 1 cut(s) 601
Sse9I AATT 8 cut(s) 20, 229, 400, 452, 538, 574, 681, 772
SsiI CCGC 2 cut(s) 75, 235
SspMI CTAG 1 cut(s) 860
StyD4I CCNGG 5 cut(s) 388, 491, 492, 948, 1008
TaaI ACNGT 5 cut(s) 94, 134, 145, 476, 935
TaiI ACGT 3 cut(s) 71, 123, 358
TaqI TCGA 4 cut(s) 89, 180, 652, 966
TasI AATT 8 cut(s) 20, 229, 400, 452, 538, 574, 681, 772
TatI WGTACW 2 cut(s) 469, 843
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 3 cut(s) 4, 654, 692
Tru1I TTAA 2 cut(s) 498, 1017
Tru9I TTAA 2 cut(s) 498, 1017
TscAI CASTG 4 cut(s) 481, 571, 1000, 1008
TseFI GTSAC 2 cut(s) 356, 554
TseI GCWGC 4 cut(s) 159, 757, 788, 923
Tsp45I GTSAC 2 cut(s) 356, 554
TspDTI ATGAA 7 cut(s) 164, 316, 508, 611, 651, 771, 876
TspMI CCCGGG 1 cut(s) 492
TspRI CASTG 4 cut(s) 481, 571, 1000, 1008
Tth111I GACNNNGTC 1 cut(s) 119
Van91I CCANNNNNTGG 1 cut(s) 389
VspI ATTAAT 1 cut(s) 1017
XapI RAATTY 2 cut(s) 20, 400
XmaI CCCGGG 1 cut(s) 492
XspI CTAG 1 cut(s) 860
ZraI GACGTC 2 cut(s) 69, 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.