Rh2AG227700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001780
Physical Location & Seq
Reverse (-)
24187498 .. 24187770
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG227700.1

Sequence Viewer

Length: 273 bp
ATGTGCCCGAATGGCCCTTCTGAAGTATCCGAACCAACAGAGAGTCCTCTACGTTATGGAATTTGTGATGATTGTATCAACCACCACCTTTCAAGTGGCCATGCTGGTCATAGTAATGGGGTTTCAGTTCCAGCTGGAAACCTGGGAATTCCTAGCGCTGATGTTAATGCCATTCCCAGTGATTTCATAGTAATGGAGACAGGTTTTGGAGGATGCGTGAGTGCTACATCCATGGAAATACTACCAAGTATTTGCGAGTTCCTGATGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.23

Weight (kDa)

4.3

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 60, 147
AcuI CTGAAG 1 cut(s) 42
AfeI AGCGCT 1 cut(s) 157
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 191
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 2 cut(s) 13, 97
ApoI RAATTY 2 cut(s) 60, 147
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 99
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 143
BciVI GTATCC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 159
BfuI GTATCC 1 cut(s) 37
BglI GCCNNNNNGGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 142, 231
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bse1I ACTGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 142, 231
BseGI GGATG 2 cut(s) 218, 227
BseNI ACTGG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 8
BshFI GGCC 2 cut(s) 15, 99
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 2 cut(s) 15, 99
Bsp1286I GDGCHC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 231
BspANI GGCC 2 cut(s) 15, 99
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 142, 231
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 218, 227
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 8
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 15, 99
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 2 cut(s) 218, 227
BtsIMutI CAGTG 1 cut(s) 184
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 14
CviAII CATG 2 cut(s) 101, 232
CviJI RGCY 3 cut(s) 15, 99, 134
CviKI_1 RGCY 3 cut(s) 15, 99, 134
EaeI YGGCCR 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 231
Eco47III AGCGCT 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 2 cut(s) 104, 235
FaiI YATR 5 cut(s) 57, 102, 111, 188, 233
FatI CATG 2 cut(s) 100, 231
FokI GGATG 2 cut(s) 214, 225
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 157
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 2 cut(s) 15, 99
HhaI GCGC 1 cut(s) 158
Hin1II CATG 2 cut(s) 104, 235
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 22, 31
Hpy188III TCNNGA 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 2 cut(s) 104, 235
HspAI GCGC 1 cut(s) 156
LpnPI CCDG 7 cut(s) 90, 120, 128, 144, 155, 186, 190
LweI GCATC 1 cut(s) 203
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 2 cut(s) 60, 147
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 2 cut(s) 57, 203
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 2 cut(s) 114, 191
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 12
NcoI CCATGG 1 cut(s) 231
NlaIII CATG 2 cut(s) 104, 235
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspPI GGNCC 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 134
RseI CAYNNNNRTG 2 cut(s) 114, 191
SaqAI TTAA 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 55, 90, 136, 144, 205
SfaNI GCATC 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 114, 191
Sse9I AATT 2 cut(s) 60, 147
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 231
TaiI ACGT 1 cut(s) 55
TasI AATT 2 cut(s) 60, 147
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 175
TspRI CASTG 1 cut(s) 184
XapI RAATTY 2 cut(s) 60, 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.