Rh3DG040700

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001780
Physical Location & Seq
Reverse (-)
2670796 .. 2671205
410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG040700.1

Sequence Viewer

Length: 333 bp
ATGGTTCAGCACACAGGCTTGGAAACGTTATTCTTTTCTCTCTCATTGAATTTTGATGATCAGGTTACAATTCTGGTGGCTACTGATGGAGAACAGAAGTTGCCCACCATCAGTGGCACTCGTGACTTGAAGAAAGCATTACATAAACTTGGAGCCATTTCCTCGAGCAAAATAATGGCTGTAGAGGTCTTGTGGACTCCTCAACAAGAAAACGATACTTTGACTGAGAGGGAACTACTCAAAGGTTACCCAGATTTGAGGGGTTTTTATGAAGAAGCATATCAAGGGCCATATGAAGATCAGCAGCCGTTCCTAGGGGCAAATGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

110

Amino Acids

12.3

Weight (kDa)

4.63

Isoelectric Point (pI)

28.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 22 - 87 9.9e-25 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 26
AcsI RAATTY 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 2 cut(s) 49, 130
Ama87I CYCGRG 1 cut(s) 163
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 49
AspA2I CCTAGG 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 163
AvrII CCTAGG 1 cut(s) 313
BauI CACGAG 1 cut(s) 120
BbvI GCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 80, 116
BceAI ACGGC 1 cut(s) 292
BclI TGATCA 1 cut(s) 58
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 305
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 316
BshFI GGCC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 314
BsnI GGCC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 163
Bsp143I GATC 2 cut(s) 58, 298
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 2 cut(s) 58, 298
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 313
Bst2BI CACGAG 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 225
BstEII GGTNACC 1 cut(s) 245
BstKTI GATC 2 cut(s) 61, 301
BstMBI GATC 2 cut(s) 58, 298
BstPI GGTNACC 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 287
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviJI RGCY 6 cut(s) 18, 80, 155, 179, 289, 307
CviKI_1 RGCY 6 cut(s) 18, 80, 155, 179, 289, 307
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 60, 300
DpnII GATC 2 cut(s) 58, 298
Eco130I CCWWGG 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 163
Eco91I GGTNACC 1 cut(s) 245
EcoO65I GGTNACC 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 313
FaiI YATR 5 cut(s) 144, 270, 280, 292, 294
FauNDI CATATG 1 cut(s) 292
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 1 cut(s) 314
GluI GCNGC 1 cut(s) 305
HaeIII GGCC 1 cut(s) 289
HinfI GANTC 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 298
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 3 cut(s) 47, 59, 264
Lsp1109I GCAGC 1 cut(s) 316
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 3 cut(s) 64, 122, 245
MalI GATC 2 cut(s) 60, 300
MboI GATC 2 cut(s) 58, 298
MboII GAAGA 3 cut(s) 142, 284, 308
MluCI AATT 2 cut(s) 49, 69
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 5 cut(s) 172, 178, 210, 222, 252
NdeI CATATG 1 cut(s) 292
NdeII GATC 2 cut(s) 58, 298
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 163
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp1406I AACGTT 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 287
PspXI VCTCGAGB 1 cut(s) 163
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 2 cut(s) 58, 298
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 190
SetI ASST 4 cut(s) 29, 66, 189, 247
SfcI CTRYAG 1 cut(s) 180
Sfr274I CTCGAG 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 2 cut(s) 49, 69
SspMI CTAG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 313
TaiI ACGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 164
TasI AATT 2 cut(s) 49, 69
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 285, 309
TspRI CASTG 1 cut(s) 118
XapI RAATTY 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 163
XmaJI CCTAGG 1 cut(s) 313
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.