AT4G19840

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001185
Physical Location & Seq
Forward (+)
10773804 .. 10775942
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19840.1

Sequence Viewer

Length: 741 bp
ATGAGCAAGAAACATTGCTCAGAATTATTACCAAATAAGATGTTTAGAAACCAAGACTCGAAATACTTGATCCCGGTGCAGAAAGAAGCGCCACCGGTGACAACTTTACCGATGAAAGCTTCAACGGTGAAATCTCCACACAACTGTGAGGCCATTCTCAGAGACGCAGATCCTCCGATCTCTCTCTCCTCTGTTAATCTCTCTGAACAGCTACGGTCTGGTGTTTTCTTGAAACCCAAGAAACAGATCAAATATTGGGTGGACGAGAGAAACAGCAACTGCTTCATGCTCTTTGCAAAGAACCTCTCTATAACTTGGTCTGATGACGTCAACTATTGGACTTGGTTTACCGAAAAAGAGTCACCAAACGAGAATGTGGAAGCTGTGGGATTGAAAAACGTTTGTTGGCTCGACATCACGGGAAAATTCGACACGAGGAACCTCACTCCGGGGATTGTTTACGAGGTAGTCTTTAAGGTGAAGCTAGAGGATCCGGCCTATGGATGGGACACGCCGGTGAACCTAAAGCTAGTCTTGCCTAACGGTAAGGAGAAACCACAAGAGAAAAAGGTGAGTTTGAGGGAACTTCCAAGGTATAAATGGGTCGATGTCAGAGTTGGCGAGTTCGTACCTGAGAAATCCGCTGCCGGAGAGATCACTTTCTCAATGTATGAGCATGCGGCTGGTGTTTGGAAGAAAGGGCTCTCCCTCAAAGGTGTTGCAATTCGTCCCAAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

246

Amino Acids

28.1

Weight (kDa)

9.18

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 93 - 244 2.1e-42 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 330
AciI CCGC 2 cut(s) 642, 680
AclI AACGTT 1 cut(s) 399
AclWI GGATC 4 cut(s) 64, 164, 485, 498
AcsI RAATTY 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 1 cut(s) 630
AfiI CCNNNNNNNGG 3 cut(s) 448, 500, 504
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 3 cut(s) 123, 232, 394
AleI CACNNNNGTG 2 cut(s) 144, 515
AluBI AGCT 5 cut(s) 119, 211, 383, 484, 529
AluI AGCT 5 cut(s) 119, 211, 383, 484, 529
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 4 cut(s) 64, 164, 485, 498
AlwNI CAGNNNCTG 1 cut(s) 279
AoxI GGCC 2 cut(s) 150, 495
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 1 cut(s) 425
AsiGI ACCGGT 1 cut(s) 94
AspLEI GCGC 1 cut(s) 91
AsuC2I CCSGG 2 cut(s) 74, 450
AsuHPI GGTGA 6 cut(s) 109, 139, 354, 490, 529, 583
BamHI GGATCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 705
BauI CACGAG 1 cut(s) 433
BbvI GCAGC 1 cut(s) 631
BccI CCATC 1 cut(s) 498
BcnI CCSGG 2 cut(s) 74, 450
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 2 cut(s) 485, 530
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 2 cut(s) 645, 681
BlsI GCNGC 2 cut(s) 646, 682
Bme1390I CCNGG 2 cut(s) 74, 450
BmiI GGNNCC 2 cut(s) 440, 492
BmrFI CCNGG 2 cut(s) 74, 450
BpuMI CCSGG 2 cut(s) 74, 450
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 449, 590
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 3 cut(s) 448, 500, 504
Bse118I RCCGGY 2 cut(s) 94, 514
Bse3DI GCAATG 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 449, 590
BseGI GGATG 1 cut(s) 509
BseLI CCNNNNNNNGG 3 cut(s) 448, 500, 504
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 3 cut(s) 33, 172, 624
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 631
BsgI GTGCAG 1 cut(s) 98
BshFI GGCC 2 cut(s) 152, 497
BshTI ACCGGT 1 cut(s) 94
BsiSI CCGG 6 cut(s) 74, 95, 449, 494, 515, 648
BslFI GGGAC 2 cut(s) 521, 714
BslI CCNNNNNNNGG 3 cut(s) 448, 500, 504
BsmAI GTCTC 1 cut(s) 156
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 521, 714
BsnI GGCC 2 cut(s) 152, 497
Bsp1286I GDGCHC 1 cut(s) 705
Bsp143I GATC 6 cut(s) 69, 169, 177, 246, 490, 654
BspACI CCGC 2 cut(s) 642, 680
BspANI GGCC 2 cut(s) 152, 497
BspCNI CTCAG 3 cut(s) 32, 171, 625
BspLI GGNNCC 2 cut(s) 440, 492
BspPI GGATC 4 cut(s) 64, 164, 485, 498
BsrDI GCAATG 1 cut(s) 13
BsrFI RCCGGY 2 cut(s) 94, 514
BssAI RCCGGY 2 cut(s) 94, 514
BssECI CCNNGG 2 cut(s) 449, 590
BssMI GATC 6 cut(s) 69, 169, 177, 246, 490, 654
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 590
Bst2BI CACGAG 1 cut(s) 433
Bst4CI ACNGT 5 cut(s) 127, 146, 216, 545, 738
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 3 cut(s) 19, 158, 633
BstF5I GGATG 1 cut(s) 509
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 6 cut(s) 72, 172, 180, 249, 493, 657
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 6 cut(s) 69, 169, 177, 246, 490, 654
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 2 cut(s) 72, 448
BstV1I GCAGC 1 cut(s) 631
BstX2I RGATCY 2 cut(s) 169, 490
BstYI RGATCY 2 cut(s) 169, 490
BsuRI GGCC 2 cut(s) 152, 497
BtsCI GGATG 1 cut(s) 509
Cac8I GCNNGC 1 cut(s) 678
CaiI CAGNNNCTG 1 cut(s) 279
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 2 cut(s) 94, 514
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 629
CspAI ACCGGT 1 cut(s) 94
CviAII CATG 2 cut(s) 286, 677
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 3 cut(s) 19, 158, 633
DpnI GATC 6 cut(s) 71, 171, 179, 248, 492, 656
DpnII GATC 6 cut(s) 69, 169, 177, 246, 490, 654
Eco130I CCWWGG 1 cut(s) 590
Eco24I GRGCYC 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 590
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 590
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 2 cut(s) 289, 680
FaiI YATR 6 cut(s) 287, 311, 501, 597, 672, 678
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 2 cut(s) 521, 714
FatI CATG 2 cut(s) 285, 676
Fnu4HI GCNGC 2 cut(s) 645, 681
FokI GGATG 1 cut(s) 516
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 2 cut(s) 645, 681
FspBI CTAG 2 cut(s) 485, 530
GlaI GCGC 1 cut(s) 90
GluI GCNGC 2 cut(s) 645, 681
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 2 cut(s) 152, 497
HapII CCGG 6 cut(s) 74, 95, 449, 494, 515, 648
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 2 cut(s) 289, 680
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 2 cut(s) 56, 359
HpaII CCGG 6 cut(s) 74, 95, 449, 494, 515, 648
HphI GGTGA 6 cut(s) 109, 139, 354, 490, 529, 583
Hpy166II GTNNAC 5 cut(s) 262, 331, 348, 460, 520
Hpy188I TCNGA 6 cut(s) 22, 161, 177, 205, 322, 614
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 5 cut(s) 262, 331, 348, 460, 520
HpyCH4III ACNGT 5 cut(s) 127, 146, 216, 545, 738
HpyCH4IV ACGT 2 cut(s) 327, 399
HpyCH4V TGCA 3 cut(s) 79, 296, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 3 cut(s) 19, 158, 633
HpySE526I ACGT 2 cut(s) 327, 399
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 2 cut(s) 289, 680
HspAI GCGC 1 cut(s) 89
Kzo9I GATC 6 cut(s) 69, 169, 177, 246, 490, 654
LpnPI CCDG 9 cut(s) 87, 108, 204, 462, 507, 528, 645, 661, 669
Lsp1109I GCAGC 1 cut(s) 631
MaeI CTAG 2 cut(s) 485, 530
MaeII ACGT 2 cut(s) 327, 399
MaeIII GTNAC 2 cut(s) 97, 360
MalI GATC 6 cut(s) 71, 171, 179, 248, 492, 656
MboI GATC 6 cut(s) 69, 169, 177, 246, 490, 654
MboII GAAGA 1 cut(s) 706
MflI RGATCY 2 cut(s) 169, 490
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 3 cut(s) 23, 425, 723
MlyI GAGTC 2 cut(s) 50, 368
MseI TTAA 2 cut(s) 195, 474
MslI CAYNNNNRTG 2 cut(s) 144, 515
MspA1I CMGCKG 1 cut(s) 644
MspI CCGG 6 cut(s) 74, 95, 449, 494, 515, 648
MspR9I CCNGG 2 cut(s) 74, 450
MwoI GCNNNNNNNGC 1 cut(s) 535
NciI CCSGG 2 cut(s) 74, 450
NdeII GATC 6 cut(s) 69, 169, 177, 246, 490, 654
NlaIII CATG 2 cut(s) 289, 680
NlaIV GGNNCC 2 cut(s) 440, 492
NmuCI GTSAC 2 cut(s) 97, 360
NspI RCATGY 1 cut(s) 680
OliI CACNNNNGTG 2 cut(s) 144, 515
PaeI GCATGC 1 cut(s) 680
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 2 cut(s) 646, 682
PleI GAGTC 2 cut(s) 50, 367
PpsI GAGTC 2 cut(s) 50, 367
Psp1406I AACGTT 1 cut(s) 399
PspN4I GGNNCC 2 cut(s) 440, 492
PstNI CAGNNNCTG 1 cut(s) 279
PsuI RGATCY 2 cut(s) 169, 490
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
RseI CAYNNNNRTG 2 cut(s) 144, 515
SaqAI TTAA 2 cut(s) 195, 474
SatI GCNGC 2 cut(s) 645, 681
Sau3AI GATC 6 cut(s) 69, 169, 177, 246, 490, 654
SchI GAGTC 2 cut(s) 50, 368
ScrFI CCNGG 2 cut(s) 74, 450
SduI GDGCHC 1 cut(s) 705
SgrAI CRCCGGYG 2 cut(s) 94, 514
SmiMI CAYNNNNRTG 2 cut(s) 144, 515
SphI GCATGC 1 cut(s) 680
Sse9I AATT 3 cut(s) 23, 425, 723
SsiI CCGC 2 cut(s) 642, 680
SspI AATATT 1 cut(s) 254
SspMI CTAG 2 cut(s) 485, 530
StyD4I CCNGG 2 cut(s) 72, 448
StyI CCWWGG 1 cut(s) 590
TaaI ACNGT 5 cut(s) 127, 146, 216, 545, 738
TaiI ACGT 2 cut(s) 330, 402
TaqI TCGA 4 cut(s) 59, 411, 429, 606
TasI AATT 3 cut(s) 23, 425, 723
TauI GCSGC 1 cut(s) 683
Tru1I TTAA 2 cut(s) 195, 474
Tru9I TTAA 2 cut(s) 195, 474
TseFI GTSAC 2 cut(s) 97, 360
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 2 cut(s) 97, 360
TspDTI ATGAA 2 cut(s) 128, 274
XapI RAATTY 1 cut(s) 425
XceI RCATGY 1 cut(s) 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XspI CTAG 2 cut(s) 485, 530
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.