Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

11939749 .. 11940972

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG081500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGGACACGGTGGTCACAAGATAAGGCCTCACAGTCGCAGCAGCTGAGTCCTGGAGAACCAAGTAACAAGGCAGTAGTGGAGAGAGTAACAGAAGCAACGCCTAGTGGCTCTAAACCCATCATAAAAGTGGAGAAATCAGCTCGTTTTCAGGCCAAACCTTCAGCTGATCACAACCAGGAGGCCAAAGTAGTGAAAGAAGTCGAGGGAACAGAGAAACCGACAGTTACACAAGTGCAGCAGCAGCAGCCGCAGCAGCTCCCACATAATTATGAAGCCATTGTGAAAGATGCCGACACTCCCATCAGCAAGTCACTGGAACACCTGTTTGGACATCTCTATGCTGGAATATTCTTAGACCAAAAGAGGAAGAAGTATTGGGTTGACAAGAAGTCCAACAACTGCTTCATGGTGTATCCAAGGGATCTCACAATCTCTTGGGCTGAAGAGAATCGTTACTGGCACTGGCCTTCCCTGGAAGAAACAAGTAATGTCTTCATCGATGCAGCTGAACTGTTAAATGTATGCTGGCTTCAAGTTCGTGGAAATATTGATTCCACAAAGCTGTCGCCAGGAACTCTATATGAAGTAGTATTTCTAGTGATGTTGAAAGCTGCAGCTTATGGATGGAAAGTTCCTGTCAATGTCAGTCTCACTCTCCCAGATGGTAACAATCAAGAACGTAAAGCTGATCTGAATAAAATCCCAAGAGAACAATGGACAGAGATACCGGTAGGCGAGTTTAGAGCATCAACAGGATTACTTGGGAACATTGAATTTTCGATGTATGAATCTGAAGAGCTAAAATGGAAGAGTGGACTTCTGATCAAGGGCGTTGCCGTTCGGCCTAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

285

Amino Acids

32.3

Weight (kDa)

7.71

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	134 - 283	1.3e-42	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	776
AcuI	CTGAAG	3 cut(s)	147, 465, 816
AgeI	ACCGGT	1 cut(s)	730
AgsI	TTSAA	3 cut(s)	536, 610, 776
AhdI	GACNNNNNGTC	1 cut(s)	391
AjnI	CCWGG	4 cut(s)	52, 177, 474, 571
AjuI	GAANNNNNNNTTGG	4 cut(s)	312, 344, 389, 421
AloI	GAACNNNNNNTCC	2 cut(s)	618, 650
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	432
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	5 cut(s)	27, 153, 183, 467, 845
ApoI	RAATTY	1 cut(s)	776
AsiGI	ACCGGT	1 cut(s)	730
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
BbsI	GAAGAC	1 cut(s)	487
BccI	CCATC	4 cut(s)	128, 311, 621, 659
BceAI	ACGGC	1 cut(s)	824
BciT130I	CCWGG	4 cut(s)	54, 179, 476, 573
BciVI	GTATCC	1 cut(s)	426
BclI	TGATCA	2 cut(s)	169, 825
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	2 cut(s)	105, 599
BfmI	CTRYAG	1 cut(s)	615
BfuI	GTATCC	1 cut(s)	426
Bme1390I	CCNGG	4 cut(s)	54, 179, 476, 573
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmrFI	CCNGG	4 cut(s)	54, 179, 476, 573
BmsI	GCATC	3 cut(s)	280, 493, 758
BpiI	GAAGAC	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	419, 474
BsaWI	WCCGGW	1 cut(s)	730
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	3 cut(s)	321, 464, 470
BseBI	CCWGG	4 cut(s)	54, 179, 476, 573
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	419, 474
BseGI	GGATG	1 cut(s)	632
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	3 cut(s)	321, 464, 470
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	5 cut(s)	29, 155, 185, 469, 847
BshTI	ACCGGT	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	731
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	5 cut(s)	29, 155, 185, 469, 847
Bsp143I	GATC	4 cut(s)	169, 424, 691, 825
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	5 cut(s)	29, 155, 185, 469, 847
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	501
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	1 cut(s)	432
BspQI	GCTCTTC	1 cut(s)	792
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	3 cut(s)	321, 464, 470
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	2 cut(s)	419, 474
BssMI	GATC	4 cut(s)	169, 424, 691, 825
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	4 cut(s)	54, 179, 476, 573
Bst4CI	ACNGT	4 cut(s)	12, 36, 226, 516
Bst6I	CTCTTC	3 cut(s)	441, 792, 806
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	2 cut(s)	47, 355
BstF5I	GGATG	1 cut(s)	632
BstKTI	GATC	4 cut(s)	172, 427, 694, 828
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	169, 424, 691, 825
BstMWI	GCNNNNNNNGC	5 cut(s)	244, 247, 250, 253, 256
BstNI	CCWGG	4 cut(s)	54, 179, 476, 573
BstSCI	CCNGG	4 cut(s)	52, 177, 474, 571
BstSFI	CTRYAG	1 cut(s)	615
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu15I	ATCGAT	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	5 cut(s)	29, 155, 185, 469, 847
BsuTUI	ATCGAT	1 cut(s)	501
BtsCI	GGATG	1 cut(s)	632
BtsIMutI	CAGTG	2 cut(s)	314, 463
Cac8I	GCNNGC	1 cut(s)	530
CaiI	CAGNNNCTG	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	730
ClaI	ATCGAT	1 cut(s)	501
CspAI	ACCGGT	1 cut(s)	730
CviAII	CATG	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	47, 355
DpnI	GATC	4 cut(s)	171, 426, 693, 827
DpnII	GATC	4 cut(s)	169, 424, 691, 825
DrdI	GACNNNNNNGTC	1 cut(s)	13
DriI	GACNNNNNGTC	1 cut(s)	391
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	3 cut(s)	441, 792, 806
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	3 cut(s)	441, 792, 806
Eco130I	CCWWGG	1 cut(s)	419
Eco147I	AGGCCT	1 cut(s)	29
Eco57I	CTGAAG	3 cut(s)	147, 465, 816
EcoRII	CCWGG	4 cut(s)	52, 177, 474, 571
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	1 cut(s)	412
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	408
FbaI	TGATCA	2 cut(s)	169, 825
FokI	GGATG	1 cut(s)	639
FspBI	CTAG	2 cut(s)	105, 599
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	5 cut(s)	29, 155, 185, 469, 847
HapII	CCGG	1 cut(s)	731
Hin1II	CATG	1 cut(s)	412
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	4 cut(s)	49, 451, 554, 791
HpaII	CCGG	1 cut(s)	731
Hpy166II	GTNNAC	2 cut(s)	385, 818
Hpy188I	TCNGA	3 cut(s)	696, 796, 825
Hpy188III	TCNNGA	1 cut(s)	677
Hpy8I	GTNNAC	2 cut(s)	385, 818
HpyAV	CCTTC	2 cut(s)	171, 480
HpyCH4III	ACNGT	4 cut(s)	12, 36, 226, 516
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	3 cut(s)	238, 506, 617
HpyF10VI	GCNNNNNNNGC	5 cut(s)	244, 247, 250, 253, 256
HpyF3I	CTNAG	2 cut(s)	47, 355
HpySE526I	ACGT	1 cut(s)	682
Hsp92II	CATG	1 cut(s)	412
Ksp22I	TGATCA	2 cut(s)	169, 825
Kzo9I	GATC	4 cut(s)	169, 424, 691, 825
LguI	GCTCTTC	1 cut(s)	792
LmnI	GCTCC	1 cut(s)	264
LweI	GCATC	3 cut(s)	280, 493, 758
MaeI	CTAG	2 cut(s)	105, 599
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	7 cut(s)	15, 65, 88, 226, 312, 455, 668
MalI	GATC	4 cut(s)	171, 426, 693, 827
MboI	GATC	4 cut(s)	169, 424, 691, 825
MboII	GAAGA	6 cut(s)	382, 458, 487, 491, 809, 823
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	2 cut(s)	268, 776
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	4 cut(s)	40, 175, 199, 360
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	3 cut(s)	128, 270, 339
MspA1I	CMGCKG	3 cut(s)	46, 167, 509
MspI	CCGG	1 cut(s)	731
MspR9I	CCNGG	4 cut(s)	54, 179, 476, 573
MvaI	CCWGG	4 cut(s)	54, 179, 476, 573
MwoI	GCNNNNNNNGC	5 cut(s)	244, 247, 250, 253, 256
NdeII	GATC	4 cut(s)	169, 424, 691, 825
NlaIII	CATG	1 cut(s)	412
NmuCI	GTSAC	2 cut(s)	15, 312
PceI	AGGCCT	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	792
PfeI	GAWTC	3 cut(s)	451, 554, 791
PfoI	TCCNGGA	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	730
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Psp6I	CCWGG	4 cut(s)	52, 177, 474, 571
PspGI	CCWGG	4 cut(s)	52, 177, 474, 571
PstI	CTGCAG	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	424
PvuII	CAGCTG	3 cut(s)	46, 167, 509
RseI	CAYNNNNRTG	3 cut(s)	128, 270, 339
SapI	GCTCTTC	1 cut(s)	792
SaqAI	TTAA	1 cut(s)	518
Sau3AI	GATC	4 cut(s)	169, 424, 691, 825
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	4 cut(s)	54, 179, 476, 573
SfaNI	GCATC	3 cut(s)	280, 493, 758
SfcI	CTRYAG	1 cut(s)	615
SmiMI	CAYNNNNRTG	3 cut(s)	128, 270, 339
Sse9I	AATT	2 cut(s)	268, 776
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	251
SspI	AATATT	2 cut(s)	351, 550
SspMI	CTAG	2 cut(s)	105, 599
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	52, 177, 474, 571
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	4 cut(s)	12, 36, 226, 516
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	3 cut(s)	204, 501, 782
TasI	AATT	2 cut(s)	268, 776
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	3 cut(s)	451, 554, 791
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	2 cut(s)	321, 470
TseFI	GTSAC	2 cut(s)	15, 312
Tsp45I	GTSAC	2 cut(s)	15, 312
TspDTI	ATGAA	5 cut(s)	288, 397, 487, 600, 804
TspRI	CASTG	2 cut(s)	321, 470
XapI	RAATTY	1 cut(s)	776
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 714
XspI	CTAG	2 cut(s)	105, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.