Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

38442033 .. 38443114

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1253200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAAAAGTTACTGCGTGAAATTGTTCTAATTCTTAGTAAAAGAAGTATTGGGTTGATAAGAATTCCGAACAACTGTTTTACGGTGTATGCAAGAGATCTCTCGATCACTTGGGGCAGAGACAGTCGTTACTGGCGCTGGAACGTAGAAGACGGTGGTGACCCCATTGATGTTGCTGAACTGTTAGATGTATGTAGGCTAGAAGTGTACGGGAAGCTTGATACCGCATACCTGTCACCCGGAACTCTTTATGAAGTTGTATTTGTGGTCAAGCTGAATGCTAAAGAATATGGATGGGAAGAACCAGTCGAATTCACTCTCGAAACCCCTGCTGGTGACAAGCACACACGTAATGTTGATCTGATGCAAAAGCAGAGAGGAACATGGGTTGAGATCCCAGCCGGTGAATTTAGAGCATCGCCTGAGCAGTATGGCAACATGATTTTTTCGCTCCATCAACTTGGTGGGCAGTGGAAGAAAGGGCTTGTTATCAAGGGTGCCGAAATTCGTCCTAAAACTAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

176

Amino Acids

20.11

Weight (kDa)

8.8

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	25 - 171	4.9e-41	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	4 cut(s)	63, 311, 407, 504
AfaI	GTAC	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	347
AluBI	AGCT	2 cut(s)	217, 274
AluI	AGCT	2 cut(s)	217, 274
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	388
ApoI	RAATTY	4 cut(s)	63, 311, 407, 504
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	4 cut(s)	170, 228, 347, 416
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	156
BccI	CCATC	2 cut(s)	288, 462
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	139
BglII	AGATCT	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	354, 425
BpiI	GAAGAC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	350
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	137, 305
BseGI	GGATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	2 cut(s)	137, 305
BseYI	CCCAGC	1 cut(s)	397
BshNI	GGYRCC	1 cut(s)	497
BsiSI	CCGG	2 cut(s)	240, 402
BsmAI	GTCTC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	97, 105, 358, 393
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	499
BspPI	GGATC	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	137, 305
BssAI	RCCGGY	1 cut(s)	401
BssMI	GATC	4 cut(s)	97, 105, 358, 393
Bst4CI	ACNGT	5 cut(s)	77, 85, 125, 155, 183
BstBAI	YACGTR	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	35, 423
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	4 cut(s)	100, 108, 361, 396
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	4 cut(s)	97, 105, 358, 393
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	97, 393
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	2 cut(s)	97, 393
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	1 cut(s)	476
CfoI	GCGC	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	384, 439
CviJI	RGCY	5 cut(s)	199, 217, 274, 401, 484
CviKI_1	RGCY	5 cut(s)	199, 217, 274, 401, 484
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	35, 423
DpnI	GATC	4 cut(s)	99, 107, 360, 395
DpnII	GATC	4 cut(s)	97, 105, 358, 393
Eco91I	GGTNACC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	158
EcoRI	GAATTC	2 cut(s)	63, 311
FaeI	CATG	2 cut(s)	387, 442
FaiI	YATR	8 cut(s)	90, 193, 229, 252, 291, 385, 432, 440
FatI	CATG	2 cut(s)	383, 438
FokI	GGATG	1 cut(s)	306
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	137
GsaI	CCCAGC	1 cut(s)	401
HaeII	RGCGCY	1 cut(s)	139
HapII	CCGG	2 cut(s)	240, 402
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	387, 442
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	215
HpaII	CCGG	2 cut(s)	240, 402
HphI	GGTGA	4 cut(s)	170, 228, 347, 416
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	69, 363
Hpy188III	TCNNGA	2 cut(s)	103, 320
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	5 cut(s)	77, 85, 125, 155, 183
HpyCH4IV	ACGT	2 cut(s)	144, 349
HpyCH4V	TGCA	2 cut(s)	92, 367
HpyF3I	CTNAG	2 cut(s)	35, 423
HpySE526I	ACGT	2 cut(s)	144, 349
Hsp92II	CATG	2 cut(s)	387, 442
HspAI	GCGC	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	97, 105, 358, 393
LmnI	GCTCC	1 cut(s)	456
LweI	GCATC	2 cut(s)	354, 425
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	2 cut(s)	144, 349
MaeIII	GTNAC	5 cut(s)	9, 128, 158, 234, 335
MalI	GATC	4 cut(s)	99, 107, 360, 395
MboI	GATC	4 cut(s)	97, 105, 358, 393
MboII	GAAGA	3 cut(s)	161, 311, 487
MflI	RGATCY	2 cut(s)	97, 393
MluCI	AATT	6 cut(s)	21, 30, 63, 311, 407, 504
MnlI	CCTC	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	24
MspI	CCGG	2 cut(s)	240, 402
MspR9I	CCNGG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	283
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	97, 105, 358, 393
NlaIII	CATG	2 cut(s)	387, 442
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	3 cut(s)	158, 234, 335
PctI	GAATGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	24
Ppu21I	YACGTR	1 cut(s)	350
PspEI	GGTNACC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	499
PsuI	RGATCY	2 cut(s)	97, 393
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
Sau3AI	GATC	4 cut(s)	97, 105, 358, 393
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	5 cut(s)	147, 219, 234, 276, 352
SfaNI	GCATC	2 cut(s)	354, 425
Sse9I	AATT	6 cut(s)	21, 30, 63, 311, 407, 504
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	5 cut(s)	77, 85, 125, 155, 183
TaiI	ACGT	2 cut(s)	147, 352
TaqI	TCGA	3 cut(s)	104, 309, 321
TasI	AATT	6 cut(s)	21, 30, 63, 311, 407, 504
TscAI	CASTG	1 cut(s)	476
TseFI	GTSAC	3 cut(s)	158, 234, 335
Tsp45I	GTSAC	3 cut(s)	158, 234, 335
TspDTI	ATGAA	2 cut(s)	17, 267
TspRI	CASTG	1 cut(s)	476
XapI	RAATTY	4 cut(s)	63, 311, 407, 504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.