Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Forward (+)

15783415 .. 15784632

Gene Structure 1218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032488

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGGACAGGGTGGTCACAAGATGAGGCCTCACAGTCACAGCAGCTGAGTCCTGCAGAAGCAAGTAACAAGGCAGTAGTGGAGAAAGTAACAGAAGCAGTGCCTAGTGGCTCTAAACCCATGGCAAAAGTGGAGAAATCAGCTAGTTTTCAGGCCAAATCTTCAGCTGATCACAACCAGGAGGCCAAAGTAGTGAAAGAAGTCAAGGGAACAGAGAAACCGACAGTTACACAAGTGAAGCAGCAGCAGCAACCGCTGCAGCAGCTCCCACATAATTACAAAGCTATTGTGAAAGATGCCGACACTCCAATCAACAAGTCACCGGAACATCTGTTTGTACATCTCTATGCTGGAATACTCTTAAACCAAAAGAGGAAGAAGTACTGGGTTGACAAGAAGTCCAACAACTGCTTCATGGTGTATCCAAGGGATCTCACAATCACTTGGGCTGAAGACAATCGTTACTGGCACTGGCCTTCCCTGGAAGAAACAAGTAATGTCTTCATCGATGCAGCTGAACTGTTAAATGTATGCTGGCTTGAAGTTCATGGAAAAATTGATTCCACAAAGCTGTCACCAGGAACTCTATATGAAGTAGTATTTATAGTGATGTTGAAAGCTGCAGCTTATGGATGGAAAGTTCCTGTCAATGTCAGACTCAGTCTCCCAGATGGTAACAAGCAAGAACGTAAAGCTGATCTGGATAAAATCCCTAGAGAACAATGGACAGAGATACCAGTAGGCGAGTTTAGAGCATCAACAGGATTACCTGGGAACATTGAATTTTCGATGTATGAATATGAAGATGGGAAATGGAAGAGTGGACTTCTGATCAAGGGCGTTGCCATTCGGCCTAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

288

Amino Acids

32.38

Weight (kDa)

8.59

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	136 - 285	2.1e-45	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	782
AcuI	CTGAAG	2 cut(s)	147, 471
AfaI	GTAC	2 cut(s)	339, 383
AgsI	TTSAA	3 cut(s)	542, 616, 782
AhdI	GACNNNNNGTC	1 cut(s)	397
AjnI	CCWGG	4 cut(s)	177, 480, 577, 769
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AloI	GAACNNNNNNTCC	2 cut(s)	624, 656
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	1 cut(s)	438
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	5 cut(s)	27, 153, 183, 473, 851
ApoI	RAATTY	1 cut(s)	782
AsuHPI	GGTGA	2 cut(s)	312, 567
BbsI	GAAGAC	2 cut(s)	459, 493
BccI	CCATC	3 cut(s)	627, 665, 800
BciT130I	CCWGG	4 cut(s)	179, 482, 579, 771
BciVI	GTATCC	1 cut(s)	432
BclI	TGATCA	2 cut(s)	169, 831
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	3 cut(s)	105, 144, 714
BfmI	CTRYAG	3 cut(s)	54, 257, 621
BfuI	GTATCC	1 cut(s)	432
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	4 cut(s)	179, 482, 579, 771
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmrFI	CCNGG	4 cut(s)	179, 482, 579, 771
BmrI	ACTGGG	1 cut(s)	394
BmsI	GCATC	3 cut(s)	286, 499, 764
BmuI	ACTGGG	1 cut(s)	394
BpiI	GAAGAC	2 cut(s)	459, 493
Bsa29I	ATCGAT	1 cut(s)	507
BsaJI	CCNNGG	4 cut(s)	120, 425, 480, 770
BsaWI	WCCGGW	1 cut(s)	322
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bse1I	ACTGG	4 cut(s)	389, 470, 476, 737
BseBI	CCWGG	4 cut(s)	179, 482, 579, 771
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	4 cut(s)	120, 425, 480, 770
BseGI	GGATG	1 cut(s)	638
BseMII	CTCAG	2 cut(s)	38, 673
BseNI	ACTGG	4 cut(s)	389, 470, 476, 737
BshFI	GGCC	5 cut(s)	29, 155, 185, 475, 853
BshVI	ATCGAT	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	668
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	5 cut(s)	29, 155, 185, 475, 853
Bsp1407I	TGTACA	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	169, 430, 697, 831
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	5 cut(s)	29, 155, 185, 475, 853
BspCNI	CTCAG	2 cut(s)	39, 672
BspDI	ATCGAT	1 cut(s)	507
BspMAI	CTGCAG	3 cut(s)	58, 261, 625
BspPI	GGATC	1 cut(s)	438
BsrGI	TGTACA	1 cut(s)	337
BsrI	ACTGG	4 cut(s)	389, 470, 476, 737
BssECI	CCNNGG	4 cut(s)	120, 425, 480, 770
BssMI	GATC	4 cut(s)	169, 430, 697, 831
BssT1I	CCWWGG	2 cut(s)	120, 425
Bst2UI	CCWGG	4 cut(s)	179, 482, 579, 771
Bst4CI	ACNGT	3 cut(s)	36, 226, 522
Bst6I	CTCTTC	1 cut(s)	812
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	2 cut(s)	47, 659
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	638
BstKTI	GATC	4 cut(s)	172, 433, 700, 834
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	4 cut(s)	169, 430, 697, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	247, 253, 256, 262
BstNI	CCWGG	4 cut(s)	179, 482, 579, 771
BstSCI	CCNGG	4 cut(s)	177, 480, 577, 769
BstSFI	CTRYAG	3 cut(s)	54, 257, 621
BstV2I	GAAGAC	2 cut(s)	459, 493
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu15I	ATCGAT	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	5 cut(s)	29, 155, 185, 475, 853
BsuTUI	ATCGAT	1 cut(s)	507
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	638
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 469
Cac8I	GCNNGC	1 cut(s)	536
CaiI	CAGNNNCTG	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	338, 382
CviAII	CATG	3 cut(s)	121, 415, 548
CviQI	GTAC	2 cut(s)	338, 382
DdeI	CTNAG	2 cut(s)	47, 659
DpnI	GATC	4 cut(s)	171, 432, 699, 833
DpnII	GATC	4 cut(s)	169, 430, 697, 831
DrdI	GACNNNNNNGTC	1 cut(s)	13
DriI	GACNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	812
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	812
Eco130I	CCWWGG	2 cut(s)	120, 425
Eco147I	AGGCCT	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	147, 471
EcoRII	CCWGG	4 cut(s)	177, 480, 577, 769
EcoT14I	CCWWGG	2 cut(s)	120, 425
ErhI	CCWWGG	2 cut(s)	120, 425
FaeI	CATG	3 cut(s)	124, 418, 551
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	3 cut(s)	120, 414, 547
FbaI	TGATCA	2 cut(s)	169, 831
FokI	GGATG	1 cut(s)	645
FspBI	CTAG	3 cut(s)	105, 144, 714
HaeIII	GGCC	5 cut(s)	29, 155, 185, 475, 853
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	3 cut(s)	124, 418, 551
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	3 cut(s)	49, 560, 657
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	2 cut(s)	312, 567
Hpy166II	GTNNAC	2 cut(s)	391, 824
Hpy188I	TCNGA	2 cut(s)	656, 831
Hpy188III	TCNNGA	1 cut(s)	701
Hpy8I	GTNNAC	2 cut(s)	391, 824
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	3 cut(s)	36, 226, 522
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	4 cut(s)	56, 259, 512, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	247, 253, 256, 262
HpyF3I	CTNAG	2 cut(s)	47, 659
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	3 cut(s)	124, 418, 551
Ksp22I	TGATCA	2 cut(s)	169, 831
Kzo9I	GATC	4 cut(s)	169, 430, 697, 831
LmnI	GCTCC	1 cut(s)	270
LweI	GCATC	3 cut(s)	286, 499, 764
MaeI	CTAG	3 cut(s)	105, 144, 714
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	9 cut(s)	15, 36, 65, 88, 226, 318, 461, 573, 674
MalI	GATC	4 cut(s)	171, 432, 699, 833
MboI	GATC	4 cut(s)	169, 430, 697, 831
MboII	GAAGA	7 cut(s)	153, 388, 464, 493, 497, 815, 829
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	3 cut(s)	274, 555, 782
MlyI	GAGTC	2 cut(s)	58, 651
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	4 cut(s)	19, 40, 175, 366
MseI	TTAA	2 cut(s)	362, 524
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	4 cut(s)	46, 167, 256, 515
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	4 cut(s)	179, 482, 579, 771
MvaI	CCWGG	4 cut(s)	179, 482, 579, 771
MwoI	GCNNNNNNNGC	4 cut(s)	247, 253, 256, 262
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	4 cut(s)	169, 430, 697, 831
NlaIII	CATG	3 cut(s)	124, 418, 551
NmuCI	GTSAC	4 cut(s)	15, 36, 318, 573
PceI	AGGCCT	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	560
PflFI	GACNNNGTC	1 cut(s)	660
PleI	GAGTC	2 cut(s)	57, 651
PpsI	GAGTC	2 cut(s)	57, 651
Psp6I	CCWGG	4 cut(s)	177, 480, 577, 769
PspGI	CCWGG	4 cut(s)	177, 480, 577, 769
PstI	CTGCAG	3 cut(s)	58, 261, 625
PstNI	CAGNNNCTG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	660
PvuII	CAGCTG	3 cut(s)	46, 167, 515
RsaI	GTAC	2 cut(s)	339, 383
RsaNI	GTAC	2 cut(s)	338, 382
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	362, 524
Sau3AI	GATC	4 cut(s)	169, 430, 697, 831
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	2 cut(s)	58, 651
ScrFI	CCNGG	4 cut(s)	179, 482, 579, 771
SfaNI	GCATC	3 cut(s)	286, 499, 764
SfcI	CTRYAG	3 cut(s)	54, 257, 621
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	3 cut(s)	274, 555, 782
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	3 cut(s)	105, 144, 714
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	177, 480, 577, 769
StyI	CCWWGG	2 cut(s)	120, 425
TaaI	ACNGT	3 cut(s)	36, 226, 522
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	2 cut(s)	507, 788
TasI	AATT	3 cut(s)	274, 555, 782
TatI	WGTACW	2 cut(s)	337, 381
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	2 cut(s)	362, 524
Tru9I	TTAA	2 cut(s)	362, 524
TscAI	CASTG	2 cut(s)	105, 476
TseFI	GTSAC	4 cut(s)	15, 36, 318, 573
Tsp45I	GTSAC	4 cut(s)	15, 36, 318, 573
TspDTI	ATGAA	6 cut(s)	403, 493, 536, 606, 810, 816
TspRI	CASTG	2 cut(s)	105, 476
Tth111I	GACNNNGTC	1 cut(s)	660
XapI	RAATTY	1 cut(s)	782
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XspI	CTAG	3 cut(s)	105, 144, 714
ZrmI	AGTACT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.