Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00671

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Forward (+)

1078 .. 2278

Gene Structure 1201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAGTACAGGGTGGTCACGAGATGAGGCCTCACAGTCGCAGCAGCTGAGTCCGGGAGAACCAAGTAACAAGGCAGTAGTGGAGAGAGTAACAGAAGCAACGCCTAGTGGCTCTAAACCCATGGCAAAAGTGGAGAAATCAGCTAGTTTTCAGGCCAAACCTTCAGCTGATCAGAACCAGGAGGCCAAAGTAGTGAAAGAAGTCAAGGGTACAGAGAAACTGTCGGTCAAGCAGCAGCAGCTGCCACATAATTACGAAGCTATTTTGATTGATGCCGACACTCCCATCAACAAGTCACCAGAACACCTGTTTGGACATCTCTATGCTGGAATACTTTTAAACCAAAAGAGGAAGAAGTATTGGGTTGACAAGGAGTCCAACAACTGCTTCATGGTGTATCCGAGGGATCTCTCAATCTCTTGGGCTGAAGACAATCGTTACTGGCACTGGCCTTCACTGGAAGAAACAAGTAATGTCTTCATTGATGCAGCTGAACTGTTAAATGTATGCTGGCTTGAAGTTCGTGGAAATATTGATTCCACAAAGCTGTCACCAGGAACTCTATATGAAGTAGTATTTCTAGTGATGTTGAAAGCTGCAGCATATGGATGGAAAGTTCCTGTGAATGTCAGACTCACTCTCCCAGATGGTAACAAGCAAGAACGTAATGCTTATCTGAATAAAATCCCAAGAGAACAATGGACAGAGATACCAGTAGGCGAGTTTAGAGCATCAACAGGATTACTTGGGAACATTGAATTTTCAATGTATGAATATGACGATGAAAAATGGAAGAGTGGACTTCTGATCAAGGGCGTTGCCATTTGGCCTAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

279

Amino Acids

31.65

Weight (kDa)

6.16

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	128 - 277	4.6e-44	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	758
AcuI	CTGAAG	2 cut(s)	147, 447
AfaI	GTAC	2 cut(s)	7, 211
AgsI	TTSAA	4 cut(s)	518, 592, 758, 765
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	177, 553
AjuI	GAANNNNNNNTTGG	4 cut(s)	294, 326, 371, 403
AloI	GAACNNNNNNTCC	2 cut(s)	600, 632
AluBI	AGCT	8 cut(s)	46, 143, 167, 241, 260, 491, 547, 596
AluI	AGCT	8 cut(s)	46, 143, 167, 241, 260, 491, 547, 596
AlwI	GGATC	1 cut(s)	414
AlwNI	CAGNNNCTG	2 cut(s)	46, 241
AoxI	GGCC	5 cut(s)	27, 153, 183, 449, 827
ApeKI	GCWGC	9 cut(s)	40, 43, 232, 235, 238, 241, 488, 596, 599
ApoI	RAATTY	1 cut(s)	758
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	288, 543
BauI	CACGAG	1 cut(s)	18
BbsI	GAAGAC	2 cut(s)	435, 469
BbvI	GCAGC	9 cut(s)	52, 55, 228, 244, 247, 250, 500, 583, 611
BccI	CCATC	3 cut(s)	293, 603, 641
BciT130I	CCWGG	2 cut(s)	179, 555
BciVI	GTATCC	1 cut(s)	408
BclI	TGATCA	2 cut(s)	169, 807
BcnI	CCSGG	1 cut(s)	54
BfaI	CTAG	3 cut(s)	105, 144, 581
BfmI	CTRYAG	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	9 cut(s)	41, 44, 233, 236, 239, 242, 489, 597, 600
BlsI	GCNGC	9 cut(s)	42, 45, 234, 237, 240, 243, 490, 598, 601
Bme1390I	CCNGG	3 cut(s)	54, 179, 555
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmrFI	CCNGG	3 cut(s)	54, 179, 555
BmsI	GCATC	3 cut(s)	262, 475, 740
BpiI	GAAGAC	2 cut(s)	435, 469
BpuMI	CCSGG	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	120, 401
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bse1I	ACTGG	4 cut(s)	446, 452, 462, 713
BseBI	CCWGG	2 cut(s)	179, 555
BseDI	CCNNGG	2 cut(s)	120, 401
BseGI	GGATG	1 cut(s)	614
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	4 cut(s)	446, 452, 462, 713
BseXI	GCAGC	9 cut(s)	52, 55, 228, 244, 247, 250, 500, 583, 611
BshFI	GGCC	5 cut(s)	29, 155, 185, 451, 829
BsiSI	CCGG	1 cut(s)	53
BsnI	GGCC	5 cut(s)	29, 155, 185, 451, 829
Bsp143I	GATC	3 cut(s)	169, 406, 807
Bsp19I	CCATGG	1 cut(s)	120
BspANI	GGCC	5 cut(s)	29, 155, 185, 451, 829
BspCNI	CTCAG	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	1 cut(s)	414
BsrI	ACTGG	4 cut(s)	446, 452, 462, 713
BssECI	CCNNGG	2 cut(s)	120, 401
BssMI	GATC	3 cut(s)	169, 406, 807
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	179, 555
Bst4CI	ACNGT	3 cut(s)	36, 222, 498
Bst6I	CTCTTC	1 cut(s)	788
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	614
BstKTI	GATC	3 cut(s)	172, 409, 810
BstMBI	GATC	3 cut(s)	169, 406, 807
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 241
BstNI	CCWGG	2 cut(s)	179, 555
BstSCI	CCNGG	3 cut(s)	52, 177, 553
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	9 cut(s)	52, 55, 228, 244, 247, 250, 500, 583, 611
BstV2I	GAAGAC	2 cut(s)	435, 469
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	5 cut(s)	29, 155, 185, 451, 829
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	614
BtsIMutI	CAGTG	2 cut(s)	445, 455
Cac8I	GCNNGC	1 cut(s)	512
CaiI	CAGNNNCTG	2 cut(s)	46, 241
Csp6I	GTAC	2 cut(s)	6, 210
CviAII	CATG	2 cut(s)	121, 391
CviQI	GTAC	2 cut(s)	6, 210
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	3 cut(s)	171, 408, 809
DpnII	GATC	3 cut(s)	169, 406, 807
DraI	TTTAAA	1 cut(s)	339
DriI	GACNNNNNGTC	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	788
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	788
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	147, 447
EcoRII	CCWGG	2 cut(s)	177, 553
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	124, 394
FatI	CATG	2 cut(s)	120, 390
FauNDI	CATATG	1 cut(s)	604
FbaI	TGATCA	2 cut(s)	169, 807
Fnu4HI	GCNGC	9 cut(s)	41, 44, 233, 236, 239, 242, 489, 597, 600
FokI	GGATG	1 cut(s)	621
Fsp4HI	GCNGC	9 cut(s)	41, 44, 233, 236, 239, 242, 489, 597, 600
FspBI	CTAG	3 cut(s)	105, 144, 581
GluI	GCNGC	9 cut(s)	41, 44, 233, 236, 239, 242, 489, 597, 600
HaeIII	GGCC	5 cut(s)	29, 155, 185, 451, 829
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	2 cut(s)	124, 394
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	4 cut(s)	49, 374, 536, 633
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	288, 543
Hpy166II	GTNNAC	2 cut(s)	367, 800
Hpy188I	TCNGA	5 cut(s)	174, 402, 632, 678, 807
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	2 cut(s)	367, 800
HpyAV	CCTTC	2 cut(s)	171, 462
HpyCH4III	ACNGT	3 cut(s)	36, 222, 498
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	2 cut(s)	488, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 241
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	2 cut(s)	124, 394
Ksp22I	TGATCA	2 cut(s)	169, 807
Kzo9I	GATC	3 cut(s)	169, 406, 807
Lsp1109I	GCAGC	9 cut(s)	52, 55, 228, 244, 247, 250, 500, 583, 611
LweI	GCATC	3 cut(s)	262, 475, 740
MaeI	CTAG	3 cut(s)	105, 144, 581
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	7 cut(s)	15, 65, 88, 294, 437, 549, 650
MalI	GATC	3 cut(s)	171, 408, 809
MboI	GATC	3 cut(s)	169, 406, 807
MboII	GAAGA	5 cut(s)	364, 440, 469, 473, 805
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	2 cut(s)	250, 758
MlyI	GAGTC	3 cut(s)	58, 383, 627
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	5 cut(s)	19, 40, 175, 342, 396
MseI	TTAA	2 cut(s)	338, 500
MslI	CAYNNNNRTG	2 cut(s)	321, 607
MspA1I	CMGCKG	4 cut(s)	46, 167, 241, 491
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	3 cut(s)	54, 179, 555
MvaI	CCWGG	2 cut(s)	179, 555
MwoI	GCNNNNNNNGC	2 cut(s)	238, 241
NciI	CCSGG	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	3 cut(s)	169, 406, 807
NlaIII	CATG	2 cut(s)	124, 394
NmuCI	GTSAC	3 cut(s)	15, 294, 549
PceI	AGGCCT	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	9 cut(s)	42, 45, 234, 237, 240, 243, 490, 598, 601
PleI	GAGTC	3 cut(s)	57, 382, 627
PpsI	GAGTC	3 cut(s)	57, 382, 627
Psp6I	CCWGG	2 cut(s)	177, 553
PspGI	CCWGG	2 cut(s)	177, 553
PstI	CTGCAG	1 cut(s)	601
PstNI	CAGNNNCTG	2 cut(s)	46, 241
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	4 cut(s)	46, 167, 241, 491
RsaI	GTAC	2 cut(s)	7, 211
RsaNI	GTAC	2 cut(s)	6, 210
RseI	CAYNNNNRTG	2 cut(s)	321, 607
SaqAI	TTAA	2 cut(s)	338, 500
SatI	GCNGC	9 cut(s)	41, 44, 233, 236, 239, 242, 489, 597, 600
Sau3AI	GATC	3 cut(s)	169, 406, 807
SchI	GAGTC	3 cut(s)	58, 383, 627
ScrFI	CCNGG	3 cut(s)	54, 179, 555
SfaNI	GCATC	3 cut(s)	262, 475, 740
SfcI	CTRYAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	2 cut(s)	321, 607
Sse9I	AATT	2 cut(s)	250, 758
SseBI	AGGCCT	1 cut(s)	29
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	3 cut(s)	105, 144, 581
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	52, 177, 553
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	3 cut(s)	36, 222, 498
TaiI	ACGT	1 cut(s)	667
TaqII	GACCGA	1 cut(s)	214
TasI	AATT	2 cut(s)	250, 758
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	338, 500
Tru9I	TTAA	2 cut(s)	338, 500
TscAI	CASTG	2 cut(s)	452, 462
TseFI	GTSAC	3 cut(s)	15, 294, 549
TseI	GCWGC	9 cut(s)	40, 43, 232, 235, 238, 241, 488, 596, 599
Tsp45I	GTSAC	3 cut(s)	15, 294, 549
TspDTI	ATGAA	5 cut(s)	379, 469, 582, 786, 798
TspRI	CASTG	2 cut(s)	452, 462
XapI	RAATTY	1 cut(s)	758
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 696
XspI	CTAG	3 cut(s)	105, 144, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.