AT4G19850

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001185
Physical Location & Seq
Forward (+)
10776591 .. 10777588
998 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19850.1

Sequence Viewer

Length: 534 bp
ATGTTGGAATCTCTTATTCAGAAGAACTTGATAGAGGAAGATGAGGGTAAAGCGAAGAAAAACTGTTTCATGTTGTACGCGAGAGATCTCTCAATTACATGGGCAGAGTCTCAAACAAATAAATATTGGAGTTGGTTCTCTGATCTTGACCAAACATCAAGTGATGTAAGAACTGAGGTTGCAAAGATGGAACGAGTAGCTTGGTTAGAAGTTGTCGGAAAATTCGAGACGGAGAAACTAACTCCCAACAGTTTGTACGAGGTTGTGTTTGTGGTCAAGCTAATCGATTCTGCTAAAGGATGGGATTTTCGGGTTAACTTCAAATTGGTTTTGCCAACCGGAGAAACCAAAGAGCGGCGAGAGAATGTGAACCTGTTAGAAAGGAACAAGTGGGTGGAGATTCCGGCCGGTGAGTTCATGATATCACCAGAACATCTCTCTGGCAAGATTGAGTTTTCGATGTTGGAGGTTAAAAGTGACCAGTGGAAGTCTGGTCTTATTGTGAAAGGTGTTGCTATTAGACCCAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

177

Amino Acids

20.55

Weight (kDa)

5.66

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 20 - 175 1.9e-42 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 355
AccII CGCG 1 cut(s) 80
AciI CCGC 1 cut(s) 355
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 2 cut(s) 77, 257
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 1 cut(s) 322
AluBI AGCT 2 cut(s) 200, 280
AluI AGCT 2 cut(s) 200, 280
Alw26I GTCTC 2 cut(s) 114, 221
AoxI GGCC 1 cut(s) 405
ApoI RAATTY 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 417, 422
BccI CCATC 2 cut(s) 181, 294
BcoDI GTCTC 2 cut(s) 114, 221
BglII AGATCT 1 cut(s) 85
BisI GCNGC 1 cut(s) 356
BlsI GCNGC 1 cut(s) 357
Bsa29I ATCGAT 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 285
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 481
BseX3I CGGCCG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 1 cut(s) 407
BshVI ATCGAT 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 408
BsiSI CCGG 3 cut(s) 339, 404, 408
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 2 cut(s) 114, 221
BsmBI CGTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 407
Bsp143I GATC 2 cut(s) 85, 142
BspACI CCGC 1 cut(s) 355
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 285
BspFNI CGCG 1 cut(s) 80
BspHI TCATGA 1 cut(s) 417
BsrBI CCGCTC 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 1 cut(s) 481
BssAI RCCGGY 1 cut(s) 407
BssMI GATC 2 cut(s) 85, 142
Bst4CI ACNGT 2 cut(s) 65, 251
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 305
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 2 cut(s) 88, 145
BstMAI GTCTC 2 cut(s) 114, 221
BstMBI GATC 2 cut(s) 85, 142
BstMCI CGRYCG 1 cut(s) 408
BstUI CGCG 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BstZI CGGCCG 1 cut(s) 405
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 1 cut(s) 407
BsuTUI ATCGAT 1 cut(s) 285
BtsCI GGATG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 488
CciI TCATGA 1 cut(s) 417
Cfr10I RCCGGY 1 cut(s) 407
ClaI ATCGAT 1 cut(s) 285
Csp6I GTAC 2 cut(s) 76, 256
CviAII CATG 3 cut(s) 70, 99, 418
CviJI RGCY 3 cut(s) 200, 280, 407
CviKI_1 RGCY 3 cut(s) 200, 280, 407
CviQI GTAC 2 cut(s) 76, 256
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 87, 144
DpnII GATC 2 cut(s) 85, 142
EaeI YGGCCR 1 cut(s) 405
EagI CGGCCG 1 cut(s) 405
EclXI CGGCCG 1 cut(s) 405
Eco32I GATATC 1 cut(s) 423
Eco52I CGGCCG 1 cut(s) 405
EcoRV GATATC 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 3 cut(s) 73, 102, 421
FaiI YATR 3 cut(s) 71, 100, 419
FatI CATG 3 cut(s) 69, 98, 417
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 356
HaeIII GGCC 1 cut(s) 407
HapII CCGG 3 cut(s) 339, 404, 408
Hin1II CATG 3 cut(s) 73, 102, 421
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 4 cut(s) 8, 107, 287, 400
HpaI GTTAAC 1 cut(s) 316
HpaII CCGG 3 cut(s) 339, 404, 408
HphI GGTGA 2 cut(s) 417, 422
Hpy166II GTNNAC 2 cut(s) 316, 370
Hpy188I TCNGA 3 cut(s) 21, 142, 218
Hpy188III TCNNGA 3 cut(s) 146, 226, 418
Hpy8I GTNNAC 2 cut(s) 316, 370
HpyCH4III ACNGT 2 cut(s) 65, 251
HpyCH4V TGCA 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 3 cut(s) 73, 102, 421
KspAI GTTAAC 1 cut(s) 316
Kzo9I GATC 2 cut(s) 85, 142
LpnPI CCDG 8 cut(s) 352, 386, 417, 421, 426, 441, 477, 494
MaeIII GTNAC 1 cut(s) 476
MalI GATC 2 cut(s) 87, 144
MbiI CCGCTC 1 cut(s) 355
MboI GATC 2 cut(s) 85, 142
MboII GAAGA 3 cut(s) 34, 50, 67
MflI RGATCY 1 cut(s) 85
MluCI AATT 4 cut(s) 93, 221, 323, 529
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 196, 444
MnlI CCTC 5 cut(s) 28, 37, 169, 253, 460
MseI TTAA 2 cut(s) 315, 471
MspI CCGG 3 cut(s) 339, 404, 408
MvnI CGCG 1 cut(s) 80
NdeII GATC 2 cut(s) 85, 142
NlaIII CATG 3 cut(s) 73, 102, 421
NmuCI GTSAC 1 cut(s) 476
PagI TCATGA 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 3 cut(s) 8, 287, 400
PkrI GCNGC 1 cut(s) 357
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 2 cut(s) 77, 257
RsaNI GTAC 2 cut(s) 76, 256
SaqAI TTAA 2 cut(s) 315, 471
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 2 cut(s) 85, 142
SchI GAGTC 1 cut(s) 116
SetI ASST 7 cut(s) 180, 202, 264, 282, 375, 471, 511
Sse9I AATT 4 cut(s) 93, 221, 323, 529
SsiI CCGC 1 cut(s) 355
SspI AATATT 1 cut(s) 125
TaaI ACNGT 2 cut(s) 65, 251
TaqI TCGA 3 cut(s) 225, 285, 458
TasI AATT 4 cut(s) 93, 221, 323, 529
TauI GCSGC 1 cut(s) 358
TfiI GAWTC 3 cut(s) 8, 287, 400
Tru1I TTAA 2 cut(s) 315, 471
Tru9I TTAA 2 cut(s) 315, 471
TscAI CASTG 1 cut(s) 488
TseFI GTSAC 1 cut(s) 476
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 58, 406
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 488
XapI RAATTY 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.