Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023185.1

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

11272 .. 12189

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023185.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggggacagggtggtcacaagatgaagcctcacagtcgcagcagctgaggcctggagaaccaactcctaatcgattttgtgcgactaagtactgggttgacaagaagtccaacaactgcttcatggtgtatccaagggatctcacaatcacttgggctgacgacaaacgttactggcactggccttccctggcagaaacaagggtatgctggcttgaagttcatggaaaaattgattccacaaagctgtcaccaggaactctatatgaagtagtatttatagtgatgttgaaagctgcagcttatggatggaaagttcctgtcaatgtcagactcagtctcccagatggtaacaagcaagagcgtaaagctgatctgaataaaatcccaagagaacaatggacagagataccagtaggcgagtttagagcatcaccaggatttcttgggaacattgaaattttgatgtatcaatatgatgatggcgggatatggaagagcggacttttgatgaagggcgttgccgttcggcctaaaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

180

Amino Acids

20.63

Weight (kDa)

8.93

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccBSI	CCGCTC	1 cut(s)	501
AciI	CCGC	2 cut(s)	486, 501
AclI	AACGTT	1 cut(s)	169
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	459
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	218, 292, 458
AhdI	GACNNNNNGTC	1 cut(s)	106
AjnI	CCWGG	4 cut(s)	52, 189, 253, 436
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	6 cut(s)	46, 247, 296, 302, 371, 540
AluI	AGCT	6 cut(s)	46, 247, 296, 302, 371, 540
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	147
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	3 cut(s)	50, 182, 530
ApeKI	GCWGC	4 cut(s)	40, 43, 296, 299
ApoI	RAATTY	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	243, 426
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	4 cut(s)	52, 55, 283, 311
BccI	CCATC	3 cut(s)	303, 341, 476
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	4 cut(s)	54, 191, 255, 438
BciVI	GTATCC	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	4 cut(s)	41, 44, 297, 300
BlsI	GCNGC	4 cut(s)	42, 45, 298, 301
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	4 cut(s)	54, 191, 255, 438
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmrFI	CCNGG	4 cut(s)	54, 191, 255, 438
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	440
BmuI	ACTGGG	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	134, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bse1I	ACTGG	4 cut(s)	98, 179, 185, 413
BseBI	CCWGG	4 cut(s)	54, 191, 255, 438
BseCI	ATCGAT	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	134, 189
BseGI	GGATG	1 cut(s)	314
BseMII	CTCAG	2 cut(s)	38, 349
BseNI	ACTGG	4 cut(s)	98, 179, 185, 413
BseXI	GCAGC	4 cut(s)	52, 55, 283, 311
BshFI	GGCC	3 cut(s)	52, 184, 532
BshVI	ATCGAT	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	3 cut(s)	52, 184, 532
Bsp143I	GATC	2 cut(s)	139, 373
BspACI	CCGC	2 cut(s)	486, 501
BspANI	GGCC	3 cut(s)	52, 184, 532
BspCNI	CTCAG	2 cut(s)	39, 348
BspDI	ATCGAT	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	501
BsrI	ACTGG	4 cut(s)	98, 179, 185, 413
BssECI	CCNNGG	2 cut(s)	134, 189
BssMI	GATC	2 cut(s)	139, 373
BssT1I	CCWWGG	1 cut(s)	134
Bst2UI	CCWGG	4 cut(s)	54, 191, 255, 438
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	3 cut(s)	47, 87, 335
BstF5I	GGATG	1 cut(s)	314
BstKTI	GATC	2 cut(s)	142, 376
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	2 cut(s)	139, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	4 cut(s)	54, 191, 255, 438
BstSCI	CCNGG	4 cut(s)	52, 189, 253, 436
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	4 cut(s)	52, 55, 283, 311
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
Bsu15I	ATCGAT	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	52, 184, 532
BsuTUI	ATCGAT	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	124, 224
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	47, 87, 335
DpnI	GATC	2 cut(s)	141, 375
DpnII	GATC	2 cut(s)	139, 373
DrdI	GACNNNNNNGTC	1 cut(s)	13
DriI	GACNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	491
Eam1105I	GACNNNNNGTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	134
Eco147I	AGGCCT	1 cut(s)	52
EcoRII	CCWGG	4 cut(s)	52, 189, 253, 436
EcoT14I	CCWWGG	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	2 cut(s)	127, 227
FaiI	YATR	9 cut(s)	125, 208, 225, 265, 267, 281, 306, 477, 493
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	123, 223
FauI	CCCGC	1 cut(s)	479
Fnu4HI	GCNGC	4 cut(s)	41, 44, 297, 300
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	4 cut(s)	41, 44, 297, 300
GluI	GCNGC	4 cut(s)	41, 44, 297, 300
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	52, 184, 532
Hin1II	CATG	2 cut(s)	127, 227
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	236, 333
HphI	GGTGA	2 cut(s)	243, 426
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	332, 378
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	195, 508
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	3 cut(s)	47, 87, 335
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	127, 227
Kzo9I	GATC	2 cut(s)	139, 373
LguI	GCTCTTC	1 cut(s)	491
Lsp1109I	GCAGC	4 cut(s)	52, 55, 283, 311
LweI	GCATC	1 cut(s)	440
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	4 cut(s)	15, 170, 249, 350
MalI	GATC	2 cut(s)	141, 375
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	2 cut(s)	139, 373
MboII	GAAGA	1 cut(s)	508
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	2 cut(s)	231, 459
MlyI	GAGTC	1 cut(s)	327
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	2 cut(s)	40, 42
MspA1I	CMGCKG	1 cut(s)	46
MspR9I	CCNGG	4 cut(s)	54, 191, 255, 438
MvaI	CCWGG	4 cut(s)	54, 191, 255, 438
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	139, 373
NlaIII	CATG	2 cut(s)	127, 227
NmuCI	GTSAC	2 cut(s)	15, 249
PceI	AGGCCT	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	236
PflFI	GACNNNGTC	1 cut(s)	336
PkrI	GCNGC	4 cut(s)	42, 45, 298, 301
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
Psp1406I	AACGTT	1 cut(s)	169
Psp6I	CCWGG	4 cut(s)	52, 189, 253, 436
PspGI	CCWGG	4 cut(s)	52, 189, 253, 436
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	139
PsyI	GACNNNGTC	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	491
SatI	GCNGC	4 cut(s)	41, 44, 297, 300
Sau3AI	GATC	2 cut(s)	139, 373
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	4 cut(s)	54, 191, 255, 438
SetI	ASST	7 cut(s)	48, 172, 249, 298, 304, 373, 542
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	1 cut(s)	297
Sse9I	AATT	2 cut(s)	231, 459
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	2 cut(s)	486, 501
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	4 cut(s)	52, 189, 253, 436
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	73
TasI	AATT	2 cut(s)	231, 459
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	236
TscAI	CASTG	1 cut(s)	185
TseFI	GTSAC	2 cut(s)	15, 249
TseI	GCWGC	4 cut(s)	40, 43, 296, 299
Tsp45I	GTSAC	2 cut(s)	15, 249
TspDTI	ATGAA	5 cut(s)	39, 112, 212, 282, 527
TspRI	CASTG	1 cut(s)	185
Tth111I	GACNNNGTC	1 cut(s)	336
XapI	RAATTY	1 cut(s)	459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.