Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8402699.1

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

19 .. 408

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8402699.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggggacagggtggtcacaagatgaggcctcacagtcacagcagctgagtcctgaagcaagtaacaaggcagtagtggagaaagtaacagaagcagcgcctagtggctctaaacccatggcaaaagtggagaaatcagctagttttcaggccaaatcttcagctgatcacaaccaggaggccaaagtagtgaaagaagtcaagggaacagagaaaccgacagttacacaagtgaagcagcagccgcaaccgctgcagcagctcccacataattacaaagctattgtgaaagatgccgacactccaatcaacaagtcaccggaacatctgtttgtacatctccatgctggaatactcttaaaccaaaagaggaaggcaagcccttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

129

Amino Acids

13.97

Weight (kDa)

9.33

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AciI	CCGC	2 cut(s)	245, 251
AcuI	CTGAAG	2 cut(s)	75, 144
AfaI	GTAC	1 cut(s)	336
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	5 cut(s)	46, 140, 164, 262, 281
AluI	AGCT	5 cut(s)	46, 140, 164, 262, 281
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	3 cut(s)	27, 150, 180
ApeKI	GCWGC	7 cut(s)	43, 95, 238, 241, 253, 256, 259
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	309
BbvI	GCAGC	7 cut(s)	55, 107, 240, 250, 253, 268, 271
BciT130I	CCWGG	1 cut(s)	176
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	2 cut(s)	102, 141
BfmI	CTRYAG	1 cut(s)	254
BfoI	RGCGCY	1 cut(s)	101
BisI	GCNGC	8 cut(s)	44, 96, 239, 242, 245, 254, 257, 260
BlsI	GCNGC	8 cut(s)	45, 97, 240, 243, 246, 255, 258, 261
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	7 cut(s)	55, 107, 240, 250, 253, 268, 271
BshFI	GGCC	3 cut(s)	29, 152, 182
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	3 cut(s)	29, 152, 182
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	2 cut(s)	245, 251
BspANI	GGCC	3 cut(s)	29, 152, 182
BspCNI	CTCAG	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	258
BsrGI	TGTACA	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	36, 223
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 250, 253, 259
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	254
BstV1I	GCAGC	7 cut(s)	55, 107, 240, 250, 253, 268, 271
BsuRI	GGCC	3 cut(s)	29, 152, 182
BtgI	CCRYGG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	379
CaiI	CAGNNNCTG	1 cut(s)	46
CfoI	GCGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	2 cut(s)	118, 344
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	75, 144
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	121, 347
FaiI	YATR	4 cut(s)	119, 270, 345, 388
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	117, 343
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	8 cut(s)	44, 96, 239, 242, 245, 254, 257, 260
Fsp4HI	GCNGC	8 cut(s)	44, 96, 239, 242, 245, 254, 257, 260
FspBI	CTAG	2 cut(s)	102, 141
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	8 cut(s)	44, 96, 239, 242, 245, 254, 257, 260
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	29, 152, 182
HapII	CCGG	1 cut(s)	320
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	121, 347
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	1 cut(s)	309
Hpy188III	TCNNGA	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	2 cut(s)	36, 223
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 250, 253, 259
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	121, 347
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	6 cut(s)	66, 134, 161, 188, 333, 333
Lsp1109I	GCAGC	7 cut(s)	55, 107, 240, 250, 253, 268, 271
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	102, 141
MaeIII	GTNAC	6 cut(s)	15, 36, 62, 85, 223, 315
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	150
MluCI	AATT	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	4 cut(s)	19, 40, 172, 363
MseI	TTAA	1 cut(s)	359
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	3 cut(s)	46, 164, 253
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	4 cut(s)	244, 250, 253, 259
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	121, 347
NmuCI	GTSAC	3 cut(s)	15, 36, 315
PceI	AGGCCT	1 cut(s)	29
PkrI	GCNGC	8 cut(s)	45, 97, 240, 243, 246, 255, 258, 261
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	46
PvuII	CAGCTG	2 cut(s)	46, 164
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	8 cut(s)	44, 96, 239, 242, 245, 254, 257, 260
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	5 cut(s)	48, 142, 166, 264, 283
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	271
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	2 cut(s)	245, 251
SspMI	CTAG	2 cut(s)	102, 141
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	36, 223
TasI	AATT	1 cut(s)	271
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TseFI	GTSAC	3 cut(s)	15, 36, 315
TseI	GCWGC	7 cut(s)	43, 95, 238, 241, 253, 256, 259
Tsp45I	GTSAC	3 cut(s)	15, 36, 315
TspDTI	ATGAA	1 cut(s)	375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XspI	CTAG	2 cut(s)	102, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.