Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Forward (+)

5870357 .. 5872033

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G110500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGGACTAGCTGGTCACAAGATGAGGCCAATAACTCACAGTCGCAGCCAAGTGAACAACCAAGTAATAACAAGGCAGTGGAGAAAGCAACGGAAGCAAAGGCTGCTCCTAGTGGCTCTAAACCCATGGCAGTGGAGAAAACAGCTCCTGACCATCAGGCTAAGTTCTCAGCTAACAACAGCAACCATGAAATCACAGTTGTTAAAGAAGTTAAGGAAATGGAGAAAAAGACAGCAACACAACAAGTTAAACAGCAGCTTCCACACAACTATGAAGCTATTGTGAGACATGCTGACTCAACCATCAACAAATCCTCAGTGGAAAACCTCCTTGAACAGCTCCATGCTGGAATAACCTTAAACCAAAAGAGAAAGAGGTACTGGGTTGACAAGAAGTCCAACAACTGCTTTATGGTGTATGCAAGGGATCTCTTGATCACTTGGGCTGAAGACAATCGTTACTGGCTCTGGCCCTCCCTGCAAGAAACCAGTGGTGTCGTCATTGATGCTGCTGAACTGATTAATGTATGTTGGCTAGAAGTGCATGGAAAATTTGAGACTTCAAAGCTGTCACCAGGAACTCTGTACGAAGTTGTGTTTGTGGTCAAGCTGAAAGCTTCAGGTTATGGATGGGATGTTCCAGTGAATGTCAGACTCACTCTTCCAGATGATAGCATACAATGGCATAAAGTTAATCTGATGGAAATCCCAAGAGAGCAATGGATAGAGATTTCGGTTGGCGAGTTTAGAGCATCACCCGAAAAACCTGGGGACATGGAGTTTTCGATGTACGAATATGATGGTGGGAAATGGAAGAGAGGACTTGTTATCAAGGGTGTTACCATTCGGCCTAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

287

Amino Acids

32.49

Weight (kDa)

6.68

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AclWI	GGATC	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	2 cut(s)	468, 603
AfaI	GTAC	3 cut(s)	380, 587, 791
AgsI	TTSAA	2 cut(s)	335, 564
AhdI	GACNNNNNGTC	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	574, 766
AloI	GAACNNNNNNTCC	2 cut(s)	621, 653
AluBI	AGCT	9 cut(s)	12, 146, 173, 259, 278, 340, 568, 610, 617
AluI	AGCT	9 cut(s)	12, 146, 173, 259, 278, 340, 568, 610, 617
Alw26I	GTCTC	2 cut(s)	280, 551
AlwI	GGATC	1 cut(s)	435
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	27, 470, 848
ApeKI	GCWGC	4 cut(s)	46, 104, 256, 509
ApoI	RAATTY	1 cut(s)	551
AseI	ATTAAT	1 cut(s)	522
AspS9I	GGNCC	1 cut(s)	471
AsuHPI	GGTGA	2 cut(s)	564, 747
BbsI	GAAGAC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	58, 91, 268, 496
BccI	CCATC	5 cut(s)	162, 311, 624, 694, 794
BciT130I	CCWGG	2 cut(s)	576, 768
BclI	TGATCA	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	280, 551
BfaI	CTAG	3 cut(s)	9, 111, 536
BisI	GCNGC	4 cut(s)	47, 105, 257, 510
BlsI	GCNGC	4 cut(s)	48, 106, 258, 511
Bme1390I	CCNGG	2 cut(s)	576, 768
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	471
BmrFI	CCNGG	2 cut(s)	576, 768
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	496, 761
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	704
BsaJI	CCNNGG	2 cut(s)	126, 767
Bse1I	ACTGG	4 cut(s)	386, 467, 489, 641
Bse3DI	GCAATG	1 cut(s)	725
Bse8I	GATNNNNATC	1 cut(s)	704
BseBI	CCWGG	2 cut(s)	576, 768
BseDI	CCNNGG	2 cut(s)	126, 767
BseGI	GGATG	2 cut(s)	635, 640
BseJI	GATNNNNATC	1 cut(s)	704
BseMI	GCAATG	1 cut(s)	725
BseMII	CTCAG	2 cut(s)	183, 330
BseNI	ACTGG	4 cut(s)	386, 467, 489, 641
BseXI	GCAGC	4 cut(s)	58, 91, 268, 496
BshFI	GGCC	3 cut(s)	29, 472, 850
BslFI	GGGAC	2 cut(s)	19, 785
BsmAI	GTCTC	2 cut(s)	280, 551
BsmFI	GGGAC	2 cut(s)	19, 785
BsnI	GGCC	3 cut(s)	29, 472, 850
Bsp143I	GATC	2 cut(s)	427, 435
Bsp19I	CCATGG	1 cut(s)	126
BspANI	GGCC	3 cut(s)	29, 472, 850
BspCNI	CTCAG	2 cut(s)	182, 329
BspPI	GGATC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	725
BsrI	ACTGG	4 cut(s)	386, 467, 489, 641
BssECI	CCNNGG	2 cut(s)	126, 767
BssMI	GATC	2 cut(s)	427, 435
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	576, 768
Bst4CI	ACNGT	2 cut(s)	42, 199
Bst6I	CTCTTC	2 cut(s)	666, 809
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstDEI	CTNAG	3 cut(s)	162, 169, 316
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	635, 640
BstKTI	GATC	2 cut(s)	430, 438
BstMAI	GTCTC	2 cut(s)	280, 551
BstMBI	GATC	2 cut(s)	427, 435
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 104, 478, 541
BstNI	CCWGG	2 cut(s)	576, 768
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	574, 766
BstV1I	GCAGC	4 cut(s)	58, 91, 268, 496
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	3 cut(s)	29, 472, 850
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	635, 640
BtsI	GCAGTG	2 cut(s)	84, 138
BtsIMutI	CAGTG	5 cut(s)	84, 138, 324, 496, 648
CaiI	CAGNNNCTG	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	471
Csp6I	GTAC	3 cut(s)	379, 586, 790
CviAII	CATG	6 cut(s)	127, 188, 290, 344, 545, 775
CviQI	GTAC	3 cut(s)	379, 586, 790
DdeI	CTNAG	3 cut(s)	162, 169, 316
DpnI	GATC	2 cut(s)	429, 437
DpnII	GATC	2 cut(s)	427, 435
DrdI	GACNNNNNNGTC	1 cut(s)	13
DriI	GACNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	2 cut(s)	666, 809
Eam1105I	GACNNNNNGTC	1 cut(s)	394
EarI	CTCTTC	2 cut(s)	666, 809
Eco130I	CCWWGG	1 cut(s)	126
Eco57I	CTGAAG	2 cut(s)	468, 603
EcoRII	CCWGG	2 cut(s)	574, 766
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	6 cut(s)	130, 191, 293, 347, 548, 778
FaqI	GGGAC	2 cut(s)	19, 785
FatI	CATG	6 cut(s)	126, 187, 289, 343, 544, 774
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	4 cut(s)	47, 105, 257, 510
FokI	GGATG	2 cut(s)	642, 647
Fsp4HI	GCNGC	4 cut(s)	47, 105, 257, 510
FspBI	CTAG	3 cut(s)	9, 111, 536
GluI	GCNGC	4 cut(s)	47, 105, 257, 510
HaeIII	GGCC	3 cut(s)	29, 472, 850
Hin1II	CATG	6 cut(s)	130, 191, 293, 347, 548, 778
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	615
HinfI	GANTC	2 cut(s)	296, 654
HphI	GGTGA	2 cut(s)	564, 747
Hpy166II	GTNNAC	2 cut(s)	56, 388
Hpy188I	TCNGA	2 cut(s)	653, 699
Hpy188III	TCNNGA	3 cut(s)	149, 433, 665
Hpy8I	GTNNAC	2 cut(s)	56, 388
HpyCH4III	ACNGT	2 cut(s)	42, 199
HpyCH4V	TGCA	3 cut(s)	422, 481, 544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 104, 478, 541
HpyF3I	CTNAG	3 cut(s)	162, 169, 316
Hsp92II	CATG	6 cut(s)	130, 191, 293, 347, 548, 778
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	2 cut(s)	427, 435
LmnI	GCTCC	3 cut(s)	112, 151, 345
Lsp1109I	GCAGC	4 cut(s)	58, 91, 268, 496
LweI	GCATC	2 cut(s)	496, 761
MaeI	CTAG	3 cut(s)	9, 111, 536
MaeIII	GTNAC	4 cut(s)	15, 458, 570, 838
MalI	GATC	2 cut(s)	429, 437
MboI	GATC	2 cut(s)	427, 435
MboII	GAAGA	3 cut(s)	461, 653, 826
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	1 cut(s)	551
MlyI	GAGTC	2 cut(s)	290, 648
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	6 cut(s)	19, 325, 338, 369, 484, 812
MseI	TTAA	6 cut(s)	204, 213, 249, 359, 522, 693
MslI	CAYNNNNRTG	2 cut(s)	131, 270
MspR9I	CCNGG	2 cut(s)	576, 768
MvaI	CCWGG	2 cut(s)	576, 768
MwoI	GCNNNNNNNGC	4 cut(s)	95, 104, 478, 541
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	2 cut(s)	427, 435
NlaIII	CATG	6 cut(s)	130, 191, 293, 347, 548, 778
NmuCI	GTSAC	2 cut(s)	15, 570
NspI	RCATGY	1 cut(s)	293
PkrI	GCNGC	4 cut(s)	48, 106, 258, 511
PleI	GAGTC	2 cut(s)	290, 648
PpsI	GAGTC	2 cut(s)	290, 648
PshBI	ATTAAT	1 cut(s)	522
Psp6I	CCWGG	2 cut(s)	574, 766
PspGI	CCWGG	2 cut(s)	574, 766
PspPI	GGNCC	1 cut(s)	471
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	3 cut(s)	380, 587, 791
RsaNI	GTAC	3 cut(s)	379, 586, 790
RseI	CAYNNNNRTG	2 cut(s)	131, 270
SaqAI	TTAA	6 cut(s)	204, 213, 249, 359, 522, 693
SatI	GCNGC	4 cut(s)	47, 105, 257, 510
Sau3AI	GATC	2 cut(s)	427, 435
Sau96I	GGNCC	1 cut(s)	471
SchI	GAGTC	2 cut(s)	290, 648
ScrFI	CCNGG	2 cut(s)	576, 768
SfaNI	GCATC	2 cut(s)	496, 761
SmiMI	CAYNNNNRTG	2 cut(s)	131, 270
Sse9I	AATT	1 cut(s)	551
SspMI	CTAG	3 cut(s)	9, 111, 536
StyD4I	CCNGG	2 cut(s)	574, 766
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	42, 199
TaqI	TCGA	1 cut(s)	785
TasI	AATT	1 cut(s)	551
Tru1I	TTAA	6 cut(s)	204, 213, 249, 359, 522, 693
Tru9I	TTAA	6 cut(s)	204, 213, 249, 359, 522, 693
TscAI	CASTG	5 cut(s)	84, 138, 324, 496, 648
TseFI	GTSAC	2 cut(s)	15, 570
TseI	GCWGC	4 cut(s)	46, 104, 256, 509
Tsp45I	GTSAC	2 cut(s)	15, 570
TspDTI	ATGAA	2 cut(s)	204, 288
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	5 cut(s)	84, 138, 324, 496, 648
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	717
XspI	CTAG	3 cut(s)	9, 111, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.