Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Forward (+)

15039903 .. 15040991

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG145100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTGTATCCAAGGGATCTCACAATCACTTGGGCTGACGACAAACGTTACTGGCACTGGCCTTCCCTGGAAGAAACAAGTAATGTCTTCATCGATGTCGCTGAACTGTTAAGGGTATGCTGGCTTGAAGTTCATGGAAAAATTGATTCCACAAAGCTGTCACCAGGAACCCTATATGAAGTAGTATTTATAGTGATGTTGAAAGCTGCAGCTTATGGATGGAAAGTTCCTGTCAATGTCAGCCTCACTCTCCCAGATGGTAACAAGCAAGAGCGTAAAGCTGATCTGAATAAAATCCCAAGAGAACAATGGACAGAGATACCAGTAGGCGAGTTTAGAGCATCACCAGGATTACTTGGGAACATTGAAATTTCGATGTATCAATATGATGATGGCGGGATATGGAAGAGTGGACTTTTGATCAAGGGCGTTGCCGTTCGGCCTAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

150

Amino Acids

17.08

Weight (kDa)

6.12

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	1 - 148	8.9e-42	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	396
AclI	AACGTT	1 cut(s)	46
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	369
AgsI	TTSAA	3 cut(s)	128, 202, 368
AjnI	CCWGG	3 cut(s)	66, 163, 346
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
AluBI	AGCT	5 cut(s)	157, 206, 212, 281, 450
AluI	AGCT	5 cut(s)	157, 206, 212, 281, 450
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	2 cut(s)	59, 440
ApeKI	GCWGC	2 cut(s)	206, 209
ApoI	RAATTY	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	153, 336
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	193, 221
BccI	CCATC	3 cut(s)	213, 251, 386
BceAI	ACGGC	1 cut(s)	419
BciT130I	CCWGG	3 cut(s)	68, 165, 348
BciVI	GTATCC	1 cut(s)	18
BclI	TGATCA	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	2 cut(s)	207, 210
BlsI	GCNGC	2 cut(s)	208, 211
Bme1390I	CCNGG	3 cut(s)	68, 165, 348
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	3 cut(s)	68, 165, 348
BmsI	GCATC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	11, 66
Bse1I	ACTGG	3 cut(s)	56, 62, 323
BseBI	CCWGG	3 cut(s)	68, 165, 348
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	11, 66
BseGI	GGATG	1 cut(s)	224
BseNI	ACTGG	3 cut(s)	56, 62, 323
BseXI	GCAGC	2 cut(s)	193, 221
BshFI	GGCC	2 cut(s)	61, 442
BshVI	ATCGAT	1 cut(s)	93
BsnI	GGCC	2 cut(s)	61, 442
Bsp143I	GATC	3 cut(s)	16, 283, 420
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	2 cut(s)	61, 442
BspDI	ATCGAT	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	24
BsrI	ACTGG	3 cut(s)	56, 62, 323
BssECI	CCNNGG	2 cut(s)	11, 66
BssMI	GATC	3 cut(s)	16, 283, 420
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	3 cut(s)	68, 165, 348
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	224
BstKTI	GATC	3 cut(s)	19, 286, 423
BstMBI	GATC	3 cut(s)	16, 283, 420
BstNI	CCWGG	3 cut(s)	68, 165, 348
BstSCI	CCNGG	3 cut(s)	66, 163, 346
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	193, 221
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	61, 442
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	93
CviAII	CATG	1 cut(s)	134
DpnI	GATC	3 cut(s)	18, 285, 422
DpnII	GATC	3 cut(s)	16, 283, 420
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	11
EcoRII	CCWGG	3 cut(s)	66, 163, 346
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	1 cut(s)	137
FaiI	YATR	8 cut(s)	118, 135, 175, 177, 191, 216, 387, 403
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	207, 210
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	207, 210
GluI	GCNGC	2 cut(s)	207, 210
HaeIII	GGCC	2 cut(s)	61, 442
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	1 cut(s)	146
HphI	GGTGA	2 cut(s)	153, 336
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	1 cut(s)	288
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	16, 283, 420
Lsp1109I	GCAGC	2 cut(s)	193, 221
LweI	GCATC	1 cut(s)	350
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	3 cut(s)	47, 159, 260
MalI	GATC	3 cut(s)	18, 285, 422
MboI	GATC	3 cut(s)	16, 283, 420
MboII	GAAGA	3 cut(s)	79, 83, 418
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	2 cut(s)	141, 369
MnlI	CCTC	1 cut(s)	254
MseI	TTAA	1 cut(s)	110
MspR9I	CCNGG	3 cut(s)	68, 165, 348
MvaI	CCWGG	3 cut(s)	68, 165, 348
NdeII	GATC	3 cut(s)	16, 283, 420
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	208, 211
Psp1406I	AACGTT	1 cut(s)	46
Psp6I	CCWGG	3 cut(s)	66, 163, 346
PspGI	CCWGG	3 cut(s)	66, 163, 346
PspN4I	GGNNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	2 cut(s)	207, 210
Sau3AI	GATC	3 cut(s)	16, 283, 420
ScrFI	CCNGG	3 cut(s)	68, 165, 348
SetI	ASST	6 cut(s)	49, 159, 208, 214, 283, 452
SfaNI	GCATC	1 cut(s)	350
SfcI	CTRYAG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	141, 369
SsiI	CCGC	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	66, 163, 346
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	93, 374
TasI	AATT	2 cut(s)	141, 369
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	2 cut(s)	206, 209
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	3 cut(s)	79, 122, 192
TspRI	CASTG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.