Rh5DG144300

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001185
Physical Location & Seq
Forward (+)
14836164 .. 14837379
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG144300.1

Sequence Viewer

Length: 861 bp
ATGGGGACAGGGTGGTCACAAGATGAGGCCTCACAGTCACAGCAGCTGAGTCCTGAAGCAAGTAACAAGGCAGTAGTGGAGAAAGTAACAGAAGCAGCGCCTAGTGGCTCTAAACCCATGGCAAAAGTGGAGAAATCAGCTAGTTTTCAGGCCAAATCTTCAGCTGATCACAACCAGGAGGCCAAAGTAGTGAAAGAAGTCAAGGGAACAGAGAAACCGACAGTTACACAAGTGAAGCAGCAGCCGCAACCGCTGCAGCAGCTCCCACATAATTACAAAGCTATTGTGAAAGATGCCGACACTCCAATCAACAAGTCACCGGAACATCTGTTTGTACATCTCCATGCTGGAATACTCTTAAACCAAAAGAGGAAGAAGTATTGGGTTGACAAGGAGTCCAACAACTGCTTCATGGTGTATCCAAGGGATCTCACAATCACTTGGGCTGAAGACAATCGTTACTGGCACTGGCCTTCCCTGGAAGAAACAAGTAATGTCTTCATCGATGCAGCTGAACTGTTAAATGTATGCTGGCTTGAAGTTCATGGAAAAATTGATTCCACAAAGCTGTCACCAGGAACTCTATATGAAGTAGTATTTATAGTGATGTTGAAAGCTGCAGCTTATGGATGGAAAGTTCCTGTCAATGTCAGACTCAGTCTCCCAGATGGTAACAAGCAAGAACGTAAAGCTGATCTGAATAAAATCCCTAGAGAACAATGGACAGAGATACCAGTAGGCGAGTTTAGAGCATCAACAGGATTACTTGGGAACATTGAATTTTCGATGTATGAATATGAAGATGGGAAATGGAAGAGTGGACTTCTGATCAAGGGCGTTGCCGTTCGGCCTAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

286

Amino Acids

32.23

Weight (kDa)

8.31

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 135 - 284 5.9e-45 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AciI CCGC 2 cut(s) 245, 251
AclWI GGATC 1 cut(s) 435
AcsI RAATTY 1 cut(s) 779
AcuI CTGAAG 3 cut(s) 75, 144, 468
AfaI GTAC 1 cut(s) 336
AgsI TTSAA 3 cut(s) 539, 613, 779
AhdI GACNNNNNGTC 1 cut(s) 394
AjnI CCWGG 3 cut(s) 174, 477, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AloI GAACNNNNNNTCC 2 cut(s) 621, 653
Alw26I GTCTC 1 cut(s) 665
AlwI GGATC 1 cut(s) 435
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 5 cut(s) 27, 150, 180, 470, 848
ApoI RAATTY 1 cut(s) 779
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 309, 564
BbsI GAAGAC 2 cut(s) 456, 490
BccI CCATC 3 cut(s) 624, 662, 797
BceAI ACGGC 1 cut(s) 827
BciT130I CCWGG 3 cut(s) 176, 479, 576
BciVI GTATCC 1 cut(s) 429
BclI TGATCA 2 cut(s) 166, 828
BcoDI GTCTC 1 cut(s) 665
BfaI CTAG 3 cut(s) 102, 141, 711
BfmI CTRYAG 2 cut(s) 254, 618
BfoI RGCGCY 1 cut(s) 101
BfuI GTATCC 1 cut(s) 429
Bme1390I CCNGG 3 cut(s) 176, 479, 576
BmeRI GACNNNNNGTC 1 cut(s) 394
BmrFI CCNGG 3 cut(s) 176, 479, 576
BmsI GCATC 3 cut(s) 283, 496, 761
BpiI GAAGAC 2 cut(s) 456, 490
Bsa29I ATCGAT 1 cut(s) 504
BsaJI CCNNGG 3 cut(s) 117, 422, 477
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bse1I ACTGG 3 cut(s) 467, 473, 734
BseBI CCWGG 3 cut(s) 176, 479, 576
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 3 cut(s) 117, 422, 477
BseGI GGATG 1 cut(s) 635
BseMII CTCAG 2 cut(s) 38, 670
BseNI ACTGG 3 cut(s) 467, 473, 734
BshFI GGCC 5 cut(s) 29, 152, 182, 472, 850
BshVI ATCGAT 1 cut(s) 504
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 665
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 5 cut(s) 29, 152, 182, 472, 850
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 4 cut(s) 166, 427, 694, 828
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 2 cut(s) 245, 251
BspANI GGCC 5 cut(s) 29, 152, 182, 472, 850
BspCNI CTCAG 2 cut(s) 39, 669
BspDI ATCGAT 1 cut(s) 504
BspMAI CTGCAG 2 cut(s) 258, 622
BspPI GGATC 1 cut(s) 435
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 3 cut(s) 467, 473, 734
BssECI CCNNGG 3 cut(s) 117, 422, 477
BssMI GATC 4 cut(s) 166, 427, 694, 828
BssT1I CCWWGG 2 cut(s) 117, 422
Bst2UI CCWGG 3 cut(s) 176, 479, 576
Bst4CI ACNGT 3 cut(s) 36, 223, 519
Bst6I CTCTTC 1 cut(s) 809
BstAPI GCANNNNNTGC 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 2 cut(s) 47, 656
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 635
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 4 cut(s) 169, 430, 697, 831
BstMAI GTCTC 1 cut(s) 665
BstMBI GATC 4 cut(s) 166, 427, 694, 828
BstMWI GCNNNNNNNGC 4 cut(s) 244, 250, 253, 259
BstNI CCWGG 3 cut(s) 176, 479, 576
BstSCI CCNGG 3 cut(s) 174, 477, 574
BstSFI CTRYAG 2 cut(s) 254, 618
BstV2I GAAGAC 2 cut(s) 456, 490
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 504
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 5 cut(s) 29, 152, 182, 472, 850
BsuTUI ATCGAT 1 cut(s) 504
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 635
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 533
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 1 cut(s) 335
CviAII CATG 4 cut(s) 118, 344, 412, 545
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 2 cut(s) 47, 656
DpnI GATC 4 cut(s) 168, 429, 696, 830
DpnII GATC 4 cut(s) 166, 427, 694, 828
DrdI GACNNNNNNGTC 1 cut(s) 13
DriI GACNNNNNGTC 1 cut(s) 394
DseDI GACNNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 809
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 809
Eco130I CCWWGG 2 cut(s) 117, 422
Eco147I AGGCCT 1 cut(s) 29
Eco57I CTGAAG 3 cut(s) 75, 144, 468
EcoRII CCWGG 3 cut(s) 174, 477, 574
EcoT14I CCWWGG 2 cut(s) 117, 422
ErhI CCWWGG 2 cut(s) 117, 422
FaeI CATG 4 cut(s) 121, 347, 415, 548
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 117, 343, 411, 544
FbaI TGATCA 2 cut(s) 166, 828
FokI GGATG 1 cut(s) 642
FspBI CTAG 3 cut(s) 102, 141, 711
GlaI GCGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 5 cut(s) 29, 152, 182, 472, 850
HapII CCGG 1 cut(s) 320
HhaI GCGC 1 cut(s) 100
Hin1II CATG 4 cut(s) 121, 347, 415, 548
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 4 cut(s) 49, 395, 557, 654
HpaII CCGG 1 cut(s) 320
HphI GGTGA 2 cut(s) 309, 564
Hpy166II GTNNAC 2 cut(s) 388, 821
Hpy188I TCNGA 3 cut(s) 653, 699, 828
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 2 cut(s) 388, 821
HpyAV CCTTC 1 cut(s) 483
HpyCH4III ACNGT 3 cut(s) 36, 223, 519
HpyCH4IV ACGT 1 cut(s) 685
HpyCH4V TGCA 3 cut(s) 256, 509, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 244, 250, 253, 259
HpyF3I CTNAG 2 cut(s) 47, 656
HpySE526I ACGT 1 cut(s) 685
Hsp92II CATG 4 cut(s) 121, 347, 415, 548
HspAI GCGC 1 cut(s) 98
Ksp22I TGATCA 2 cut(s) 166, 828
Kzo9I GATC 4 cut(s) 166, 427, 694, 828
LmnI GCTCC 1 cut(s) 267
LweI GCATC 3 cut(s) 283, 496, 761
MaeI CTAG 3 cut(s) 102, 141, 711
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 9 cut(s) 15, 36, 62, 85, 223, 315, 458, 570, 671
MalI GATC 4 cut(s) 168, 429, 696, 830
MboI GATC 4 cut(s) 166, 427, 694, 828
MboII GAAGA 7 cut(s) 150, 385, 461, 490, 494, 812, 826
MflI RGATCY 1 cut(s) 427
MluCI AATT 3 cut(s) 271, 552, 779
MlyI GAGTC 3 cut(s) 58, 404, 648
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 4 cut(s) 19, 40, 172, 363
MseI TTAA 2 cut(s) 359, 521
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 4 cut(s) 46, 164, 253, 512
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 3 cut(s) 176, 479, 576
MvaI CCWGG 3 cut(s) 176, 479, 576
MwoI GCNNNNNNNGC 4 cut(s) 244, 250, 253, 259
NcoI CCATGG 1 cut(s) 117
NdeII GATC 4 cut(s) 166, 427, 694, 828
NlaIII CATG 4 cut(s) 121, 347, 415, 548
NmuCI GTSAC 4 cut(s) 15, 36, 315, 570
PceI AGGCCT 1 cut(s) 29
PfeI GAWTC 1 cut(s) 557
PflFI GACNNNGTC 1 cut(s) 657
PleI GAGTC 3 cut(s) 57, 403, 648
PpsI GAGTC 3 cut(s) 57, 403, 648
Psp6I CCWGG 3 cut(s) 174, 477, 574
PspGI CCWGG 3 cut(s) 174, 477, 574
PstI CTGCAG 2 cut(s) 258, 622
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 427
PsyI GACNNNGTC 1 cut(s) 657
PvuII CAGCTG 3 cut(s) 46, 164, 512
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 2 cut(s) 359, 521
Sau3AI GATC 4 cut(s) 166, 427, 694, 828
SchI GAGTC 3 cut(s) 58, 404, 648
ScrFI CCNGG 3 cut(s) 176, 479, 576
SfaNI GCATC 3 cut(s) 283, 496, 761
SfcI CTRYAG 2 cut(s) 254, 618
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 3 cut(s) 271, 552, 779
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 2 cut(s) 245, 251
SspMI CTAG 3 cut(s) 102, 141, 711
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 174, 477, 574
StyI CCWWGG 2 cut(s) 117, 422
TaaI ACNGT 3 cut(s) 36, 223, 519
TaiI ACGT 1 cut(s) 688
TaqI TCGA 2 cut(s) 504, 785
TasI AATT 3 cut(s) 271, 552, 779
TatI WGTACW 1 cut(s) 334
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 2 cut(s) 359, 521
Tru9I TTAA 2 cut(s) 359, 521
TscAI CASTG 1 cut(s) 473
TseFI GTSAC 4 cut(s) 15, 36, 315, 570
Tsp45I GTSAC 4 cut(s) 15, 36, 315, 570
TspDTI ATGAA 6 cut(s) 400, 490, 533, 603, 807, 813
TspRI CASTG 1 cut(s) 473
Tth111I GACNNNGTC 1 cut(s) 657
XapI RAATTY 1 cut(s) 779
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XspI CTAG 3 cut(s) 102, 141, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.