Rh1AG164200

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001185
Physical Location & Seq
Reverse (-)
31437881 .. 31439291
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG164200.1

Sequence Viewer

Length: 468 bp
ATGGTGTATCCAAAGGCTCTCACAATCACTTGGGCTGATTCGGCTAAAGACACTTGTTACTGGCGCTGGACTTCCGTGGAAGACAGTAGTGGCATCATCGATGCAGCTGAACTGCTAAATGTATGCTGGCTTGATGTTCAAGGAAAAGTTGATTCCACAAAGCTGTCATCAGGAACTCTATATGAAGTAGTATTTATAGTGAGGTTGAAACAAGCAGCTGATGGATGGGAAATTCCTGTCAATTTCAGACTCACTCTCCCAGATGGTAGCAAGTCAGAACGTAAAGCTGATGATCTGAATAAAATCCCAAGAGACGAATGGAGAGAGATACCTGCAGGCGAGTTTACAGCATCACCAGGATTGCTTGGGAACATTGAATTTTCGATGTATGAACATGAAAGTGAGCAATGGAAGAGTGGACTCCTAATCAAGGGCGTTGTCATTCAGCCTAAAAACAAAGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

155

Amino Acids

17.49

Weight (kDa)

4.81

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 1 - 150 2.6e-37 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 340
AcsI RAATTY 2 cut(s) 231, 377
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 3 cut(s) 140, 208, 377
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 4 cut(s) 107, 163, 218, 287
AluI AGCT 4 cut(s) 107, 163, 218, 287
Alw26I GTCTC 1 cut(s) 306
ApeKI GCWGC 2 cut(s) 104, 215
ApoI RAATTY 2 cut(s) 231, 377
AspLEI GCGC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 116, 227
BccI CCATC 3 cut(s) 215, 219, 257
BciT130I CCWGG 1 cut(s) 357
BciVI GTATCC 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 466
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 340
BfuI GTATCC 1 cut(s) 18
BisI GCNGC 2 cut(s) 105, 216
BlsI GCNGC 2 cut(s) 106, 217
Bme1390I CCNGG 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 3 cut(s) 91, 102, 359
BpiI GAAGAC 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 357
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMI GCAATG 1 cut(s) 413
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 116, 227
BshVI ATCGAT 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 306
BsmBI CGTCTC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 292
BspDI ATCGAT 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 337
BspMI ACCTGC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 413
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 128, 337
BstDSI CCRYGG 1 cut(s) 75
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 116, 227
BstV2I GAAGAC 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 99
BsuI GTATCC 1 cut(s) 18
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 230
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 128, 337
CfoI GCGC 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 99
CviAII CATG 1 cut(s) 395
CviJI RGCY 9 cut(s) 17, 35, 44, 107, 130, 163, 218, 287, 448
CviKI_1 RGCY 9 cut(s) 17, 35, 44, 107, 130, 163, 218, 287, 448
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 1 cut(s) 398
FaiI YATR 6 cut(s) 124, 181, 183, 197, 390, 396
FatI CATG 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 105, 216
FokI GGATG 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 105, 216
FspBI CTAG 1 cut(s) 466
GlaI GCGC 1 cut(s) 65
GluI GCNGC 2 cut(s) 105, 216
HaeII RGCGCY 1 cut(s) 67
HhaI GCGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 398
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 4 cut(s) 38, 152, 249, 420
HphI GGTGA 1 cut(s) 345
Hpy166II GTNNAC 2 cut(s) 345, 419
Hpy188I TCNGA 3 cut(s) 248, 277, 297
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 2 cut(s) 345, 419
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 104, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 1 cut(s) 398
HspAI GCGC 1 cut(s) 64
Kzo9I GATC 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 116, 227
LweI GCATC 3 cut(s) 91, 102, 359
MaeI CTAG 1 cut(s) 466
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 92, 424
MluCI AATT 3 cut(s) 231, 241, 377
MlyI GAGTC 2 cut(s) 243, 414
MnlI CCTC 2 cut(s) 195, 454
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 2 cut(s) 107, 218
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 292
NlaIII CATG 1 cut(s) 398
PfeI GAWTC 2 cut(s) 38, 152
PkrI GCNGC 2 cut(s) 106, 217
PleI GAGTC 2 cut(s) 243, 414
PpsI GAGTC 2 cut(s) 243, 414
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PstI CTGCAG 1 cut(s) 337
PvuII CAGCTG 2 cut(s) 107, 218
RseI CAYNNNNRTG 1 cut(s) 399
SatI GCNGC 2 cut(s) 105, 216
Sau3AI GATC 1 cut(s) 292
SbfI CCTGCAGG 1 cut(s) 337
SchI GAGTC 2 cut(s) 243, 414
ScrFI CCNGG 1 cut(s) 357
SdaI CCTGCAGG 1 cut(s) 337
SetI ASST 7 cut(s) 109, 165, 206, 220, 283, 289, 334
SfaNI GCATC 3 cut(s) 91, 102, 359
SfcI CTRYAG 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse8387I CCTGCAGG 1 cut(s) 337
Sse9I AATT 3 cut(s) 231, 241, 377
SspMI CTAG 1 cut(s) 466
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 99, 383
TasI AATT 3 cut(s) 231, 241, 377
TfiI GAWTC 2 cut(s) 38, 152
TseI GCWGC 2 cut(s) 104, 215
TspDTI ATGAA 3 cut(s) 198, 405, 411
TspGWI ACGGA 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 2 cut(s) 231, 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XspI CTAG 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.