Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

5617578 .. 5619020

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G107600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGCCCAGAGACCCCACCGCGGCCTCCTTCCCCACCACCGCGGCCTCCTTCCCCACCACCGCGGCCTCCTCCCCCACCACCGCCGCCTCCTCCACCGCCTCCGCCTCCTGCCCCACCACCTCCGCCTCCTCCCCCACCGCTGCTTCCACCCAACTATGAAGCTATTTTGAGAGATGCTGACTCACCCATCAACAAATCCTCAGTGGAAAACCTCCATGAACAGCTCCGTGCTGGAATAACCTTAAACCAAAAGAGAAAGAAGTATTGGGTTGACAAGAAGTCCAACAACTGCTTTATGGTGTATGCAAGGGATCTCTCGATCTCTTGGGCTGAAGACGATCGTAACTGGCTCTGGCCCTCCCTGCAAGAAACCAGTGGTGTCGTCATTGATGCTGCTGAAATGATTAATGAATGTTGGCTAGAAGTGCATGGACAATTTGAGACTACAAAGCTGTCACCAGGAACTCTGTATGAAGTTGCGTTTGTGGTCAAGCTGAAAGCTTCAGCTGATGGATGGGATGTTCCAGTGAATGTCAGTCTCACTCTTCCAGATGGTAGCAAACAATGGCATGAAGTTAAGTTGAAGGAAATCCCAAGAGAGGAATGGATAGAGATTTCGGTTGGTGAGTTTAGAGCATCACCGGAAATACCTGGTGACATGGAGTTTTCGATGTATGAATATGATAGTGGGAAATGGAATAGAGGACTTGTTATCAAGGGTGTTATCATTCGGCCTAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

249

Amino Acids

27.79

Weight (kDa)

5.38

Isoelectric Point (pI)

67.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	22, 43, 64
AclWI	GGATC	1 cut(s)	321
AcuI	CTGAAG	2 cut(s)	354, 489
AfiI	CCNNNNNNNGG	2 cut(s)	21, 601
AgsI	TTSAA	1 cut(s)	586
AhdI	GACNNNNNGTC	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	460, 652
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	6 cut(s)	164, 226, 454, 496, 503, 509
AluI	AGCT	6 cut(s)	164, 226, 454, 496, 503, 509
Alw26I	GTCTC	3 cut(s)	5, 437, 545
AlwI	GGATC	1 cut(s)	321
AoxI	GGCC	6 cut(s)	4, 23, 44, 65, 356, 734
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	142, 395
AseI	ATTAAT	1 cut(s)	408
AspS9I	GGNCC	3 cut(s)	4, 5, 357
AsuHPI	GGTGA	5 cut(s)	177, 450, 633, 638, 668
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	129, 382
BccI	CCATC	4 cut(s)	197, 506, 510, 548
BciT130I	CCWGG	2 cut(s)	462, 654
BcoDI	GTCTC	3 cut(s)	5, 437, 545
BfaI	CTAG	1 cut(s)	422
BisI	GCNGC	6 cut(s)	23, 44, 65, 86, 143, 396
BlsI	GCNGC	6 cut(s)	24, 45, 66, 87, 144, 397
Bme1390I	CCNGG	2 cut(s)	462, 654
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmgT120I	GGNCC	3 cut(s)	4, 5, 357
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	462, 654
BmsI	GCATC	3 cut(s)	166, 382, 647
BpiI	GAAGAC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	20, 41, 62
BsaWI	WCCGGW	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 601
Bse1I	ACTGG	3 cut(s)	353, 375, 527
BseBI	CCWGG	2 cut(s)	462, 654
BseDI	CCNNGG	3 cut(s)	20, 41, 62
BseGI	GGATG	2 cut(s)	521, 526
BseLI	CCNNNNNNNGG	2 cut(s)	21, 601
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	3 cut(s)	353, 375, 527
BseRI	GAGGAG	3 cut(s)	60, 81, 120
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	129, 382
Bsh1236I	CGCG	3 cut(s)	22, 43, 64
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	6 cut(s)	6, 25, 46, 67, 358, 736
BsiEI	CGRYCG	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	644
BslI	CCNNNNNNNGG	2 cut(s)	21, 601
BsmAI	GTCTC	3 cut(s)	5, 437, 545
BsnI	GGCC	6 cut(s)	6, 25, 46, 67, 358, 736
Bso31I	GGTCTC	1 cut(s)	5
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	313, 321, 340
BspANI	GGCC	6 cut(s)	6, 25, 46, 67, 358, 736
BspCNI	CTCAG	1 cut(s)	215
BspFNI	CGCG	3 cut(s)	22, 43, 64
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	5
BsrI	ACTGG	3 cut(s)	353, 375, 527
BssECI	CCNNGG	3 cut(s)	20, 41, 62
BssMI	GATC	3 cut(s)	313, 321, 340
Bst2UI	CCWGG	2 cut(s)	462, 654
Bst6I	CTCTTC	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	202
BstDSI	CCRYGG	3 cut(s)	20, 41, 62
BstF5I	GGATG	2 cut(s)	521, 526
BstFNI	CGCG	3 cut(s)	22, 43, 64
BstKTI	GATC	3 cut(s)	316, 324, 343
BstMAI	GTCTC	3 cut(s)	5, 437, 545
BstMBI	GATC	3 cut(s)	313, 321, 340
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 427
BstNI	CCWGG	2 cut(s)	462, 654
BstSCI	CCNGG	2 cut(s)	460, 652
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	3 cut(s)	22, 43, 64
BstV1I	GCAGC	2 cut(s)	129, 382
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	6 cut(s)	6, 25, 46, 67, 358, 736
BtgI	CCRYGG	3 cut(s)	20, 41, 62
BtsCI	GGATG	2 cut(s)	521, 526
BtsIMutI	CAGTG	3 cut(s)	210, 382, 534
Cfr13I	GGNCC	3 cut(s)	4, 5, 357
Cfr42I	CCGCGG	3 cut(s)	23, 44, 65
CsiI	ACCWGGT	1 cut(s)	652
CviAII	CATG	4 cut(s)	218, 431, 572, 661
DdeI	CTNAG	1 cut(s)	202
DpnI	GATC	3 cut(s)	315, 323, 342
DpnII	GATC	3 cut(s)	313, 321, 340
DriI	GACNNNNNGTC	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	552
Eam1105I	GACNNNNNGTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	2 cut(s)	93, 114
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	5
Eco57I	CTGAAG	2 cut(s)	354, 489
EcoRII	CCWGG	2 cut(s)	460, 652
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	4 cut(s)	221, 434, 575, 664
FatI	CATG	4 cut(s)	217, 430, 571, 660
Fnu4HI	GCNGC	6 cut(s)	23, 44, 65, 86, 143, 396
FokI	GGATG	2 cut(s)	528, 533
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	6 cut(s)	23, 44, 65, 86, 143, 396
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	6 cut(s)	23, 44, 65, 86, 143, 396
HaeIII	GGCC	6 cut(s)	6, 25, 46, 67, 358, 736
HapII	CCGG	1 cut(s)	644
Hin1II	CATG	4 cut(s)	221, 434, 575, 664
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	5 cut(s)	177, 450, 633, 638, 668
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	319, 551
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	3 cut(s)	39, 60, 580
HpyCH4V	TGCA	3 cut(s)	308, 367, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 427
HpyF3I	CTNAG	1 cut(s)	202
Hsp92II	CATG	4 cut(s)	221, 434, 575, 664
KspI	CCGCGG	3 cut(s)	23, 44, 65
Kzo9I	GATC	3 cut(s)	313, 321, 340
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	2 cut(s)	129, 382
LweI	GCATC	3 cut(s)	166, 382, 647
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	3 cut(s)	344, 456, 656
MalI	GATC	3 cut(s)	315, 323, 342
MboI	GATC	3 cut(s)	313, 321, 340
MboII	GAAGA	2 cut(s)	347, 539
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	437, 742
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	309
MseI	TTAA	4 cut(s)	245, 408, 579, 745
MspA1I	CMGCKG	5 cut(s)	22, 43, 64, 142, 509
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	462, 654
MvaI	CCWGG	2 cut(s)	462, 654
MvnI	CGCG	3 cut(s)	22, 43, 64
MwoI	GCNNNNNNNGC	2 cut(s)	364, 427
NdeII	GATC	3 cut(s)	313, 321, 340
NlaIII	CATG	4 cut(s)	221, 434, 575, 664
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	456, 656
PkrI	GCNGC	6 cut(s)	24, 45, 66, 87, 144, 397
Ple19I	CGATCG	1 cut(s)	343
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PshBI	ATTAAT	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	460, 652
PspGI	CCWGG	2 cut(s)	460, 652
PspN4I	GGNNCC	1 cut(s)	6
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	3 cut(s)	4, 5, 357
PsuI	RGATCY	1 cut(s)	313
PvuI	CGATCG	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	509
SacII	CCGCGG	3 cut(s)	23, 44, 65
SaqAI	TTAA	4 cut(s)	245, 408, 579, 745
SatI	GCNGC	6 cut(s)	23, 44, 65, 86, 143, 396
Sau3AI	GATC	3 cut(s)	313, 321, 340
Sau96I	GGNCC	3 cut(s)	4, 5, 357
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	462, 654
SduI	GDGCHC	1 cut(s)	8
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	3 cut(s)	166, 382, 647
Sfr303I	CCGCGG	3 cut(s)	23, 44, 65
SgrBI	CCGCGG	3 cut(s)	23, 44, 65
Sse9I	AATT	2 cut(s)	437, 742
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	460, 652
TaqI	TCGA	2 cut(s)	320, 671
TasI	AATT	2 cut(s)	437, 742
TauI	GCSGC	4 cut(s)	25, 46, 67, 88
Tru1I	TTAA	4 cut(s)	245, 408, 579, 745
Tru9I	TTAA	4 cut(s)	245, 408, 579, 745
TscAI	CASTG	3 cut(s)	210, 382, 534
TseFI	GTSAC	2 cut(s)	456, 656
TseI	GCWGC	2 cut(s)	142, 395
Tsp45I	GTSAC	2 cut(s)	456, 656
TspDTI	ATGAA	6 cut(s)	174, 234, 426, 489, 588, 693
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	3 cut(s)	210, 382, 534
VspI	ATTAAT	1 cut(s)	408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	603
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.