Rorug03G0095100

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001185
Physical Location & Seq
Reverse (-)
7424038 .. 7425737
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0095100.1

Sequence Viewer

Length: 711 bp
ATGAAGTCTGCTTGTAGGAAAGCTGTGTTGTTTTCACTGCTCTGCGTGGTTCTATTTGGGTATGCTACAGCCGAGTCTGAAGAAGAGGTTTCACGGAAGTTGATATCTGCTCCGCACAAGAATGTGAGAACTAATGTTATTGATGGCACTGGTAATGAGAATACCTTAGGTTTTGAGGATATAAATAACGGGATCGGTGAGACAAAGGGCGGGAACAGCAAAGTCTCAATCTCCACTGTTGCATTATTTACGCTGGCAATGGCTGCTGCCACTGGTTTAGGTGCAGTGCCATTCTTCTTTGTGGAGCTTGATCCACAATGGGCTGGACTCTGCAATGGAATGGCTGCTGGTGTAATGTTGGCTGCAAGCTTTGATCTTATACAGGAAGGGCAAGGTCATGGAGCAGGGAATTGGGTGGTCTTTGGGATTCTAGCTGGGGGAATTTTTATTTTGCTTTGCAAGAAGTTTCTCGAACAATATGGAGAGGTTAGTATGTTGGACATTAAAGGTGCAGATGCAACTAAAGTAGTTCTTGTGATTGGAATAATGACTCTTCATTCATTTGGGGAGGGCTCTGGTGTTGGGGTTTCCTTTGCTGGTTCAAAGGGTTTCTCTCAGGGCCTTTTGAGCCAGGTTCGATTGGGATGGGAAATCCGTGCCGGCGACCTAGTTGTTCAAGAAATTCATATTCTCAGTCTCTATTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

236

Amino Acids

24.75

Weight (kDa)

5.37

Isoelectric Point (pI)

21.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 113, 210
AclWI GGATC 2 cut(s) 200, 305
AcsI RAATTY 2 cut(s) 441, 681
AcuI CTGAAG 1 cut(s) 99
AgsI TTSAA 2 cut(s) 603, 677
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 4 cut(s) 23, 307, 369, 434
AluI AGCT 4 cut(s) 23, 307, 369, 434
Alw26I GTCTC 3 cut(s) 194, 229, 701
AlwI GGATC 2 cut(s) 200, 305
AoxI GGCC 1 cut(s) 619
ApeKI GCWGC 4 cut(s) 263, 266, 344, 362
ApoI RAATTY 2 cut(s) 441, 681
AspS9I GGNCC 1 cut(s) 619
AsuHPI GGTGA 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 166
BanII GRGCYC 1 cut(s) 575
BbvI GCAGC 4 cut(s) 250, 253, 331, 349
BccI CCATC 2 cut(s) 137, 639
BciT130I CCWGG 1 cut(s) 632
BcoDI GTCTC 3 cut(s) 194, 229, 701
BfaI CTAG 2 cut(s) 431, 668
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 4 cut(s) 264, 267, 345, 363
BlsI GCNGC 4 cut(s) 265, 268, 346, 364
Bme1390I CCNGG 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 619
BmrFI CCNGG 1 cut(s) 632
BmsI GCATC 1 cut(s) 505
Bse118I RCCGGY 1 cut(s) 659
Bse1I ACTGG 2 cut(s) 154, 277
Bse21I CCTNAGG 1 cut(s) 166
Bse3DI GCAATG 2 cut(s) 264, 340
BseBI CCWGG 1 cut(s) 632
BseGI GGATG 1 cut(s) 650
BseMI GCAATG 2 cut(s) 264, 340
BseMII CTCAG 2 cut(s) 629, 706
BseNI ACTGG 2 cut(s) 154, 277
BseXI GCAGC 4 cut(s) 250, 253, 331, 349
BseYI CCCAGC 1 cut(s) 434
BsgI GTGCAG 2 cut(s) 303, 531
BshFI GGCC 1 cut(s) 621
BsiSI CCGG 1 cut(s) 660
BsmAI GTCTC 3 cut(s) 194, 229, 701
BsnI GGCC 1 cut(s) 621
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 3 cut(s) 192, 310, 373
BspACI CCGC 2 cut(s) 113, 210
BspANI GGCC 1 cut(s) 621
BspCNI CTCAG 2 cut(s) 628, 705
BspPI GGATC 2 cut(s) 200, 305
BsrDI GCAATG 2 cut(s) 264, 340
BsrFI RCCGGY 1 cut(s) 659
BsrI ACTGG 2 cut(s) 154, 277
BssAI RCCGGY 1 cut(s) 659
BssMI GATC 3 cut(s) 192, 310, 373
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 2 cut(s) 78, 558
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 255, 367, 661
BstDEI CTNAG 3 cut(s) 166, 615, 692
BstF5I GGATG 1 cut(s) 650
BstKTI GATC 3 cut(s) 195, 313, 376
BstMAI GTCTC 3 cut(s) 194, 229, 701
BstMBI GATC 3 cut(s) 192, 310, 373
BstMWI GCNNNNNNNGC 3 cut(s) 216, 263, 627
BstNI CCWGG 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 630
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 250, 253, 331, 349
Bsu36I CCTNAGG 1 cut(s) 166
BsuRI GGCC 1 cut(s) 621
BtsCI GGATG 1 cut(s) 650
BtsI GCAGTG 2 cut(s) 35, 291
BtsIMutI CAGTG 5 cut(s) 35, 147, 234, 270, 291
Cac8I GCNNGC 3 cut(s) 255, 367, 661
Cfr10I RCCGGY 1 cut(s) 659
Cfr13I GGNCC 1 cut(s) 619
CviAII CATG 1 cut(s) 398
DdeI CTNAG 3 cut(s) 166, 615, 692
DpnI GATC 3 cut(s) 194, 312, 375
DpnII GATC 3 cut(s) 192, 310, 373
Eam1104I CTCTTC 2 cut(s) 78, 558
EarI CTCTTC 2 cut(s) 78, 558
Eco24I GRGCYC 1 cut(s) 575
Eco32I GATATC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 1 cut(s) 630
EcoRV GATATC 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 575
FaeI CATG 1 cut(s) 401
FaiI YATR 7 cut(s) 63, 182, 380, 399, 480, 494, 687
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FatI CATG 1 cut(s) 397
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 4 cut(s) 264, 267, 345, 363
FokI GGATG 1 cut(s) 657
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 4 cut(s) 264, 267, 345, 363
FspBI CTAG 2 cut(s) 431, 668
GluI GCNGC 4 cut(s) 264, 267, 345, 363
GsaI CCCAGC 1 cut(s) 438
HaeIII GGCC 1 cut(s) 621
HapII CCGG 1 cut(s) 660
Hin1II CATG 1 cut(s) 401
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 4 cut(s) 74, 327, 427, 550
HpaII CCGG 1 cut(s) 660
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 470, 677
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 7 cut(s) 242, 284, 333, 365, 459, 512, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 263, 627
HpyF3I CTNAG 3 cut(s) 166, 615, 692
Hsp92II CATG 1 cut(s) 401
KroI GCCGGC 1 cut(s) 659
KroNI GCCGGC 1 cut(s) 661
Kzo9I GATC 3 cut(s) 192, 310, 373
LmnI GCTCC 3 cut(s) 115, 304, 401
Lsp1109I GCAGC 4 cut(s) 250, 253, 331, 349
LweI GCATC 1 cut(s) 505
MaeI CTAG 2 cut(s) 431, 668
MalI GATC 3 cut(s) 194, 312, 375
MboI GATC 3 cut(s) 192, 310, 373
MboII GAAGA 4 cut(s) 92, 95, 286, 545
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 3 cut(s) 409, 441, 681
MlyI GAGTC 3 cut(s) 83, 321, 544
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 4 cut(s) 79, 169, 478, 562
MroNI GCCGGC 1 cut(s) 659
MseI TTAA 2 cut(s) 504, 709
MslI CAYNNNNRTG 1 cut(s) 120
MspI CCGG 1 cut(s) 660
MspR9I CCNGG 1 cut(s) 632
MvaI CCWGG 1 cut(s) 632
MwoI GCNNNNNNNGC 3 cut(s) 216, 263, 627
NaeI GCCGGC 1 cut(s) 661
NdeII GATC 3 cut(s) 192, 310, 373
NgoMIV GCCGGC 1 cut(s) 659
NlaIII CATG 1 cut(s) 401
NmeAIII GCCGAG 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 661
PfeI GAWTC 1 cut(s) 427
PkrI GCNGC 4 cut(s) 265, 268, 346, 364
PleI GAGTC 3 cut(s) 82, 321, 544
PpsI GAGTC 3 cut(s) 82, 321, 544
Psp6I CCWGG 1 cut(s) 630
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 1 cut(s) 630
PspPI GGNCC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 2 cut(s) 504, 709
SatI GCNGC 4 cut(s) 264, 267, 345, 363
Sau3AI GATC 3 cut(s) 192, 310, 373
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 3 cut(s) 83, 321, 544
ScrFI CCNGG 1 cut(s) 632
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 1 cut(s) 505
SfcI CTRYAG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 3 cut(s) 409, 441, 681
SsiI CCGC 2 cut(s) 113, 210
SspMI CTAG 2 cut(s) 431, 668
StyD4I CCNGG 1 cut(s) 630
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 471, 637
TasI AATT 3 cut(s) 409, 441, 681
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 2 cut(s) 504, 709
Tru9I TTAA 2 cut(s) 504, 709
TscAI CASTG 5 cut(s) 42, 154, 241, 277, 291
TseI GCWGC 4 cut(s) 263, 266, 344, 362
TspDTI ATGAA 4 cut(s) 17, 545, 549, 674
TspGWI ACGGA 2 cut(s) 109, 644
TspRI CASTG 5 cut(s) 42, 154, 241, 277, 291
XapI RAATTY 2 cut(s) 441, 681
XspI CTAG 2 cut(s) 431, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.