Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

47163549 .. 47164905

Gene Structure 1357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1355300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCAAGAGCTCTCACAATCACTTTCGGTGAAGACGATCGTTACTGGCGCTGGAACCCCGTGTACGCAGCCAGGTACCGAAAACTTGAATCCTTCTGTCTACGTTGATGCTGCTGAACTGTTAGATGTATTATCGCTAGAAGTGAAAGGGGATTTTGAGACCGCATACCTGACACCCGGAACTGTGTATGAAGTTTCATATATAATCATGATGAAGGACCCAAAATATGGATGGGAAGATAAAGTCGAATTCAGCGTCACTCCCCCTCAGAACCTGCAGATTGTCCCGAGAAACTCTACACTTGATCTGAGGACAAAAGGAAGATGGTGGAGTTATGTCCGAGTTGCCGAATTTACAACATCGCCTGGGCAATCTGGCCGGATGTATTTTATGCTCCGTCAAACTGTTGGGAAATGGAAGAAAGGGCTTGTTATCAAGGGTGTCGACATTACTCCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

154

Amino Acids

17.14

Weight (kDa)

7.75

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	33 - 152	8.3e-21	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccI	GTMKAC	2 cut(s)	99, 444
AciI	CCGC	1 cut(s)	162
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	248, 350
AfaI	GTAC	2 cut(s)	64, 76
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	70, 364
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	2 cut(s)	67, 110
ApoI	RAATTY	2 cut(s)	248, 350
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
Asp718I	GGTACC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	79, 97
BccI	CCATC	2 cut(s)	225, 318
BciT130I	CCWGG	2 cut(s)	72, 366
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	2 cut(s)	68, 111
BlsI	GCNGC	2 cut(s)	69, 112
Bme1390I	CCNGG	3 cut(s)	72, 177, 366
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	3 cut(s)	55, 76, 219
BmrFI	CCNGG	3 cut(s)	72, 177, 366
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	72, 366
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	236, 387
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	281, 299
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	79, 97
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	177, 379
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	378
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	36, 304
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	2 cut(s)	280, 300
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	55, 76, 219
BspMAI	CTGCAG	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	2 cut(s)	36, 304
Bst2UI	CCWGG	2 cut(s)	72, 366
Bst4CI	ACNGT	3 cut(s)	120, 184, 406
BstDEI	CTNAG	2 cut(s)	267, 308
BstF5I	GGATG	2 cut(s)	236, 387
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	39, 307
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	2 cut(s)	36, 304
BstMCI	CGRYCG	1 cut(s)	39
BstNI	CCWGG	2 cut(s)	72, 366
BstSCI	CCNGG	3 cut(s)	70, 175, 364
BstSFI	CTRYAG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	79, 97
BstV2I	GAAGAC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	378
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	236, 387
BveI	ACCTGC	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	274
CciI	TCATGA	1 cut(s)	207
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	217
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	63, 75
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	4 cut(s)	10, 70, 378, 427
CviKI_1	RGCY	4 cut(s)	10, 70, 378, 427
CviQI	GTAC	2 cut(s)	63, 75
DdeI	CTNAG	2 cut(s)	267, 308
DpnI	GATC	2 cut(s)	38, 306
DpnII	GATC	2 cut(s)	36, 304
EaeI	YGGCCR	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	70, 364
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	1 cut(s)	211
FaiI	YATR	9 cut(s)	166, 189, 199, 201, 203, 209, 228, 336, 392
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	207
FblI	GTMKAC	2 cut(s)	99, 444
Fnu4HI	GCNGC	2 cut(s)	68, 111
FokI	GGATG	2 cut(s)	243, 394
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	68, 111
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	2 cut(s)	68, 111
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	2 cut(s)	177, 379
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	2 cut(s)	177, 379
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	3 cut(s)	63, 100, 445
Hpy188I	TCNGA	3 cut(s)	270, 309, 341
Hpy188III	TCNNGA	2 cut(s)	208, 286
Hpy8I	GTNNAC	3 cut(s)	63, 100, 445
HpyAV	CCTTC	2 cut(s)	102, 208
HpyCH4III	ACNGT	3 cut(s)	120, 184, 406
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	4, 277
HpyF3I	CTNAG	2 cut(s)	267, 308
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	1 cut(s)	48
KpnI	GGTACC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	36, 304
LmnI	GCTCC	1 cut(s)	399
Lsp1109I	GCAGC	2 cut(s)	79, 97
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	40, 256
MalI	GATC	2 cut(s)	38, 306
MboI	GATC	2 cut(s)	36, 304
MboII	GAAGA	4 cut(s)	43, 248, 333, 430
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	248, 350
MnlI	CCTC	2 cut(s)	276, 303
MspI	CCGG	2 cut(s)	177, 379
MspR9I	CCNGG	3 cut(s)	72, 177, 366
MvaI	CCWGG	2 cut(s)	72, 366
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	36, 304
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	3 cut(s)	55, 76, 219
NmuCI	GTSAC	1 cut(s)	256
PagI	TCATGA	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 252
PfeI	GAWTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	69, 112
Ple19I	CGATCG	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	70, 364
PspGI	CCWGG	2 cut(s)	70, 364
PspN4I	GGNNCC	3 cut(s)	55, 76, 219
PspPI	GGNCC	1 cut(s)	217
PspPPI	RGGWCCY	1 cut(s)	217
PsrI	GAACNNNNNNTAC	2 cut(s)	46, 78
PstI	CTGCAG	1 cut(s)	279
PstNI	CAGNNNCTG	1 cut(s)	274
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	2 cut(s)	64, 76
RsaNI	GTAC	2 cut(s)	63, 75
SacI	GAGCTC	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	443
SatI	GCNGC	2 cut(s)	68, 111
Sau3AI	GATC	2 cut(s)	36, 304
Sau96I	GGNCC	1 cut(s)	217
ScrFI	CCNGG	3 cut(s)	72, 177, 366
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	5 cut(s)	12, 76, 105, 171, 276
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	217
Sse9I	AATT	2 cut(s)	248, 350
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	3 cut(s)	70, 175, 364
TaaI	ACNGT	3 cut(s)	120, 184, 406
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	246, 444
TasI	AATT	2 cut(s)	248, 350
TfiI	GAWTC	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	67, 110
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	3 cut(s)	186, 204, 227
TspGWI	ACGGA	1 cut(s)	386
Van91I	CCANNNNNTGG	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	2 cut(s)	248, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	228
XmiI	GTMKAC	2 cut(s)	99, 444
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.