Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

5621311 .. 5622257

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G107700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATTTTGAGAGATGCTGACTCACCCATCAACAAATCCTCAGTGGAAAACCTTCTTGAACAGCTCCGTGCTGGAATAATCTTAAACCAAAAGAGAAAGAAGTATTGGGTTGACAAGAAGTCCAACAACTGCTTTATGGTGTATGCTAGGGATCTCTCGATCTCTTGGGCTGAAGACGATCGTAACTGGCTCTGGCCCTCCCTGCAAGAAACCAGTGGTGTCTTCATTGATGCTGCTGAAATGATTAATGAATGTTGGCTAGAAGTGCATGGACAATTTGAGACTACAAAGCTGTCACCAGGAACTCTGTATGAAGTTGCGTTTGTGGTCAAGCTGAAGGCTTCAGCTGAAGGATGGGATGTTCCAGTGAATGTCAGTCTCACTCTTCCAGATGATAGCAAACAATGGCATGAAGTTAAGTTGAAGGAAATCCCAAGAGAGCAATGGATAGATATTTCGGTTGGCGAGTTTAGAGCATCACCGGAAATACCTGGGGACATGGAGTTTTCGATGTATGAATATGATAGTGGGAAATGGAATAGAGGACTTGTTATCAAGGGTGTTATCATTCGGCCTAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

194

Amino Acids

22.26

Weight (kDa)

5.1

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	156
AcuI	CTGAAG	4 cut(s)	189, 324, 353, 366
AgsI	TTSAA	2 cut(s)	56, 421
AhdI	GACNNNNNGTC	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	295, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	4 cut(s)	61, 289, 331, 344
AluI	AGCT	4 cut(s)	61, 289, 331, 344
Alw26I	GTCTC	2 cut(s)	272, 380
AlwI	GGATC	1 cut(s)	156
AoxI	GGCC	2 cut(s)	191, 569
ApeKI	GCWGC	1 cut(s)	230
AseI	ATTAAT	1 cut(s)	243
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	3 cut(s)	12, 285, 468
BbsI	GAAGAC	2 cut(s)	177, 211
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	32, 345
BciT130I	CCWGG	2 cut(s)	297, 489
BcoDI	GTCTC	2 cut(s)	272, 380
BfaI	CTAG	2 cut(s)	144, 257
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	297, 489
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	192
BmrFI	CCNGG	2 cut(s)	297, 489
BmsI	GCATC	2 cut(s)	217, 482
BpiI	GAAGAC	2 cut(s)	177, 211
BsaJI	CCNNGG	1 cut(s)	488
BsaWI	WCCGGW	1 cut(s)	478
Bse1I	ACTGG	3 cut(s)	188, 210, 362
Bse3DI	GCAATG	1 cut(s)	446
BseBI	CCWGG	2 cut(s)	297, 489
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	2 cut(s)	356, 361
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	3 cut(s)	188, 210, 362
BseXI	GCAGC	1 cut(s)	217
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	193, 571
BsiEI	CGRYCG	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	506
BsmAI	GTCTC	2 cut(s)	272, 380
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	193, 571
Bsp143I	GATC	3 cut(s)	148, 156, 175
BspANI	GGCC	2 cut(s)	193, 571
BspCNI	CTCAG	1 cut(s)	50
BspPI	GGATC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	188, 210, 362
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	3 cut(s)	148, 156, 175
Bst2UI	CCWGG	2 cut(s)	297, 489
Bst6I	CTCTTC	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	356, 361
BstKTI	GATC	3 cut(s)	151, 159, 178
BstMAI	GTCTC	2 cut(s)	272, 380
BstMBI	GATC	3 cut(s)	148, 156, 175
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 262
BstNI	CCWGG	2 cut(s)	297, 489
BstSCI	CCNGG	2 cut(s)	295, 487
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	2 cut(s)	177, 211
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	193, 571
BtsCI	GGATG	2 cut(s)	356, 361
BtsIMutI	CAGTG	3 cut(s)	45, 217, 369
Cfr13I	GGNCC	1 cut(s)	192
CviAII	CATG	3 cut(s)	266, 407, 496
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	3 cut(s)	150, 158, 177
DpnII	GATC	3 cut(s)	148, 156, 175
DriI	GACNNNNNGTC	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	387
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	387
Eco57I	CTGAAG	4 cut(s)	189, 324, 353, 366
EcoRII	CCWGG	2 cut(s)	295, 487
FaeI	CATG	3 cut(s)	269, 410, 499
FaiI	YATR	8 cut(s)	134, 141, 267, 309, 408, 497, 513, 519
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	3 cut(s)	265, 406, 495
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	2 cut(s)	363, 368
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	144, 257
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	193, 571
HapII	CCGG	1 cut(s)	479
Hin1II	CATG	3 cut(s)	269, 410, 499
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	3 cut(s)	12, 285, 468
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	53, 154, 386
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	4 cut(s)	59, 328, 341, 415
HpyCH4V	TGCA	2 cut(s)	202, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 262
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	3 cut(s)	269, 410, 499
Kzo9I	GATC	3 cut(s)	148, 156, 175
LmnI	GCTCC	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	2 cut(s)	217, 482
MaeI	CTAG	2 cut(s)	144, 257
MaeIII	GTNAC	2 cut(s)	179, 291
MalI	GATC	3 cut(s)	150, 158, 177
MboI	GATC	3 cut(s)	148, 156, 175
MboII	GAAGA	3 cut(s)	182, 211, 374
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	2 cut(s)	272, 577
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	3 cut(s)	46, 205, 533
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	4 cut(s)	80, 243, 414, 580
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	297, 489
MvaI	CCWGG	2 cut(s)	297, 489
MwoI	GCNNNNNNNGC	2 cut(s)	199, 262
NdeII	GATC	3 cut(s)	148, 156, 175
NlaIII	CATG	3 cut(s)	269, 410, 499
NmuCI	GTSAC	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	232
Ple19I	CGATCG	1 cut(s)	178
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PshBI	ATTAAT	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	295, 487
PspGI	CCWGG	2 cut(s)	295, 487
PspPI	GGNCC	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	148
PvuI	CGATCG	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	344
SaqAI	TTAA	4 cut(s)	80, 243, 414, 580
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	148, 156, 175
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	297, 489
SetI	ASST	6 cut(s)	51, 63, 291, 333, 346, 490
SfaNI	GCATC	2 cut(s)	217, 482
Sse9I	AATT	2 cut(s)	272, 577
SspMI	CTAG	2 cut(s)	144, 257
StyD4I	CCNGG	2 cut(s)	295, 487
TaqI	TCGA	2 cut(s)	155, 506
TasI	AATT	2 cut(s)	272, 577
Tru1I	TTAA	4 cut(s)	80, 243, 414, 580
Tru9I	TTAA	4 cut(s)	80, 243, 414, 580
TscAI	CASTG	3 cut(s)	45, 217, 369
TseFI	GTSAC	1 cut(s)	291
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	291
TspDTI	ATGAA	5 cut(s)	211, 261, 324, 423, 528
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	3 cut(s)	45, 217, 369
VspI	ATTAAT	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	2 cut(s)	144, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.