Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Forward (+)

14297065 .. 14302377

Gene Structure 5313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG164900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGAACGGGGTGCTCACGATATGAGGCCTCACAGTCGCAGCAGCTGAGACCTGGAGAACCAAGCAACAAGAAGTATTGGGTTGACAAGAAGTCCAACAACTGCTTCATGTTGTATCCAAGGGATCTCTCGATCGCTTGGGCTGATGACAAACGTTACTGGCACTGGTCTTCCCTGGAAGAAACAAGTAATGTCTTTATCGATGTCGCTGAACTGTTAAAGGTCTGCTGGCTTGAAGTCAATGGAAAAATTGATTCCACAAAGCTGTCACCAGGAACCCTATATGAAGTAGTCTTTATAGTGATGTTGAAAGCTGCAGCTTATGGATGGAAAGTTCCTGTCAATGTCCGCCTCACTCTCCCAGATGGTAACAGGCAAGAACGTAAAGCTGATCTGAATAAAATCCCTAGAGAACAATGGACAGAGATACCAGTAGGCGAGTTTAGAGCATCAACAAAATTACTTGGGAACATTGAATTTTCGATGTATGAATATGAATATGGAGGTGAGAAATGGAAGAGTGGACTTGTGATCAAGGGCGTTGCCGTTCGGCCTAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

187

Amino Acids

21.52

Weight (kDa)

8.86

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	34 - 185	1.8e-45	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	349
AclI	AACGTT	1 cut(s)	154
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	476
AgsI	TTSAA	3 cut(s)	236, 310, 476
AhdI	GACNNNNNGTC	1 cut(s)	91
AjnI	CCWGG	3 cut(s)	52, 174, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	5 cut(s)	46, 265, 314, 320, 389
AluI	AGCT	5 cut(s)	46, 265, 314, 320, 389
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	2 cut(s)	27, 551
ApeKI	GCWGC	4 cut(s)	40, 43, 314, 317
ApoI	RAATTY	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	261, 518
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	4 cut(s)	52, 55, 301, 329
BccI	CCATC	2 cut(s)	321, 359
BceAI	ACGGC	1 cut(s)	530
BciT130I	CCWGG	3 cut(s)	54, 176, 273
BciVI	GTATCC	1 cut(s)	126
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	126
BisI	GCNGC	4 cut(s)	41, 44, 315, 318
BlsI	GCNGC	4 cut(s)	42, 45, 316, 319
Bme1390I	CCNGG	3 cut(s)	54, 176, 273
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	3 cut(s)	54, 176, 273
BmsI	GCATC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	119, 174
Bse1I	ACTGG	3 cut(s)	164, 170, 431
BseBI	CCWGG	3 cut(s)	54, 176, 273
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	119, 174
BseGI	GGATG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	3 cut(s)	164, 170, 431
BseXI	GCAGC	4 cut(s)	52, 55, 301, 329
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	29, 553
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	29, 553
Bso31I	GGTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	4 cut(s)	124, 132, 391, 531
BspACI	CCGC	1 cut(s)	349
BspANI	GGCC	2 cut(s)	29, 553
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	43
BsrI	ACTGG	3 cut(s)	164, 170, 431
BssECI	CCNNGG	2 cut(s)	119, 174
BssMI	GATC	4 cut(s)	124, 132, 391, 531
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	3 cut(s)	54, 176, 273
Bst4CI	ACNGT	2 cut(s)	36, 216
Bst6I	CTCTTC	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	4 cut(s)	127, 135, 394, 534
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	4 cut(s)	124, 132, 391, 531
BstMCI	CGRYCG	1 cut(s)	135
BstNI	CCWGG	3 cut(s)	54, 176, 273
BstSCI	CCNGG	3 cut(s)	52, 174, 271
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	4 cut(s)	52, 55, 301, 329
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	29, 553
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	230
CaiI	CAGNNNCTG	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	201
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	9 cut(s)	29, 46, 143, 232, 265, 314, 320, 389, 553
CviKI_1	RGCY	9 cut(s)	29, 46, 143, 232, 265, 314, 320, 389, 553
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	126, 134, 393, 533
DpnII	GATC	4 cut(s)	124, 132, 391, 531
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	512
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	512
EciI	GGCGGA	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	52, 174, 271
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	1 cut(s)	112
FaiI	YATR	9 cut(s)	24, 110, 283, 285, 299, 324, 489, 495, 501
FatI	CATG	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	4 cut(s)	41, 44, 315, 318
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	4 cut(s)	41, 44, 315, 318
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	4 cut(s)	41, 44, 315, 318
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	29, 553
Hin1II	CATG	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	2 cut(s)	261, 518
Hpy166II	GTNNAC	2 cut(s)	85, 524
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	2 cut(s)	18, 130
Hpy8I	GTNNAC	2 cut(s)	85, 524
HpyCH4III	ACNGT	2 cut(s)	36, 216
HpyCH4IV	ACGT	2 cut(s)	154, 382
HpyCH4V	TGCA	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	154, 382
Hsp92II	CATG	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	124, 132, 391, 531
Lsp1109I	GCAGC	4 cut(s)	52, 55, 301, 329
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	2 cut(s)	154, 382
MaeIII	GTNAC	3 cut(s)	155, 267, 368
MalI	GATC	4 cut(s)	126, 134, 393, 533
MboI	GATC	4 cut(s)	124, 132, 391, 531
MboII	GAAGA	3 cut(s)	162, 191, 529
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	3 cut(s)	249, 458, 476
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	4 cut(s)	19, 40, 362, 497
MseI	TTAA	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	46
MspR9I	CCNGG	3 cut(s)	54, 176, 273
MvaI	CCWGG	3 cut(s)	54, 176, 273
NdeII	GATC	4 cut(s)	124, 132, 391, 531
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	267
PceI	AGGCCT	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	42, 45, 316, 319
Ple19I	CGATCG	1 cut(s)	135
Psp1406I	AACGTT	1 cut(s)	154
Psp6I	CCWGG	3 cut(s)	52, 174, 271
PspGI	CCWGG	3 cut(s)	52, 174, 271
PspN4I	GGNNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	124
PvuI	CGATCG	1 cut(s)	135
PvuII	CAGCTG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	4 cut(s)	41, 44, 315, 318
Sau3AI	GATC	4 cut(s)	124, 132, 391, 531
ScrFI	CCNGG	3 cut(s)	54, 176, 273
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	249, 458, 476
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	349
SspMI	CTAG	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	52, 174, 271
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	36, 216
TaiI	ACGT	2 cut(s)	157, 385
TaqI	TCGA	3 cut(s)	131, 201, 482
TasI	AATT	3 cut(s)	249, 458, 476
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	4 cut(s)	40, 43, 314, 317
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	4 cut(s)	97, 300, 504, 510
TspRI	CASTG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	476
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.