Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Forward (+)

14839549 .. 14840466

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG144500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGGACAGGGTGGTCACAAGATGAAGCCTCACAGTCGCAGCAGCTGAGGCCTGGAGAACCAAGTAACAAGAAGTACTGGGTTGACAAGAAGTCCAACAACTGCTTCATGGTGTATCCAAGGGATCTCACAATCACTTGGGCTGACGACAAACGTTACTGGCACTGGCCTTCCCTGGCAGAAACAAGTAATGTCTTCATCGATGTTGCTGAACTGTTAAGGGTATGCTGGCTTGAAGTTCATGGAAAAATTGATTCCACAAAGCTGTCACCAGGAACCCTATATGAAGTAGTATTTATAGTGATGTTGAAAGCTGCAGCTTATGGATGGAAAGTTCCTGTCAATGTCAGCCTCACTCTCCCAGATGGTAACAAGCAAGAGCGTAAAGCTGATCTGAATAAAATCCCAAGAGAACAATGGACAGAGATACCAGTAGGCGAGTTTAGAGCATCACCAGGATTACTTGGGAACATTGAAATTTCGATGTATCAATATGATGATGGCGGGATATGGAAGAGCGGACTTTTGATCAAGGGCGTTGCCGTTCGGCCTAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

186

Amino Acids

21.13

Weight (kDa)

7.71

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	34 - 184	8.1e-44	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccBSI	CCGCTC	1 cut(s)	519
AciI	CCGC	2 cut(s)	504, 519
AclI	AACGTT	1 cut(s)	154
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	477
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	236, 310, 476
AhdI	GACNNNNNGTC	1 cut(s)	91
AjnI	CCWGG	4 cut(s)	52, 174, 271, 454
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	6 cut(s)	46, 265, 314, 320, 389, 558
AluI	AGCT	6 cut(s)	46, 265, 314, 320, 389, 558
AlwI	GGATC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	3 cut(s)	50, 167, 548
ApeKI	GCWGC	4 cut(s)	40, 43, 314, 317
ApoI	RAATTY	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	261, 444
BbsI	GAAGAC	1 cut(s)	187
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	4 cut(s)	52, 55, 301, 329
BccI	CCATC	3 cut(s)	321, 359, 494
BceAI	ACGGC	1 cut(s)	527
BciT130I	CCWGG	4 cut(s)	54, 176, 273, 456
BciVI	GTATCC	1 cut(s)	126
BclI	TGATCA	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	126
BisI	GCNGC	4 cut(s)	41, 44, 315, 318
BlsI	GCNGC	4 cut(s)	42, 45, 316, 319
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	4 cut(s)	54, 176, 273, 456
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	4 cut(s)	54, 176, 273, 456
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	458
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	119, 174
Bse1I	ACTGG	4 cut(s)	83, 164, 170, 431
BseBI	CCWGG	4 cut(s)	54, 176, 273, 456
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	119, 174
BseGI	GGATG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	4 cut(s)	83, 164, 170, 431
BseXI	GCAGC	4 cut(s)	52, 55, 301, 329
BshFI	GGCC	3 cut(s)	52, 169, 550
BshVI	ATCGAT	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	3 cut(s)	52, 169, 550
Bsp143I	GATC	3 cut(s)	124, 391, 528
BspACI	CCGC	2 cut(s)	504, 519
BspANI	GGCC	3 cut(s)	52, 169, 550
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	1 cut(s)	132
BspQI	GCTCTTC	1 cut(s)	509
BsrBI	CCGCTC	1 cut(s)	519
BsrI	ACTGG	4 cut(s)	83, 164, 170, 431
BssECI	CCNNGG	2 cut(s)	119, 174
BssMI	GATC	3 cut(s)	124, 391, 528
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	4 cut(s)	54, 176, 273, 456
Bst4CI	ACNGT	2 cut(s)	36, 216
Bst6I	CTCTTC	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	3 cut(s)	127, 394, 531
BstMBI	GATC	3 cut(s)	124, 391, 528
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	4 cut(s)	54, 176, 273, 456
BstSCI	CCNGG	4 cut(s)	52, 174, 271, 454
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	4 cut(s)	52, 55, 301, 329
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	52, 169, 550
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	230
CaiI	CAGNNNCTG	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	109, 242
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	3 cut(s)	126, 393, 530
DpnII	GATC	3 cut(s)	124, 391, 528
DrdI	GACNNNNNNGTC	1 cut(s)	13
DriI	GACNNNNNGTC	1 cut(s)	91
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	509
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	52
EcoRII	CCWGG	4 cut(s)	52, 174, 271, 454
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	2 cut(s)	112, 245
FaiI	YATR	9 cut(s)	110, 226, 243, 283, 285, 299, 324, 495, 511
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	108, 241
FauI	CCCGC	1 cut(s)	497
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	4 cut(s)	41, 44, 315, 318
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	4 cut(s)	41, 44, 315, 318
GluI	GCNGC	4 cut(s)	41, 44, 315, 318
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	52, 169, 550
Hin1II	CATG	2 cut(s)	112, 245
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	2 cut(s)	261, 444
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	396
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	2 cut(s)	36, 216
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	112, 245
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	124, 391, 528
LguI	GCTCTTC	1 cut(s)	509
Lsp1109I	GCAGC	4 cut(s)	52, 55, 301, 329
LweI	GCATC	1 cut(s)	458
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	5 cut(s)	15, 65, 155, 267, 368
MalI	GATC	3 cut(s)	126, 393, 530
MbiI	CCGCTC	1 cut(s)	519
MboI	GATC	3 cut(s)	124, 391, 528
MboII	GAAGA	2 cut(s)	187, 526
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	2 cut(s)	249, 477
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	3 cut(s)	40, 42, 362
MseI	TTAA	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	46
MspR9I	CCNGG	4 cut(s)	54, 176, 273, 456
MvaI	CCWGG	4 cut(s)	54, 176, 273, 456
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	3 cut(s)	124, 391, 528
NlaIII	CATG	2 cut(s)	112, 245
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	15, 267
PceI	AGGCCT	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	509
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	42, 45, 316, 319
Psp1406I	AACGTT	1 cut(s)	154
Psp6I	CCWGG	4 cut(s)	52, 174, 271, 454
PspGI	CCWGG	4 cut(s)	52, 174, 271, 454
PspN4I	GGNNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	4 cut(s)	41, 44, 315, 318
Sau3AI	GATC	3 cut(s)	124, 391, 528
ScaI	AGTACT	1 cut(s)	77
ScrFI	CCNGG	4 cut(s)	54, 176, 273, 456
SetI	ASST	7 cut(s)	48, 157, 267, 316, 322, 391, 560
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	315
Sse9I	AATT	2 cut(s)	249, 477
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	2 cut(s)	504, 519
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	4 cut(s)	52, 174, 271, 454
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	36, 216
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	201, 482
TasI	AATT	2 cut(s)	249, 477
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	2 cut(s)	15, 267
TseI	GCWGC	4 cut(s)	40, 43, 314, 317
Tsp45I	GTSAC	2 cut(s)	15, 267
TspDTI	ATGAA	5 cut(s)	39, 97, 187, 230, 300
TspRI	CASTG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.