Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Forward (+)

2819764 .. 2821175

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G030200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGGATTGTGCCCTCACAGCCAACTAGTGGACAAACAACTAGTAACAATGCATCGGAGAAACCAACTGAAGGAGGGCCTTCATCTACTGCAGCTCCCTCTGATAATCAGAAGGTAGAAGTCAAAAACGCTTCTGATAATCAGAAGACAGAAACACAATCACCTGTGCAGACGTATGGTGATGGAAAGTCCAAATGTTGTATGGTGTATGCAAAGGATCTCGATATCACTTGGTCTGGAGACACTCGTTACTGGCGATGGGTCAAAGAAACTAGTGGTGGCAACTTCGAAGCTGCTGAACTGTTAAATGTGTGTTGGCTAGAAGTGCGTGGAAAACTTTCGACCACAGACCTCTCACCAGGAACTCTGTATGAAGTTGTATTTGTGGTCAAGATGAAAACTAAAGCTTATGGATGGGATGCCCCAGTGAATTTGAAATTCACTCCCCCAGATGGTGCAGTTTCAAGGGAGACGACAATTAAATTGACGGATTTGAAGGATAGTAAAGATGAATGGAAAGATATTCCGTTTGGTGAGTTTAAAGCTCCCGCAAATCCTGGGAACATTGAGTTTTTGTTGTATGAATATGGTGGGAGATGGAAGAGCGGACTTGTTATCAAGGGTGTTGCCGTTCGACCAAAGAGCCAAGTTGCAGAATATTATTGCAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

225

Amino Acids

24.67

Weight (kDa)

5.72

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccBSI	CCGCTC	1 cut(s)	606
AciI	CCGC	2 cut(s)	549, 606
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	430, 437
AcuI	CTGAAG	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	29, 71, 452
AgsI	TTSAA	3 cut(s)	436, 465, 496
AhlI	ACTAGT	3 cut(s)	26, 41, 272
AjnI	CCWGG	2 cut(s)	358, 556
AluBI	AGCT	4 cut(s)	95, 293, 407, 545
AluI	AGCT	4 cut(s)	95, 293, 407, 545
Alw26I	GTCTC	2 cut(s)	234, 464
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	92, 293
ApoI	RAATTY	2 cut(s)	430, 437
Asp700I	GAANNNNTTC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	4 cut(s)	153, 191, 348, 545
AsuII	TTCGAA	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	104, 280
BccI	CCATC	5 cut(s)	176, 252, 408, 446, 591
BceAI	ACGGC	1 cut(s)	614
BciT130I	CCWGG	2 cut(s)	360, 558
BcoDI	GTCTC	2 cut(s)	234, 464
BcuI	ACTAGT	3 cut(s)	26, 41, 272
BfaI	CTAG	5 cut(s)	27, 42, 273, 320, 673
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	93, 294
BlsI	GCNGC	2 cut(s)	94, 295
Bme1390I	CCNGG	2 cut(s)	360, 558
BmgT120I	GGNCC	1 cut(s)	77
BmrFI	CCNGG	2 cut(s)	360, 558
BmrI	ACTGGG	1 cut(s)	419
BmsI	GCATC	2 cut(s)	62, 409
BmuI	ACTGGG	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	557
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 71, 452
Bse1I	ACTGG	2 cut(s)	257, 425
BseBI	CCWGG	2 cut(s)	360, 558
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	2 cut(s)	419, 424
BseLI	CCNNNNNNNGG	3 cut(s)	29, 71, 452
BseNI	ACTGG	2 cut(s)	257, 425
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	104, 280
BsgI	GTGCAG	2 cut(s)	188, 477
BshFI	GGCC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	29, 71, 452
BsmAI	GTCTC	2 cut(s)	234, 464
BsmBI	CGTCTC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	2 cut(s)	549, 606
BspANI	GGCC	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	225
BspQI	GCTCTTC	1 cut(s)	596
BspT104I	TTCGAA	1 cut(s)	288
BsrBI	CCGCTC	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	257, 425
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	1 cut(s)	217
Bst2UI	CCWGG	2 cut(s)	360, 558
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	596
BstBI	TTCGAA	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	419, 424
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	234, 464
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 325
BstNI	CCWGG	2 cut(s)	360, 558
BstSCI	CCNGG	2 cut(s)	358, 556
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	104, 280
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	419, 424
BtsIMutI	CAGTG	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	77
CviJI	RGCY	8 cut(s)	22, 79, 95, 293, 319, 407, 545, 645
CviKI_1	RGCY	8 cut(s)	22, 79, 95, 293, 319, 407, 545, 645
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraI	TTTAAA	1 cut(s)	541
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
Eco32I	GATATC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	358, 556
EcoRV	GATATC	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	464
FaiI	YATR	7 cut(s)	177, 203, 210, 372, 411, 582, 588
FauI	CCCGC	1 cut(s)	556
Fnu4HI	GCNGC	2 cut(s)	93, 294
FokI	GGATG	2 cut(s)	426, 431
Fsp4HI	GCNGC	2 cut(s)	93, 294
FspBI	CTAG	5 cut(s)	27, 42, 273, 320, 673
GluI	GCNGC	2 cut(s)	93, 294
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	405
HphI	GGTGA	4 cut(s)	153, 191, 348, 545
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	5 cut(s)	58, 103, 111, 136, 144
Hpy188III	TCNNGA	3 cut(s)	221, 237, 391
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	65, 90, 106, 490
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	7 cut(s)	53, 92, 169, 212, 458, 653, 666
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 325
HpySE526I	ACGT	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	217
LguI	GCTCTTC	1 cut(s)	596
LmnI	GCTCC	2 cut(s)	100, 550
LpnPI	CCDG	9 cut(s)	177, 222, 238, 345, 372, 438, 462, 543, 570
Lsp1109I	GCAGC	2 cut(s)	104, 280
LweI	GCATC	2 cut(s)	62, 409
MaeI	CTAG	5 cut(s)	27, 42, 273, 320, 673
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	44, 248
MalI	GATC	1 cut(s)	219
MbiI	CCGCTC	1 cut(s)	606
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	157, 613
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	430, 437, 477, 482
MnlI	CCTC	4 cut(s)	25, 68, 109, 362
Mph1103I	ATGCAT	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	337
MseI	TTAA	3 cut(s)	305, 480, 540
MspR9I	CCNGG	2 cut(s)	360, 558
MvaI	CCWGG	2 cut(s)	360, 558
MwoI	GCNNNNNNNGC	2 cut(s)	19, 325
NdeII	GATC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	94, 295
Psp6I	CCWGG	2 cut(s)	358, 556
PspGI	CCWGG	2 cut(s)	358, 556
PspPI	GGNCC	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	217
SapI	GCTCTTC	1 cut(s)	596
SaqAI	TTAA	3 cut(s)	305, 480, 540
SatI	GCNGC	2 cut(s)	93, 294
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	360, 558
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	8 cut(s)	97, 117, 166, 176, 295, 354, 409, 547
SfaNI	GCATC	2 cut(s)	62, 409
SfcI	CTRYAG	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	288
SpeI	ACTAGT	3 cut(s)	26, 41, 272
Sse9I	AATT	4 cut(s)	430, 437, 477, 482
SsiI	CCGC	2 cut(s)	549, 606
SspI	AATATT	1 cut(s)	659
SspMI	CTAG	5 cut(s)	27, 42, 273, 320, 673
StyD4I	CCNGG	2 cut(s)	358, 556
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	4 cut(s)	222, 288, 341, 634
TasI	AATT	4 cut(s)	430, 437, 477, 482
Tru1I	TTAA	3 cut(s)	305, 480, 540
Tru9I	TTAA	3 cut(s)	305, 480, 540
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	2 cut(s)	92, 293
TspDTI	ATGAA	5 cut(s)	72, 387, 410, 525, 597
TspGWI	ACGGA	2 cut(s)	503, 516
TspRI	CASTG	1 cut(s)	432
Van91I	CCANNNNNTGG	1 cut(s)	29
XapI	RAATTY	2 cut(s)	430, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	5 cut(s)	27, 42, 273, 320, 673
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.