Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Forward (+)

2798164 .. 2799203

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G030000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCATGGAAATGACCAACTTAGCCCTGTTTTTACCTATATAAGCAACAAAAGAATTGGATGGAAGACGTATATTGAAGAGATGGAGGAGTCCAAAAATGACTATATGGTCTGTGCAAGGGATCTCAAAATCATTTGGTCTAGAGACCGTCGTTACTGGCGATGGGTCAAAGAGACAGAAAACAGTTACGTTGCTGAACTGTTAAATGTATGTTGGCTAAAAGTGAGTGGAAAAGTTGAGAACTCAAACCTGTCACCAGGAACTCAGTATGAAGTTGTACTTGTGGCCAAGATGAAAACTAGAGCTTATGGATGGGATGCTCCAGTGAATTTCAAATTCACTCACCCAGGTGGTACAAAGGACTGGACCATTAATTTGGAGAATAAGTTTAAGGATAGTAAAGATCAGTGGAAAGATATTAAGTTGGGTGAGTTTATTGCATCTGCAAATCCAGGGGACATCGAGTTTTGGCTGTATAAATATGGTGGGAAATGGAAGAGCGGACTTGTTATCAAGGGTGTTGCCGTTCGACCAAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

181

Amino Acids

21.03

Weight (kDa)

9.27

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	501
AciI	CCGC	1 cut(s)	501
AclWI	GGATC	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	328, 335
AfaI	GTAC	2 cut(s)	279, 355
AgsI	TTSAA	2 cut(s)	77, 334
AjnI	CCWGG	3 cut(s)	256, 346, 451
AleI	CACNNNNGTG	1 cut(s)	348
AluBI	AGCT	2 cut(s)	305, 540
AluI	AGCT	2 cut(s)	305, 540
Alw26I	GTCTC	2 cut(s)	138, 167
AlwI	GGATC	1 cut(s)	129
AoxI	GGCC	1 cut(s)	285
ApoI	RAATTY	2 cut(s)	328, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	3 cut(s)	246, 335, 440
AvaII	GGWCC	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	71
BccI	CCATC	4 cut(s)	54, 76, 156, 306
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	3 cut(s)	258, 348, 453
BcoDI	GTCTC	2 cut(s)	138, 167
BfaI	CTAG	2 cut(s)	141, 300
Bme1390I	CCNGG	3 cut(s)	258, 348, 453
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	366
BmrFI	CCNGG	3 cut(s)	258, 348, 453
BmsI	GCATC	2 cut(s)	307, 449
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	346, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bse1I	ACTGG	3 cut(s)	161, 323, 368
BseBI	CCWGG	3 cut(s)	258, 348, 453
BseDI	CCNNGG	2 cut(s)	346, 452
BseGI	GGATG	3 cut(s)	65, 317, 322
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	3 cut(s)	161, 323, 368
BseRI	GAGGAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	138, 167
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	287
Bso31I	GGTCTC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	121, 403
BspACI	CCGC	1 cut(s)	501
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	129
BspQI	GCTCTTC	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	138
BsrBI	CCGCTC	1 cut(s)	501
BsrI	ACTGG	3 cut(s)	161, 323, 368
BssECI	CCNNGG	2 cut(s)	346, 452
BssMI	GATC	2 cut(s)	121, 403
Bst2UI	CCWGG	3 cut(s)	258, 348, 453
Bst4CI	ACNGT	3 cut(s)	149, 185, 201
Bst6I	CTCTTC	2 cut(s)	72, 491
BstDEI	CTNAG	2 cut(s)	20, 264
BstF5I	GGATG	3 cut(s)	65, 317, 322
BstKTI	GATC	2 cut(s)	124, 406
BstMAI	GTCTC	2 cut(s)	138, 167
BstMBI	GATC	2 cut(s)	121, 403
BstNI	CCWGG	3 cut(s)	258, 348, 453
BstSCI	CCNGG	3 cut(s)	256, 346, 451
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	287
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	3 cut(s)	65, 317, 322
BtsIMutI	CAGTG	2 cut(s)	330, 413
Cfr13I	GGNCC	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	278, 354
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	6 cut(s)	24, 217, 287, 305, 472, 540
CviKI_1	RGCY	6 cut(s)	24, 217, 287, 305, 472, 540
CviQI	GTAC	2 cut(s)	278, 354
DdeI	CTNAG	2 cut(s)	20, 264
DpnI	GATC	2 cut(s)	123, 405
DpnII	GATC	2 cut(s)	121, 403
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	72, 491
EarI	CTCTTC	2 cut(s)	72, 491
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	366
EcoRII	CCWGG	3 cut(s)	256, 346, 451
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	8
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	1 cut(s)	4
FokI	GGATG	3 cut(s)	72, 324, 329
FspBI	CTAG	2 cut(s)	141, 300
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	8
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	3 cut(s)	246, 335, 440
Hpy188III	TCNNGA	1 cut(s)	141
Hpy99I	CGWCG	1 cut(s)	153
HpyCH4III	ACNGT	3 cut(s)	149, 185, 201
HpyCH4IV	ACGT	2 cut(s)	68, 189
HpyCH4V	TGCA	4 cut(s)	4, 116, 440, 446
HpyF3I	CTNAG	2 cut(s)	20, 264
HpySE526I	ACGT	2 cut(s)	68, 189
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	121, 403
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	1 cut(s)	325
LweI	GCATC	2 cut(s)	307, 449
MaeI	CTAG	2 cut(s)	141, 300
MaeII	ACGT	2 cut(s)	68, 189
MaeIII	GTNAC	3 cut(s)	152, 185, 252
MalI	GATC	2 cut(s)	123, 405
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	2 cut(s)	121, 403
MboII	GAAGA	3 cut(s)	76, 89, 508
MflI	RGATCY	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	4 cut(s)	54, 328, 335, 373
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	1 cut(s)	79
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	4 cut(s)	203, 372, 390, 420
MslI	CAYNNNNRTG	2 cut(s)	9, 348
Msp20I	TGGCCA	1 cut(s)	287
MspR9I	CCNGG	3 cut(s)	258, 348, 453
MvaI	CCWGG	3 cut(s)	258, 348, 453
NdeII	GATC	2 cut(s)	121, 403
NlaIII	CATG	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	3 cut(s)	256, 346, 451
PspGI	CCWGG	3 cut(s)	256, 346, 451
PspPI	GGNCC	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	279, 355
RsaNI	GTAC	2 cut(s)	278, 354
RseI	CAYNNNNRTG	2 cut(s)	9, 348
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	4 cut(s)	203, 372, 390, 420
Sau3AI	GATC	2 cut(s)	121, 403
Sau96I	GGNCC	1 cut(s)	366
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	258, 348, 453
SetI	ASST	7 cut(s)	38, 71, 192, 252, 307, 352, 542
SfaNI	GCATC	2 cut(s)	307, 449
SinI	GGWCC	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	9, 348
Sse9I	AATT	4 cut(s)	54, 328, 335, 373
SsiI	CCGC	1 cut(s)	501
SspMI	CTAG	2 cut(s)	141, 300
StyD4I	CCNGG	3 cut(s)	256, 346, 451
TaaI	ACNGT	3 cut(s)	149, 185, 201
TaiI	ACGT	2 cut(s)	71, 192
TaqI	TCGA	2 cut(s)	462, 529
TasI	AATT	4 cut(s)	54, 328, 335, 373
TatI	WGTACW	1 cut(s)	277
Tru1I	TTAA	4 cut(s)	203, 372, 390, 420
Tru9I	TTAA	4 cut(s)	203, 372, 390, 420
TscAI	CASTG	2 cut(s)	330, 413
TseFI	GTSAC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	2 cut(s)	285, 308
TspRI	CASTG	2 cut(s)	330, 413
VpaK11BI	GGWCC	1 cut(s)	366
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	2 cut(s)	328, 335
XbaI	TCTAGA	1 cut(s)	140
XspI	CTAG	2 cut(s)	141, 300
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.