Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

38480134 .. 38481743

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1254200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGGACTGGGTGGTCACAAGATGGGGCCTCACAGTCACAGTCGCAGCCGCCTAGTGAGCAACCGACTAATAATAAAGTAGCGGCAGAGAAAGAAACAGAAGCAAAGCCGACTGTCTCTAAAGCCACGGTGATAGAGAGAACAGCTGCTGATCATCAGGCCAAGCCCTCGGCGAATAACAACCAGGAAGCCGCAGCAGCGAAAGAAGTCAAGGAAATAGAGAAAAGGACAGCAGCACAGCAAGTTAGGCAGCAGCAGCAGCAGTTCCCACATAACTACGAAGCCCTTGTGAAAGATGCTGACACACCTATCAACAAGTCCTCAATTGAAAACCTCTTGCAGCAGCTCCAAGCAGGAGTTCTCTTAAACCAAAAGAAAAAGAAGTATTGGGTTGATAAGAAGTCCAACAACTGTTTTATGGTGTATGCAAGAGATCTCTCTATCACTTGGGCTGAAGACAATCGTTACTGGCACTGGTACTCCCTGCAAGAAACCAGTGACGTCTTCATTGATGCTGCTGAACTGTTGAATGTATGTTGGCTAGAAGTGCACGGGAAGTTTGAAACCGCAAACCTGTCACCCGGAACTCTTTATGAAGTTGTATTTGTGGTCAAGCTGAACGCTGCAGATTATGGATGGGAAGATCCGATCAATTTCAGGCTCACTCTCCCTGATGGTACCAGGCAGTGCCGTAAAGTTAATCTGATGCAAACCCCAAGAGGACAATGGGTCGAGATCCCAGTTGGCGAGTTTAGAGCATCGCCTGAGAAATCTGGCGACATGGAGTTTTCGATGTATGAATATGATGGCGGGAAATGGAAGAAAGGGCTTGTTATCAAGGGTGTCGTCCTTCGTCCTAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

289

Amino Acids

32.64

Weight (kDa)

6.47

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	137 - 286	2.5e-46	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AatII	GACGTC	1 cut(s)	504
Acc65I	GGTACC	1 cut(s)	677
AccB1I	GGYRCC	1 cut(s)	677
AciI	CCGC	5 cut(s)	50, 83, 192, 567, 810
AclWI	GGATC	2 cut(s)	638, 730
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	2 cut(s)	479, 679
AgsI	TTSAA	3 cut(s)	329, 529, 563
AhdI	GACNNNNNGTC	1 cut(s)	728
AjnI	CCWGG	2 cut(s)	183, 680
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	3 cut(s)	146, 346, 616
AluI	AGCT	3 cut(s)	146, 346, 616
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	121
Alw44I	GTGCAC	1 cut(s)	548
AlwI	GGATC	2 cut(s)	638, 730
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	27, 159
ApaLI	GTGCAC	1 cut(s)	548
Asp718I	GGTACC	1 cut(s)	677
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	582
AsuHPI	GGTGA	2 cut(s)	142, 570
BaeGI	GKGCMC	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	677
BbsI	GAAGAC	2 cut(s)	462, 496
Bbv12I	GWGCWC	1 cut(s)	552
BccI	CCATC	4 cut(s)	17, 630, 668, 800
BceAI	ACGGC	1 cut(s)	675
BciT130I	CCWGG	2 cut(s)	185, 682
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	2 cut(s)	54, 542
BfmI	CTRYAG	1 cut(s)	624
BglII	AGATCT	1 cut(s)	433
Bme1390I	CCNGG	3 cut(s)	185, 582, 682
BmeRI	GACNNNNNGTC	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	28, 679
BmrFI	CCNGG	3 cut(s)	185, 582, 682
BmrI	ACTGGG	2 cut(s)	18, 734
BmsI	GCATC	4 cut(s)	286, 502, 696, 767
BmuI	ACTGGG	2 cut(s)	18, 734
BpiI	GAAGAC	2 cut(s)	462, 496
BpuMI	CCSGG	1 cut(s)	582
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	126, 168
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bse1I	ACTGG	5 cut(s)	13, 473, 479, 495, 740
BseBI	CCWGG	2 cut(s)	185, 682
BseDI	CCNNGG	2 cut(s)	126, 168
BseGI	GGATG	1 cut(s)	641
BseMII	CTCAG	1 cut(s)	756
BseNI	ACTGG	5 cut(s)	13, 473, 479, 495, 740
BseSI	GKGCMC	1 cut(s)	552
BshFI	GGCC	2 cut(s)	29, 161
BshNI	GGYRCC	1 cut(s)	677
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	29, 161
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	5 cut(s)	151, 433, 643, 648, 735
BspACI	CCGC	5 cut(s)	50, 83, 192, 567, 810
BspANI	GGCC	2 cut(s)	29, 161
BspCNI	CTCAG	1 cut(s)	757
BspLI	GGNNCC	2 cut(s)	28, 679
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	2 cut(s)	638, 730
BspT107I	GGYRCC	1 cut(s)	677
BsrI	ACTGG	5 cut(s)	13, 473, 479, 495, 740
BssECI	CCNNGG	2 cut(s)	126, 168
BssMI	GATC	5 cut(s)	151, 433, 643, 648, 735
BssNI	GRCGYC	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	185, 682
Bst4CI	ACNGT	6 cut(s)	36, 42, 115, 130, 413, 525
BstACI	GRCGYC	1 cut(s)	501
BstDEI	CTNAG	1 cut(s)	765
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	641
BstKTI	GATC	5 cut(s)	154, 436, 646, 651, 738
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	5 cut(s)	151, 433, 643, 648, 735
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 197, 247, 256, 259, 547
BstNI	CCWGG	2 cut(s)	185, 682
BstSCI	CCNGG	3 cut(s)	183, 580, 680
BstSFI	CTRYAG	1 cut(s)	624
BstSLI	GKGCMC	1 cut(s)	552
BstV2I	GAAGAC	2 cut(s)	462, 496
BstX2I	RGATCY	3 cut(s)	433, 643, 735
BstYI	RGATCY	3 cut(s)	433, 643, 735
BsuRI	GGCC	2 cut(s)	29, 161
BtgI	CCRYGG	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	744
BtsCI	GGATG	1 cut(s)	641
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	3 cut(s)	472, 502, 692
CaiI	CAGNNNCTG	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	478, 678
CviAII	CATG	1 cut(s)	781
CviQI	GTAC	2 cut(s)	478, 678
DdeI	CTNAG	1 cut(s)	765
DpnI	GATC	5 cut(s)	153, 435, 645, 650, 737
DpnII	GATC	5 cut(s)	151, 433, 643, 648, 735
DrdI	GACNNNNNNGTC	1 cut(s)	13
DriI	GACNNNNNGTC	1 cut(s)	728
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1105I	GACNNNNNGTC	1 cut(s)	728
Eco57I	CTGAAG	1 cut(s)	474
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	183, 680
FaeI	CATG	1 cut(s)	784
FaiI	YATR	9 cut(s)	273, 419, 426, 535, 594, 633, 782, 798, 804
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	780
FauI	CCCGC	1 cut(s)	803
FbaI	TGATCA	1 cut(s)	151
FokI	GGATG	1 cut(s)	648
FspBI	CTAG	2 cut(s)	54, 542
HaeIII	GGCC	2 cut(s)	29, 161
HapII	CCGG	1 cut(s)	582
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	1 cut(s)	784
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	2 cut(s)	142, 570
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	2 cut(s)	648, 705
Hpy188III	TCNNGA	1 cut(s)	733
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	1 cut(s)	860
HpyCH4III	ACNGT	6 cut(s)	36, 42, 115, 130, 413, 525
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	340, 428, 487, 550, 626, 709
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 197, 247, 256, 259, 547
HpyF3I	CTNAG	1 cut(s)	765
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	1 cut(s)	784
KpnI	GGTACC	1 cut(s)	681
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	151, 433, 643, 648, 735
LmnI	GCTCC	1 cut(s)	351
LweI	GCATC	4 cut(s)	286, 502, 696, 767
MaeI	CTAG	2 cut(s)	54, 542
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	5 cut(s)	15, 36, 464, 497, 576
MalI	GATC	5 cut(s)	153, 435, 645, 650, 737
MboI	GATC	5 cut(s)	151, 433, 643, 648, 735
MboII	GAAGA	4 cut(s)	467, 496, 653, 832
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	3 cut(s)	433, 643, 735
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	2 cut(s)	324, 652
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	5 cut(s)	40, 178, 331, 344, 713
MseI	TTAA	2 cut(s)	365, 699
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	3 cut(s)	185, 582, 682
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	2 cut(s)	185, 682
MwoI	GCNNNNNNNGC	6 cut(s)	58, 197, 247, 256, 259, 547
NciI	CCSGG	1 cut(s)	582
NdeII	GATC	5 cut(s)	151, 433, 643, 648, 735
NlaIII	CATG	1 cut(s)	784
NlaIV	GGNNCC	2 cut(s)	28, 679
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	4 cut(s)	15, 36, 497, 576
Psp6I	CCWGG	2 cut(s)	183, 680
PspGI	CCWGG	2 cut(s)	183, 680
PspN4I	GGNNCC	2 cut(s)	28, 679
PspPI	GGNCC	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	628
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	3 cut(s)	433, 643, 735
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	479, 679
RsaNI	GTAC	2 cut(s)	478, 678
SaqAI	TTAA	2 cut(s)	365, 699
Sau3AI	GATC	5 cut(s)	151, 433, 643, 648, 735
Sau96I	GGNCC	1 cut(s)	27
ScrFI	CCNGG	3 cut(s)	185, 582, 682
SduI	GDGCHC	1 cut(s)	552
SetI	ASST	7 cut(s)	148, 310, 336, 348, 504, 576, 618
SfaNI	GCATC	4 cut(s)	286, 502, 696, 767
SfcI	CTRYAG	1 cut(s)	624
Sse9I	AATT	2 cut(s)	324, 652
SsiI	CCGC	5 cut(s)	50, 83, 192, 567, 810
SspMI	CTAG	2 cut(s)	54, 542
StyD4I	CCNGG	3 cut(s)	183, 580, 680
TaaI	ACNGT	6 cut(s)	36, 42, 115, 130, 413, 525
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	732, 791
TasI	AATT	2 cut(s)	324, 652
TauI	GCSGC	3 cut(s)	52, 86, 194
Tru1I	TTAA	2 cut(s)	365, 699
Tru9I	TTAA	2 cut(s)	365, 699
TscAI	CASTG	3 cut(s)	479, 502, 692
TseFI	GTSAC	4 cut(s)	15, 36, 497, 576
Tsp45I	GTSAC	4 cut(s)	15, 36, 497, 576
TspDTI	ATGAA	3 cut(s)	496, 609, 813
TspRI	CASTG	3 cut(s)	479, 502, 692
VneI	GTGCAC	1 cut(s)	548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723
XspI	CTAG	2 cut(s)	54, 542
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.