Rroxscaffold_1G00058240

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001185
Physical Location & Seq
Reverse (-)
80082835 .. 80084144
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058240.1

Sequence Viewer

Length: 864 bp
ATGGGGACAGGGTGGTCACAAGATGAGGCCTCACAGTCACAGCAGCTGAGTCCTGCAGAAGCAAGTAACAAGGCAGTAGTGGAGAAAGTAACAGAAGCAGCGCCTAGTGGCTCTAAACCCATGGCAAAAGTGGAGAAATCAGCTAGTTTTCAGGCCAAATCTTCAGCCGATCACAACCAGGAGGCCAAAGTAGTGAAAGAAGTCAAGGGAACAGATAAACCGACACTTACACAAGTGAAGCAGCAGCAGCAAACGCTGCAGCAGCTCCCACATAATTACGAAGCTATTGTGAAAGATGCCGACACTCCAATCAACAAGTCACCGGAACATCTGTTTGTACATCTCTATGCTGGAATACTCTTAAACCAAAAGAGGAAGAAGTATTGGGTTGACAAGAAGTCCAACAACTGCTTCATGGTGTATCCAAGGGATCTCACAATCACTTGGGCTGAAGACAATCGTTACTGGCACTGGCCTTCCCTGGAAGAAACAAGTAATGTCTTCATCGATGCAGCTGAACTGTTAAATGTATGCTGGCTTGAAGTTCATGGAAAAATTGATTCCACAAAGCTGTCACCAGGAACTCTATATGAAGTAGTATTTATAGTGATGTTGAAAGCTGCAGCTTATGGATGGAAAGTTCCTGTCAATGTCAGACTCAGTCTCCCAGATGGTAACAAGCAAGAACGTAAAGCTGATCTGAATAAAATCCCTAGAGAACAATGGACAGAGATACCAGTAGGCGAGTTTAGAGCATCAACAGGATTACTTGGGAACATTGAATTTTCGATGTATGAATATGAAGATGGGAAATGGAAGAGTGGACTCCTGATCAAGGGCGTTGCCGTTCGGCCTAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

287

Amino Acids

32.36

Weight (kDa)

8.3

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 136 - 285 6e-45 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 2 cut(s) 147, 471
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 835
AgsI TTSAA 3 cut(s) 542, 616, 782
AhdI GACNNNNNGTC 1 cut(s) 397
AjnI CCWGG 3 cut(s) 177, 480, 577
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AloI GAACNNNNNNTCC 2 cut(s) 624, 656
AluBI AGCT 9 cut(s) 46, 143, 265, 284, 515, 571, 620, 626, 695
AluI AGCT 9 cut(s) 46, 143, 265, 284, 515, 571, 620, 626, 695
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 1 cut(s) 438
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 5 cut(s) 27, 153, 183, 473, 851
ApoI RAATTY 1 cut(s) 782
AspLEI GCGC 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 312, 567
BbsI GAAGAC 2 cut(s) 459, 493
BccI CCATC 3 cut(s) 627, 665, 800
BceAI ACGGC 1 cut(s) 830
BciT130I CCWGG 3 cut(s) 179, 482, 579
BciVI GTATCC 1 cut(s) 432
BclI TGATCA 1 cut(s) 831
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 3 cut(s) 105, 144, 714
BfmI CTRYAG 3 cut(s) 54, 257, 621
BfoI RGCGCY 1 cut(s) 104
BfuI GTATCC 1 cut(s) 432
Bme1390I CCNGG 3 cut(s) 179, 482, 579
BmeRI GACNNNNNGTC 1 cut(s) 397
BmrFI CCNGG 3 cut(s) 179, 482, 579
BmsI GCATC 3 cut(s) 286, 499, 764
BpiI GAAGAC 2 cut(s) 459, 493
Bsa29I ATCGAT 1 cut(s) 507
BsaJI CCNNGG 3 cut(s) 120, 425, 480
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 648, 678
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse1I ACTGG 3 cut(s) 470, 476, 737
BseBI CCWGG 3 cut(s) 179, 482, 579
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 3 cut(s) 120, 425, 480
BseGI GGATG 1 cut(s) 638
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMII CTCAG 2 cut(s) 38, 673
BseNI ACTGG 3 cut(s) 470, 476, 737
BshFI GGCC 5 cut(s) 29, 155, 185, 475, 853
BshVI ATCGAT 1 cut(s) 507
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 835
BsmAI GTCTC 1 cut(s) 668
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 5 cut(s) 29, 155, 185, 475, 853
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 4 cut(s) 169, 430, 697, 831
Bsp19I CCATGG 1 cut(s) 120
BspANI GGCC 5 cut(s) 29, 155, 185, 475, 853
BspCNI CTCAG 2 cut(s) 39, 672
BspDI ATCGAT 1 cut(s) 507
BspMAI CTGCAG 3 cut(s) 58, 261, 625
BspPI GGATC 1 cut(s) 438
BsrGI TGTACA 1 cut(s) 337
BsrI ACTGG 3 cut(s) 470, 476, 737
BssECI CCNNGG 3 cut(s) 120, 425, 480
BssMI GATC 4 cut(s) 169, 430, 697, 831
BssT1I CCWWGG 2 cut(s) 120, 425
Bst2UI CCWGG 3 cut(s) 179, 482, 579
Bst4CI ACNGT 2 cut(s) 36, 522
Bst6I CTCTTC 1 cut(s) 812
BstAPI GCANNNNNTGC 1 cut(s) 256
BstAUI TGTACA 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 536
BstDEI CTNAG 2 cut(s) 47, 659
BstDSI CCRYGG 1 cut(s) 120
BstENI CCTNNNNNAGG 1 cut(s) 833
BstF5I GGATG 1 cut(s) 638
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 4 cut(s) 172, 433, 700, 834
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 4 cut(s) 169, 430, 697, 831
BstMWI GCNNNNNNNGC 4 cut(s) 247, 253, 256, 262
BstNI CCWGG 3 cut(s) 179, 482, 579
BstSCI CCNGG 3 cut(s) 177, 480, 577
BstSFI CTRYAG 3 cut(s) 54, 257, 621
BstV2I GAAGAC 2 cut(s) 459, 493
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
Bsu15I ATCGAT 1 cut(s) 507
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 5 cut(s) 29, 155, 185, 475, 853
BsuTUI ATCGAT 1 cut(s) 507
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 638
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 536
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 103
ClaI ATCGAT 1 cut(s) 507
Csp6I GTAC 1 cut(s) 338
CviAII CATG 3 cut(s) 121, 415, 548
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 47, 659
DpnI GATC 4 cut(s) 171, 432, 699, 833
DpnII GATC 4 cut(s) 169, 430, 697, 831
DrdI GACNNNNNNGTC 1 cut(s) 13
DriI GACNNNNNGTC 1 cut(s) 397
DseDI GACNNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 812
Eam1105I GACNNNNNGTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 812
Eco130I CCWWGG 2 cut(s) 120, 425
Eco147I AGGCCT 1 cut(s) 29
Eco57I CTGAAG 2 cut(s) 147, 471
EcoNI CCTNNNNNAGG 1 cut(s) 833
EcoRII CCWGG 3 cut(s) 177, 480, 577
EcoT14I CCWWGG 2 cut(s) 120, 425
ErhI CCWWGG 2 cut(s) 120, 425
FaeI CATG 3 cut(s) 124, 418, 551
FaqI GGGAC 1 cut(s) 19
FatI CATG 3 cut(s) 120, 414, 547
FbaI TGATCA 1 cut(s) 831
FokI GGATG 1 cut(s) 645
FspBI CTAG 3 cut(s) 105, 144, 714
GlaI GCGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 5 cut(s) 29, 155, 185, 475, 853
HapII CCGG 1 cut(s) 323
HhaI GCGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 124, 418, 551
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 4 cut(s) 49, 560, 657, 825
HpaII CCGG 1 cut(s) 323
HphI GGTGA 2 cut(s) 312, 567
Hpy166II GTNNAC 2 cut(s) 391, 824
Hpy188I TCNGA 2 cut(s) 656, 702
Hpy188III TCNNGA 1 cut(s) 829
Hpy8I GTNNAC 2 cut(s) 391, 824
HpyAV CCTTC 1 cut(s) 486
HpyCH4III ACNGT 2 cut(s) 36, 522
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 4 cut(s) 56, 259, 512, 623
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 253, 256, 262
HpyF3I CTNAG 2 cut(s) 47, 659
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 3 cut(s) 124, 418, 551
HspAI GCGC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 4 cut(s) 169, 430, 697, 831
LmnI GCTCC 1 cut(s) 270
LweI GCATC 3 cut(s) 286, 499, 764
MaeI CTAG 3 cut(s) 105, 144, 714
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 8 cut(s) 15, 36, 65, 88, 318, 461, 573, 674
MalI GATC 4 cut(s) 171, 432, 699, 833
MboI GATC 4 cut(s) 169, 430, 697, 831
MboII GAAGA 7 cut(s) 153, 388, 464, 493, 497, 815, 829
MflI RGATCY 1 cut(s) 430
MluCI AATT 4 cut(s) 274, 555, 782, 859
MlyI GAGTC 3 cut(s) 58, 651, 819
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 4 cut(s) 19, 40, 175, 366
MseI TTAA 2 cut(s) 362, 524
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 46, 515
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 3 cut(s) 179, 482, 579
MvaI CCWGG 3 cut(s) 179, 482, 579
MwoI GCNNNNNNNGC 4 cut(s) 247, 253, 256, 262
NcoI CCATGG 1 cut(s) 120
NdeII GATC 4 cut(s) 169, 430, 697, 831
NlaIII CATG 3 cut(s) 124, 418, 551
NmuCI GTSAC 4 cut(s) 15, 36, 318, 573
PceI AGGCCT 1 cut(s) 29
PfeI GAWTC 1 cut(s) 560
PflFI GACNNNGTC 1 cut(s) 660
PleI GAGTC 3 cut(s) 57, 651, 819
PpsI GAGTC 3 cut(s) 57, 651, 819
Psp6I CCWGG 3 cut(s) 177, 480, 577
PspGI CCWGG 3 cut(s) 177, 480, 577
PstI CTGCAG 3 cut(s) 58, 261, 625
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 430
PsyI GACNNNGTC 1 cut(s) 660
PvuII CAGCTG 2 cut(s) 46, 515
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 2 cut(s) 362, 524
Sau3AI GATC 4 cut(s) 169, 430, 697, 831
SchI GAGTC 3 cut(s) 58, 651, 819
ScrFI CCNGG 3 cut(s) 179, 482, 579
SfaNI GCATC 3 cut(s) 286, 499, 764
SfcI CTRYAG 3 cut(s) 54, 257, 621
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 4 cut(s) 274, 555, 782, 859
SseBI AGGCCT 1 cut(s) 29
SspMI CTAG 3 cut(s) 105, 144, 714
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 177, 480, 577
StyI CCWWGG 2 cut(s) 120, 425
TaaI ACNGT 2 cut(s) 36, 522
TaiI ACGT 1 cut(s) 691
TaqI TCGA 2 cut(s) 507, 788
TasI AATT 4 cut(s) 274, 555, 782, 859
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 2 cut(s) 362, 524
Tru9I TTAA 2 cut(s) 362, 524
TscAI CASTG 1 cut(s) 476
TseFI GTSAC 4 cut(s) 15, 36, 318, 573
Tsp45I GTSAC 4 cut(s) 15, 36, 318, 573
TspDTI ATGAA 6 cut(s) 403, 493, 536, 606, 810, 816
TspRI CASTG 1 cut(s) 476
Tth111I GACNNNGTC 1 cut(s) 660
XagI CCTNNNNNAGG 1 cut(s) 833
XapI RAATTY 1 cut(s) 782
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XspI CTAG 3 cut(s) 105, 144, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.