Rorug05G0055600

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001185
Physical Location & Seq
Reverse (-)
4901013 .. 4901729
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0055600.1

Sequence Viewer

Length: 717 bp
ATGGCGACTTACCACAGTGCCTCACTTTCTTTGTTCATTCTCTTCCTCGCCACCACTCTCACCGGAACCGCCGCCACCTCCACTTCACCCCTCACTGCCTCACCACCACCACCACCTCCACCTCCATTCCAGTCGTCTCCTCCGGTCAAGAGGCTTGAGGACGTCGTCGCCGAGCCACCTCTCGGCTTCGGTGACTTTACAAGCCGGATTCCAAAGATCGCACCCGTGTCTCTCACTGGAAACGACGTGCAGGCCTCAGCGCCGGCGTCACCTCGGCCGTCGCCGCAGGACCTCGATGAGTTCACGGAGGCAGCGATCGACTTCGGGAGGTTTGCACACGTCATCACCGCCGGCGATCATCTCTCGCGCGCGACCGTCTCCCTCTCTGCAAAAGACGCTGTGTCACGCCTCCTGGCCTCAGCGCCGCCTTCTCCTCCATCGTCACTTCCGACATCTCCTCTGGCCACTACAACGTCGCAGCAGAACGTCCAGCACGTCACCGAGGCACCGATCGACTCCGGGAGCTTCGTACAAGTCATTGCTGCCGGGACTCAGCTCTCTCTTCCACAGAGCATGACGGTTTTCCACTCCGAAAACGACGAGGTACCGGCCACAAACGAATTCTTGTCACCGGACCGCGTGGTGCCTCAGCGGCTGACGTTTGCAGATTTGATTCTCTTGGAGACCGGTTCTCGTCTTCCCACTCTCCTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

238

Amino Acids

24.91

Weight (kDa)

4.84

Isoelectric Point (pI)

65.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
Acc65I GGTACC 1 cut(s) 604
AccB1I GGYRCC 3 cut(s) 505, 604, 643
AccII CGCG 4 cut(s) 367, 369, 371, 639
AciI CCGC 7 cut(s) 69, 72, 284, 348, 425, 637, 652
AcoI YGGCCR 3 cut(s) 275, 462, 609
AcsI RAATTY 1 cut(s) 620
AcyI GRCGYC 2 cut(s) 162, 266
AfaI GTAC 2 cut(s) 531, 606
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 337
AgeI ACCGGT 1 cut(s) 686
AhdI GACNNNNNGTC 1 cut(s) 400
AjiI CACGTC 3 cut(s) 247, 340, 496
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 2 cut(s) 525, 556
AluI AGCT 2 cut(s) 525, 556
Alw26I GTCTC 4 cut(s) 141, 234, 382, 677
AlwNI CAGNNNCTG 1 cut(s) 655
AoxI GGCC 5 cut(s) 252, 275, 414, 462, 609
ApeKI GCWGC 3 cut(s) 311, 478, 542
ApoI RAATTY 1 cut(s) 620
AsiGI ACCGGT 1 cut(s) 686
Asp718I GGTACC 1 cut(s) 604
AspLEI GCGC 4 cut(s) 262, 369, 371, 424
AspS9I GGNCC 2 cut(s) 289, 634
AsuC2I CCSGG 2 cut(s) 520, 547
AsuHPI GGTGA 8 cut(s) 52, 78, 93, 203, 261, 337, 490, 621
AvaII GGWCC 2 cut(s) 289, 634
BalI TGGCCA 1 cut(s) 464
BanI GGYRCC 3 cut(s) 505, 604, 643
BbsI GAAGAC 1 cut(s) 689
BbvCI CCTCAGC 3 cut(s) 256, 418, 648
BbvI GCAGC 3 cut(s) 323, 490, 529
BccI CCATC 1 cut(s) 445
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 413
BcnI CCSGG 2 cut(s) 520, 547
BcoDI GTCTC 4 cut(s) 141, 234, 382, 677
BfoI RGCGCY 2 cut(s) 263, 425
BglI GCCNNNNNGGC 1 cut(s) 652
BisI GCNGC 7 cut(s) 72, 284, 312, 425, 479, 543, 653
BlsI GCNGC 7 cut(s) 73, 285, 313, 426, 480, 544, 654
Bme1390I CCNGG 3 cut(s) 413, 520, 547
Bme18I GGWCC 2 cut(s) 289, 634
BmeRI GACNNNNNGTC 1 cut(s) 400
BmgBI CACGTC 3 cut(s) 247, 340, 496
BmgT120I GGNCC 2 cut(s) 289, 634
BmiI GGNNCC 4 cut(s) 67, 507, 606, 645
BmrFI CCNGG 3 cut(s) 413, 520, 547
BpiI GAAGAC 1 cut(s) 689
Bpu10I CCTNAGC 3 cut(s) 256, 418, 648
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 2 cut(s) 520, 547
BsaHI GRCGYC 2 cut(s) 162, 266
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 2 cut(s) 272, 501
BsaWI WCCGGW 4 cut(s) 62, 142, 631, 686
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 4 cut(s) 262, 350, 607, 686
Bse1I ACTGG 2 cut(s) 130, 241
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 272, 501
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 4 cut(s) 270, 432, 566, 662
BseNI ACTGG 2 cut(s) 130, 241
BsePI GCGCGC 1 cut(s) 367
BseRI GAGGAG 3 cut(s) 129, 423, 447
BseX3I CGGCCG 1 cut(s) 275
BseXI GCAGC 3 cut(s) 323, 490, 529
BsgI GTGCAG 1 cut(s) 269
Bsh1236I CGCG 4 cut(s) 367, 369, 371, 639
Bsh1285I CGRYCG 4 cut(s) 278, 318, 375, 513
BshFI GGCC 5 cut(s) 254, 277, 416, 464, 611
BshNI GGYRCC 3 cut(s) 505, 604, 643
BshTI ACCGGT 1 cut(s) 686
BsiEI CGRYCG 4 cut(s) 278, 318, 375, 513
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 4 cut(s) 141, 234, 382, 677
BsmBI CGTCTC 2 cut(s) 141, 382
BsmFI GGGAC 1 cut(s) 562
BsnI GGCC 5 cut(s) 254, 277, 416, 464, 611
Bso31I GGTCTC 1 cut(s) 677
Bsp143I GATC 4 cut(s) 216, 315, 355, 510
BspACI CCGC 7 cut(s) 69, 72, 284, 348, 425, 637, 652
BspANI GGCC 5 cut(s) 254, 277, 416, 464, 611
BspCNI CTCAG 4 cut(s) 269, 431, 565, 661
BspFNI CGCG 4 cut(s) 367, 369, 371, 639
BspLI GGNNCC 4 cut(s) 67, 507, 606, 645
BspT107I GGYRCC 3 cut(s) 505, 604, 643
BspTNI GGTCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 4 cut(s) 262, 350, 607, 686
BsrI ACTGG 2 cut(s) 130, 241
BssAI RCCGGY 4 cut(s) 262, 350, 607, 686
BssECI CCNNGG 2 cut(s) 272, 501
BssHII GCGCGC 1 cut(s) 367
BssMI GATC 4 cut(s) 216, 315, 355, 510
BssNI GRCGYC 2 cut(s) 162, 266
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 17, 376, 580
Bst6I CTCTTC 2 cut(s) 47, 567
BstACI GRCGYC 2 cut(s) 162, 266
BstC8I GCNNGC 4 cut(s) 252, 264, 352, 369
BstDEI CTNAG 4 cut(s) 256, 418, 552, 648
BstFNI CGCG 4 cut(s) 367, 369, 371, 639
BstH2I RGCGCY 2 cut(s) 263, 425
BstHHI GCGC 4 cut(s) 262, 369, 371, 424
BstKTI GATC 4 cut(s) 219, 318, 358, 513
BstMAI GTCTC 4 cut(s) 141, 234, 382, 677
BstMBI GATC 4 cut(s) 216, 315, 355, 510
BstMCI CGRYCG 4 cut(s) 278, 318, 375, 513
BstMWI GCNNNNNNNGC 3 cut(s) 283, 395, 652
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 3 cut(s) 411, 518, 545
BstUI CGCG 4 cut(s) 367, 369, 371, 639
BstV1I GCAGC 3 cut(s) 323, 490, 529
BstV2I GAAGAC 1 cut(s) 689
BstZI CGGCCG 1 cut(s) 275
BsuRI GGCC 5 cut(s) 254, 277, 416, 464, 611
BtrI CACGTC 3 cut(s) 247, 340, 496
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 3 cut(s) 22, 93, 234
Cac8I GCNNGC 4 cut(s) 252, 264, 352, 369
CaiI CAGNNNCTG 1 cut(s) 655
CfoI GCGC 4 cut(s) 262, 369, 371, 424
Cfr10I RCCGGY 4 cut(s) 262, 350, 607, 686
Cfr13I GGNCC 2 cut(s) 289, 634
CpoI CGGWCCG 1 cut(s) 634
CseI GACGC 2 cut(s) 255, 404
Csp6I GTAC 2 cut(s) 530, 605
CspAI ACCGGT 1 cut(s) 686
CspI CGGWCCG 1 cut(s) 634
CviAII CATG 1 cut(s) 574
CviQI GTAC 2 cut(s) 530, 605
DdeI CTNAG 4 cut(s) 256, 418, 552, 648
DpnI GATC 4 cut(s) 218, 317, 357, 512
DpnII GATC 4 cut(s) 216, 315, 355, 510
DriI GACNNNNNGTC 1 cut(s) 400
EaeI YGGCCR 3 cut(s) 275, 462, 609
EagI CGGCCG 1 cut(s) 275
Eam1104I CTCTTC 2 cut(s) 47, 567
Eam1105I GACNNNNNGTC 1 cut(s) 400
EarI CTCTTC 2 cut(s) 47, 567
EclXI CGGCCG 1 cut(s) 275
Eco147I AGGCCT 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 677
Eco47I GGWCC 2 cut(s) 289, 634
Eco52I CGGCCG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 411
Esp3I CGTCTC 2 cut(s) 141, 382
FaeI CATG 1 cut(s) 577
FaiI YATR 1 cut(s) 575
FaqI GGGAC 1 cut(s) 562
FatI CATG 1 cut(s) 573
Fnu4HI GCNGC 7 cut(s) 72, 284, 312, 425, 479, 543, 653
Fsp4HI GCNGC 7 cut(s) 72, 284, 312, 425, 479, 543, 653
GlaI GCGC 4 cut(s) 261, 368, 370, 423
GluI GCNGC 7 cut(s) 72, 284, 312, 425, 479, 543, 653
HaeII RGCGCY 2 cut(s) 263, 425
HaeIII GGCC 5 cut(s) 254, 277, 416, 464, 611
HgaI GACGC 2 cut(s) 255, 404
HhaI GCGC 4 cut(s) 262, 369, 371, 424
Hin1I GRCGYC 2 cut(s) 162, 266
Hin1II CATG 1 cut(s) 577
Hin6I GCGC 4 cut(s) 260, 367, 369, 422
HinP1I GCGC 4 cut(s) 260, 367, 369, 422
HinfI GANTC 4 cut(s) 208, 515, 550, 673
HphI GGTGA 8 cut(s) 52, 78, 93, 203, 261, 337, 490, 621
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 2 cut(s) 450, 592
Hpy188III TCNNGA 2 cut(s) 148, 325
Hpy8I GTNNAC 1 cut(s) 303
Hpy99I CGWCG 6 cut(s) 167, 170, 248, 283, 478, 602
HpyAV CCTTC 1 cut(s) 438
HpyCH4III ACNGT 3 cut(s) 17, 376, 580
HpyCH4IV ACGT 7 cut(s) 162, 246, 339, 473, 486, 495, 659
HpyCH4V TGCA 4 cut(s) 250, 335, 389, 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 395, 652
HpyF3I CTNAG 4 cut(s) 256, 418, 552, 648
HpySE526I ACGT 7 cut(s) 162, 246, 339, 473, 486, 495, 659
Hsp92I GRCGYC 2 cut(s) 162, 266
Hsp92II CATG 1 cut(s) 577
HspAI GCGC 4 cut(s) 260, 367, 369, 422
KpnI GGTACC 1 cut(s) 608
KroI GCCGGC 2 cut(s) 262, 350
KroNI GCCGGC 2 cut(s) 264, 352
Kzo9I GATC 4 cut(s) 216, 315, 355, 510
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 3 cut(s) 323, 490, 529
MaeII ACGT 7 cut(s) 162, 246, 339, 473, 486, 495, 659
MaeIII GTNAC 6 cut(s) 191, 267, 402, 441, 496, 627
MalI GATC 4 cut(s) 218, 317, 357, 512
MauBI CGCGCGCG 1 cut(s) 367
MboI GATC 4 cut(s) 216, 315, 355, 510
MboII GAAGA 3 cut(s) 34, 554, 689
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 1 cut(s) 620
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 2 cut(s) 509, 544
MmeI TCCRAC 1 cut(s) 473
Mox20I TGGCCA 1 cut(s) 464
MreI CGCCGGCG 2 cut(s) 262, 350
MroNI GCCGGC 2 cut(s) 262, 350
MscI TGGCCA 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 652
MspR9I CCNGG 3 cut(s) 413, 520, 547
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 4 cut(s) 367, 369, 371, 639
MwoI GCNNNNNNNGC 3 cut(s) 283, 395, 652
NaeI GCCGGC 2 cut(s) 264, 352
NciI CCSGG 2 cut(s) 520, 547
NdeII GATC 4 cut(s) 216, 315, 355, 510
NgoMIV GCCGGC 2 cut(s) 262, 350
NlaIII CATG 1 cut(s) 577
NlaIV GGNNCC 4 cut(s) 67, 507, 606, 645
NmeAIII GCCGAG 3 cut(s) 162, 196, 253
NmuCI GTSAC 6 cut(s) 191, 267, 402, 441, 496, 627
PauI GCGCGC 1 cut(s) 367
PceI AGGCCT 1 cut(s) 254
PcsI WCGNNNNNNNCGW 4 cut(s) 168, 311, 446, 492
PdiI GCCGGC 2 cut(s) 264, 352
PfeI GAWTC 2 cut(s) 208, 673
PflFI GACNNNGTC 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 518
PinAI ACCGGT 1 cut(s) 686
PkrI GCNGC 7 cut(s) 73, 285, 313, 426, 480, 544, 654
Ple19I CGATCG 2 cut(s) 318, 513
PleI GAGTC 2 cut(s) 509, 544
PpsI GAGTC 2 cut(s) 509, 544
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 4 cut(s) 67, 507, 606, 645
PspPI GGNCC 2 cut(s) 289, 634
PspPPI RGGWCCY 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 655
PsyI GACNNNGTC 1 cut(s) 164
PteI GCGCGC 1 cut(s) 367
PvuI CGATCG 2 cut(s) 318, 513
RsaI GTAC 2 cut(s) 531, 606
RsaNI GTAC 2 cut(s) 530, 605
Rsr2I CGGWCCG 1 cut(s) 634
RsrII CGGWCCG 1 cut(s) 634
SatI GCNGC 7 cut(s) 72, 284, 312, 425, 479, 543, 653
Sau3AI GATC 4 cut(s) 216, 315, 355, 510
Sau96I GGNCC 2 cut(s) 289, 634
SchI GAGTC 2 cut(s) 509, 544
ScrFI CCNGG 3 cut(s) 413, 520, 547
SgrAI CRCCGGYG 2 cut(s) 262, 350
SinI GGWCC 2 cut(s) 289, 634
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 620
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 7 cut(s) 69, 72, 284, 348, 425, 637, 652
StuI AGGCCT 1 cut(s) 254
StyD4I CCNGG 3 cut(s) 411, 518, 545
TaaI ACNGT 3 cut(s) 17, 376, 580
TaiI ACGT 7 cut(s) 165, 249, 342, 476, 489, 498, 662
TaqI TCGA 3 cut(s) 294, 318, 513
TasI AATT 1 cut(s) 620
TauI GCSGC 4 cut(s) 74, 286, 427, 655
TfiI GAWTC 2 cut(s) 208, 673
TscAI CASTG 3 cut(s) 22, 100, 241
TseFI GTSAC 6 cut(s) 191, 267, 402, 441, 496, 627
TseI GCWGC 3 cut(s) 311, 478, 542
Tsp45I GTSAC 6 cut(s) 191, 267, 402, 441, 496, 627
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 3 cut(s) 22, 100, 241
Tth111I GACNNNGTC 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 289, 634
XapI RAATTY 1 cut(s) 620
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.