Rh1CG152500

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001185
Physical Location & Seq
Reverse (-)
33843952 .. 33845964
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG152500.1

Sequence Viewer

Length: 813 bp
ATGGGGGAAGTAGTGTCCTCTCAACGAAGAACAGAGCCACAGCAGTGGAGTCGTCGACAAGTAAGGCGGCAGGAGGGGCAGCAGGTGCGGCAGGTGCGGCAGGTGCGGCAGGTGCGGCAGCAGGAGCCGCAGCAGGTGCCGCGGCAGGTGCCGCAGGAGCGCTTACATAATTTCCAAGCTATTTGGAAAGATGCCGACATTTCAATATCAGATCGGCTTTCGGACGTGTGGGAACATCTCCAAGATGAAAATCATGGAATACTCTTAAACCAAAAGAAGAAGAAGTATTGGGTTGACAAGGAGTTGAAAAACTGCTTCATGGTGTATCCAAGGGCTCTCATAATCACTTGGGCTGATTCGGCTAAAGACAATCGTTACTGGCACTGGACTTCCCTGGAAGACGGTAAGGTCTTCATCGATGCAGCTGAACTGCTAAATGTATGCTGGCTTGATGTTCAAGGAAAAATTGATTCCACAATGCTGTCACCAGGAACTCTATATGAAGTAGTATTTATAGTGAAGTTGAAACAAGAAGCTTATGGATGGAGAGTTCGTGTCAATGTCAGACTCACTCTCCCAGATGGTAGCAATCAGCAAGAACCTAAAGCTGTTGATCTGAATAAAATCCCAAGAAAAGAATGGAGAGAGATACCTGTAGGTGAGTTTACAGCATCACCAGGATTGCTTGGGAACATTGAATTTTCGATGTATGAACATGAAAGTGGGCAATGGAAGAGTGGACTTCTGATCAAGGGCGTTGCCGTTCGGCCTAAAAACAAAGAGGGAAAAACTTCGCTTATGAGCGGAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

270

Amino Acids

31.49

Weight (kDa)

9.33

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 103 - 257 8.9e-43 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 6 cut(s) 73, 82, 91, 100, 124, 136
AasI GACNNNNNNGTC 1 cut(s) 407
Acc36I ACCTGC 6 cut(s) 73, 82, 91, 100, 124, 136
AccB1I GGYRCC 2 cut(s) 136, 148
AccBSI CCGCTC 1 cut(s) 804
AccI GTMKAC 1 cut(s) 55
AccII CGCG 1 cut(s) 142
AcsI RAATTY 1 cut(s) 698
AfeI AGCGCT 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 5 cut(s) 204, 307, 458, 526, 698
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 3 cut(s) 393, 487, 676
AleI CACNNNNGTG 1 cut(s) 43
AloI GAACNNNNNNTCC 2 cut(s) 534, 566
AluBI AGCT 4 cut(s) 179, 425, 536, 608
AluI AGCT 4 cut(s) 179, 425, 536, 608
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 1 cut(s) 767
ApeKI GCWGC 4 cut(s) 79, 118, 130, 422
ApoI RAATTY 1 cut(s) 698
Asp700I GAANNNNTTC 1 cut(s) 790
AspLEI GCGC 1 cut(s) 162
AsuHPI GGTGA 3 cut(s) 477, 666, 671
BanI GGYRCC 2 cut(s) 136, 148
BanII GRGCYC 1 cut(s) 337
BbsI GAAGAC 2 cut(s) 403, 405
BbvI GCAGC 4 cut(s) 91, 130, 142, 434
BccI CCATC 2 cut(s) 537, 575
BceAI ACGGC 1 cut(s) 746
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 3 cut(s) 395, 489, 678
BciVI GTATCC 1 cut(s) 336
BclI TGATCA 1 cut(s) 747
BfmI CTRYAG 1 cut(s) 654
BfoI RGCGCY 1 cut(s) 163
BfuAI ACCTGC 6 cut(s) 73, 82, 91, 100, 124, 136
BfuI GTATCC 1 cut(s) 336
Bme1390I CCNGG 3 cut(s) 395, 489, 678
BmgBI CACGTC 1 cut(s) 226
BmiI GGNNCC 3 cut(s) 126, 138, 150
BmrFI CCNGG 3 cut(s) 395, 489, 678
BmsI GCATC 3 cut(s) 181, 409, 680
BpiI GAAGAC 2 cut(s) 403, 405
Bsa29I ATCGAT 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 140, 329, 393
BsaXI ACNNNNNCTCC 4 cut(s) 538, 558, 568, 588
Bse1I ACTGG 2 cut(s) 383, 389
Bse3DI GCAATG 1 cut(s) 734
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 3 cut(s) 395, 489, 678
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 3 cut(s) 140, 329, 393
BseGI GGATG 1 cut(s) 548
BseJI GATNNNNATC 1 cut(s) 249
BseMI GCAATG 1 cut(s) 734
BseNI ACTGG 2 cut(s) 383, 389
BseXI GCAGC 4 cut(s) 91, 130, 142, 434
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 769
BshNI GGYRCC 2 cut(s) 136, 148
BshVI ATCGAT 1 cut(s) 417
BsnI GGCC 1 cut(s) 769
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 3 cut(s) 211, 613, 747
BspANI GGCC 1 cut(s) 769
BspDI ATCGAT 1 cut(s) 417
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 126, 138, 150
BspMI ACCTGC 6 cut(s) 73, 82, 91, 100, 124, 136
BspT107I GGYRCC 2 cut(s) 136, 148
BsrBI CCGCTC 1 cut(s) 804
BsrDI GCAATG 1 cut(s) 734
BsrI ACTGG 2 cut(s) 383, 389
BssECI CCNNGG 3 cut(s) 140, 329, 393
BssMI GATC 3 cut(s) 211, 613, 747
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 3 cut(s) 395, 489, 678
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 1 cut(s) 728
BstAPI GCANNNNNTGC 2 cut(s) 85, 136
BstC8I GCNNGC 1 cut(s) 446
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 548
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 3 cut(s) 214, 616, 750
BstMBI GATC 3 cut(s) 211, 613, 747
BstNI CCWGG 3 cut(s) 395, 489, 678
BstSCI CCNGG 3 cut(s) 393, 487, 676
BstSFI CTRYAG 1 cut(s) 654
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 4 cut(s) 91, 130, 142, 434
BstV2I GAAGAC 2 cut(s) 403, 405
BstXI CCANNNNNNTGG 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 417
BsuI GTATCC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 769
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 140
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 548
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 2 cut(s) 50, 382
BveI ACCTGC 6 cut(s) 73, 82, 91, 100, 124, 136
Cac8I GCNNGC 1 cut(s) 446
CfoI GCGC 1 cut(s) 162
Cfr42I CCGCGG 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 417
CviAII CATG 3 cut(s) 254, 319, 716
DpnI GATC 3 cut(s) 213, 615, 749
DpnII GATC 3 cut(s) 211, 613, 747
DrdI GACNNNNNNGTC 1 cut(s) 407
DseDI GACNNNNNNGTC 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 728
EarI CTCTTC 1 cut(s) 728
Eco130I CCWWGG 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 337
Eco47III AGCGCT 1 cut(s) 161
EcoRII CCWGG 3 cut(s) 393, 487, 676
EcoT14I CCWWGG 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 3 cut(s) 257, 322, 719
FatI CATG 3 cut(s) 253, 318, 715
FbaI TGATCA 1 cut(s) 747
FblI GTMKAC 1 cut(s) 55
FokI GGATG 1 cut(s) 555
FriOI GRGCYC 1 cut(s) 337
GlaI GCGC 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 769
HhaI GCGC 1 cut(s) 162
Hin1II CATG 3 cut(s) 257, 322, 719
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 2 cut(s) 56, 295
HindII GTYRAC 2 cut(s) 56, 295
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 4 cut(s) 49, 356, 470, 567
HphI GGTGA 3 cut(s) 477, 666, 671
Hpy166II GTNNAC 4 cut(s) 56, 295, 666, 740
Hpy188I TCNGA 5 cut(s) 211, 223, 566, 618, 747
Hpy8I GTNNAC 4 cut(s) 56, 295, 666, 740
Hpy99I CGWCG 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 422
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 257, 322, 719
HspAI GCGC 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 747
KspI CCGCGG 1 cut(s) 143
Kzo9I GATC 3 cut(s) 211, 613, 747
LmnI GCTCC 2 cut(s) 124, 157
Lsp1109I GCAGC 4 cut(s) 91, 130, 142, 434
LweI GCATC 3 cut(s) 181, 409, 680
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 374, 483
MalI GATC 3 cut(s) 213, 615, 749
MbiI CCGCTC 1 cut(s) 804
MboI GATC 3 cut(s) 211, 613, 747
MboII GAAGA 6 cut(s) 39, 289, 292, 403, 410, 745
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 3 cut(s) 169, 465, 698
MlyI GAGTC 2 cut(s) 58, 561
MnlI CCTC 4 cut(s) 28, 67, 775, 800
MroXI GAANNNNTTC 1 cut(s) 790
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 2 cut(s) 43, 720
MspA1I CMGCKG 2 cut(s) 142, 425
MspR9I CCNGG 3 cut(s) 395, 489, 678
MvaI CCWGG 3 cut(s) 395, 489, 678
MvnI CGCG 1 cut(s) 142
NdeII GATC 3 cut(s) 211, 613, 747
NlaIII CATG 3 cut(s) 257, 322, 719
NlaIV GGNNCC 3 cut(s) 126, 138, 150
NmuCI GTSAC 1 cut(s) 483
OliI CACNNNNGTG 1 cut(s) 43
PaqCI CACCTGC 6 cut(s) 73, 82, 91, 100, 124, 136
PdmI GAANNNNTTC 1 cut(s) 790
PfeI GAWTC 2 cut(s) 356, 470
PleI GAGTC 2 cut(s) 57, 561
PpsI GAGTC 2 cut(s) 57, 561
Psp6I CCWGG 3 cut(s) 393, 487, 676
PspGI CCWGG 3 cut(s) 393, 487, 676
PspN4I GGNNCC 3 cut(s) 126, 138, 150
PvuII CAGCTG 1 cut(s) 425
RseI CAYNNNNRTG 2 cut(s) 43, 720
SacII CCGCGG 1 cut(s) 143
SalI GTCGAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 266
Sau3AI GATC 3 cut(s) 211, 613, 747
SchI GAGTC 2 cut(s) 58, 561
ScrFI CCNGG 3 cut(s) 395, 489, 678
SduI GDGCHC 1 cut(s) 337
SfaNI GCATC 3 cut(s) 181, 409, 680
SfcI CTRYAG 1 cut(s) 654
Sfr303I CCGCGG 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 43, 720
Sse9I AATT 3 cut(s) 169, 465, 698
StyD4I CCNGG 3 cut(s) 393, 487, 676
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 1 cut(s) 228
TaqI TCGA 3 cut(s) 55, 417, 704
TasI AATT 3 cut(s) 169, 465, 698
TauI GCSGC 9 cut(s) 70, 91, 100, 109, 118, 130, 142, 145, 154
TfiI GAWTC 2 cut(s) 356, 470
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 2 cut(s) 50, 389
TseFI GTSAC 1 cut(s) 483
TseI GCWGC 4 cut(s) 79, 118, 130, 422
Tsp45I GTSAC 1 cut(s) 483
TspDTI ATGAA 6 cut(s) 261, 307, 403, 516, 726, 732
TspRI CASTG 2 cut(s) 50, 389
XapI RAATTY 1 cut(s) 698
XcmI CCANNNNNNNNNTGG 1 cut(s) 636
XmiI GTMKAC 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.