Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8241819.1

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 557

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8241819.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 412 bp

atggtgtatccaagggatctcacaatcacttgggctgaagacaatcgttactggcactggccttccctggaagaaacaagtaatgtcttcatcgatgcagctgaactgttaaatgtatgctggcttgaagttcatggaaaaattgattccacaaagctgtcaccaggaactctatatgaagtagtatttatagtgatgttgaaagctgcagcttatggatggaaagttcctgtcaatgtcagactcagtctcccagatggtaacaagcaagaacgtaaagctgatctgaataaaatccctagagaacaatggacagagataccagtaggcgagtttagagcatcaacaggattacttgggaacattgaattttcgatgtatgaatatgaagatgggaaatggaagagtggac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

137

Amino Acids

15.81

Weight (kDa)

5.06

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	128, 202, 368
AjnI	CCWGG	2 cut(s)	66, 163
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
AluBI	AGCT	5 cut(s)	101, 157, 206, 212, 281
AluI	AGCT	5 cut(s)	101, 157, 206, 212, 281
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	98, 206, 209
ApoI	RAATTY	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	45, 79
BbvI	GCAGC	3 cut(s)	110, 193, 221
BccI	CCATC	3 cut(s)	213, 251, 386
BciT130I	CCWGG	2 cut(s)	68, 165
BciVI	GTATCC	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	3 cut(s)	99, 207, 210
BlsI	GCNGC	3 cut(s)	100, 208, 211
Bme1390I	CCNGG	2 cut(s)	68, 165
BmrFI	CCNGG	2 cut(s)	68, 165
BmsI	GCATC	2 cut(s)	85, 350
BpiI	GAAGAC	2 cut(s)	45, 79
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	11, 66
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bse1I	ACTGG	3 cut(s)	56, 62, 323
BseBI	CCWGG	2 cut(s)	68, 165
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	11, 66
BseGI	GGATG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	3 cut(s)	56, 62, 323
BseXI	GCAGC	3 cut(s)	110, 193, 221
BshFI	GGCC	1 cut(s)	61
BshVI	ATCGAT	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	16, 283
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	258
BspDI	ATCGAT	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	24
BsrI	ACTGG	3 cut(s)	56, 62, 323
BssECI	CCNNGG	2 cut(s)	11, 66
BssMI	GATC	2 cut(s)	16, 283
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	68, 165
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	19, 286
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	16, 283
BstNI	CCWGG	2 cut(s)	68, 165
BstSCI	CCNGG	2 cut(s)	66, 163
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	110, 193, 221
BstV2I	GAAGAC	2 cut(s)	45, 79
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	61
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	93
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	8 cut(s)	35, 61, 101, 124, 157, 206, 212, 281
CviKI_1	RGCY	8 cut(s)	35, 61, 101, 124, 157, 206, 212, 281
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	2 cut(s)	18, 285
DpnII	GATC	2 cut(s)	16, 283
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	66, 163
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	1 cut(s)	137
FaiI	YATR	8 cut(s)	118, 135, 175, 177, 191, 216, 381, 387
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	99, 207, 210
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	99, 207, 210
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	3 cut(s)	99, 207, 210
HaeIII	GGCC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	2 cut(s)	146, 243
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	2 cut(s)	242, 288
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	98, 209
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	2 cut(s)	16, 283
Lsp1109I	GCAGC	3 cut(s)	110, 193, 221
LweI	GCATC	2 cut(s)	85, 350
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	3 cut(s)	47, 159, 260
MalI	GATC	2 cut(s)	18, 285
MboI	GATC	2 cut(s)	16, 283
MboII	GAAGA	4 cut(s)	50, 79, 83, 401
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	2 cut(s)	141, 368
MlyI	GAGTC	1 cut(s)	237
MseI	TTAA	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	68, 165
MvaI	CCWGG	2 cut(s)	68, 165
NdeII	GATC	2 cut(s)	16, 283
NlaIII	CATG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	100, 208, 211
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	66, 163
PspGI	CCWGG	2 cut(s)	66, 163
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	3 cut(s)	99, 207, 210
Sau3AI	GATC	2 cut(s)	16, 283
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	68, 165
SetI	ASST	6 cut(s)	103, 159, 208, 214, 277, 283
SfaNI	GCATC	2 cut(s)	85, 350
SfcI	CTRYAG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	141, 368
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	66, 163
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	93, 374
TasI	AATT	2 cut(s)	141, 368
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	3 cut(s)	98, 206, 209
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	5 cut(s)	79, 122, 192, 396, 402
TspRI	CASTG	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	368
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.