Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

47188832 .. 47190233

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1355700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTGCGGGGACTTGTGGAAATGAATGGCTTAGCCCTGTCTTCCTGTATATATAGTGAAAACATGATTGAAGAACTGCACGAAGAGATGGCTGCGCAAGGGGCTCCCCCAGCAGAAAAGCCACATCAGTATCAAGAGATTATGGACAACTTAATCAAACCTAAAGACAGGCCCGCACCTGATAAACTCCTTTCGGAGCACCAATATACAGATTATTTCGACGCAGAGAAAAAGAAAAGTTATTGGGTTGATGAGGATGGCAAGAACTGTTTTATGTTGTATGCAAGAGATCTCACAATCATTTGGAGTGGAGACCGTCGTTACTGGCGCTGGTACCCTTTGAAAGTAACCAGAGATGCCTCCGTTGACGTTGCTGAACTGTTAGATGTATGCTGGCTAGATGTGAATGGGGCTTTTGACACCAAATACCTGACACCCGATACTGTGTATGAAGTTTCATTTGTGATCAGGCTCAAGGACCCAAATTACGGATGGGAAGATAATGTCAACTTCAGCCTCACTCTCCCTGGGAACGACAAGAAAGCCTGTACACAGGATCTGAGGAAATTACCAAGAGGAAGTTGGAGTATTATCCGAGTTGGTGAATTTAAACCGCCTACGCCATCTGGCCGCATGGATTTTACGCTCCGTCAAACTGTTCCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

223

Amino Acids

25.78

Weight (kDa)

5.22

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	88 - 219	1.1e-31	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	96
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	333
AciI	CCGC	4 cut(s)	7, 174, 614, 631
AclWI	GGATC	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	496
AfaI	GTAC	2 cut(s)	335, 550
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	2 cut(s)	71, 343
AjnI	CCWGG	1 cut(s)	526
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	564
AlwNI	CAGNNNCTG	1 cut(s)	559
AoxI	GGCC	2 cut(s)	170, 628
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	605
Asp718I	GGTACC	1 cut(s)	333
AspLEI	GCGC	2 cut(s)	97, 330
AspS9I	GGNCC	2 cut(s)	171, 478
AsuHPI	GGTGA	1 cut(s)	614
AvaII	GGWCC	1 cut(s)	478
BaeI	ACNNNNGTAYC	2 cut(s)	113, 146
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	4 cut(s)	82, 251, 486, 631
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	1 cut(s)	398
BfoI	RGCGCY	1 cut(s)	331
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	2 cut(s)	93, 631
BlpI	GCTNAGC	1 cut(s)	31
BlsI	GCNGC	2 cut(s)	94, 632
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	171, 478
BmiI	GGNNCC	3 cut(s)	105, 335, 480
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	33
Bpu1102I	GCTNAGC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	526, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	526, 527
BseGI	GGATG	2 cut(s)	262, 497
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	172, 630
BshNI	GGYRCC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	172, 630
Bso31I	GGTCTC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	106, 201
Bsp1407I	TGTACA	1 cut(s)	548
Bsp143I	GATC	3 cut(s)	289, 465, 556
Bsp1720I	GCTNAGC	1 cut(s)	31
BspACI	CCGC	4 cut(s)	7, 174, 614, 631
BspANI	GGCC	2 cut(s)	172, 630
BspCNI	CTCAG	1 cut(s)	552
BspLI	GGNNCC	3 cut(s)	105, 335, 480
BspPI	GGATC	1 cut(s)	564
BspT107I	GGYRCC	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	306
BsrGI	TGTACA	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	526, 527
BssMI	GATC	3 cut(s)	289, 465, 556
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	5 cut(s)	269, 317, 381, 445, 658
Bst6I	CTCTTC	1 cut(s)	78
BstAUI	TGTACA	1 cut(s)	548
BstC8I	GCNNGC	2 cut(s)	174, 395
BstDEI	CTNAG	2 cut(s)	31, 560
BstF5I	GGATG	2 cut(s)	262, 497
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	97, 330
BstKTI	GATC	3 cut(s)	292, 468, 559
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	3 cut(s)	289, 465, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 110
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	2 cut(s)	289, 556
BstYI	RGATCY	2 cut(s)	289, 556
BsuRI	GGCC	2 cut(s)	172, 630
BtsCI	GGATG	2 cut(s)	262, 497
Cac8I	GCNNGC	2 cut(s)	174, 395
CaiI	CAGNNNCTG	1 cut(s)	559
CfoI	GCGC	2 cut(s)	97, 330
Cfr13I	GGNCC	2 cut(s)	171, 478
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	334, 549
CviAII	CATG	2 cut(s)	64, 634
CviQI	GTAC	2 cut(s)	334, 549
DdeI	CTNAG	2 cut(s)	31, 560
DpnI	GATC	3 cut(s)	291, 467, 558
DpnII	GATC	3 cut(s)	289, 465, 556
DraI	TTTAAA	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	106
FaeI	CATG	2 cut(s)	67, 637
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	63, 633
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	2 cut(s)	93, 631
FokI	GGATG	2 cut(s)	269, 504
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	2 cut(s)	93, 631
FspBI	CTAG	1 cut(s)	398
FspI	TGCGCA	1 cut(s)	96
GlaI	GCGC	2 cut(s)	96, 329
GluI	GCNGC	2 cut(s)	93, 631
GsaI	CCCAGC	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	172, 630
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	2 cut(s)	97, 330
Hin1II	CATG	2 cut(s)	67, 637
Hin6I	GCGC	2 cut(s)	95, 328
HinP1I	GCGC	2 cut(s)	95, 328
HincII	GTYRAC	2 cut(s)	367, 508
HindII	GTYRAC	2 cut(s)	367, 508
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	3 cut(s)	367, 508, 551
Hpy188I	TCNGA	4 cut(s)	196, 561, 596, 663
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	3 cut(s)	367, 508, 551
Hpy99I	CGWCG	2 cut(s)	224, 321
HpyCH4III	ACNGT	5 cut(s)	269, 317, 381, 445, 658
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	79, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 110
HpyF3I	CTNAG	2 cut(s)	31, 560
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	67, 637
HspAI	GCGC	2 cut(s)	95, 328
KpnI	GGTACC	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	3 cut(s)	289, 465, 556
LmnI	GCTCC	3 cut(s)	109, 196, 651
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	320, 346
MalI	GATC	3 cut(s)	291, 467, 558
MboI	GATC	3 cut(s)	289, 465, 556
MboII	GAAGA	4 cut(s)	33, 83, 95, 509
MflI	RGATCY	2 cut(s)	289, 556
MhlI	GDGCHC	2 cut(s)	106, 201
MluCI	AATT	3 cut(s)	484, 566, 605
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	5 cut(s)	247, 370, 527, 555, 569
MseI	TTAA	2 cut(s)	152, 609
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	101, 110
NdeII	GATC	3 cut(s)	289, 465, 556
NlaIII	CATG	2 cut(s)	67, 637
NlaIV	GGNNCC	3 cut(s)	105, 335, 480
NsbI	TGCGCA	1 cut(s)	96
PasI	CCCWGGG	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	94, 632
PpuMI	RGGWCCY	1 cut(s)	478
Psp5II	RGGWCCY	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	105, 335, 480
PspPI	GGNCC	2 cut(s)	171, 478
PspPPI	RGGWCCY	1 cut(s)	478
PstNI	CAGNNNCTG	1 cut(s)	559
PsuI	RGATCY	2 cut(s)	289, 556
RsaI	GTAC	2 cut(s)	335, 550
RsaNI	GTAC	2 cut(s)	334, 549
SaqAI	TTAA	2 cut(s)	152, 609
SatI	GCNGC	2 cut(s)	93, 631
Sau3AI	GATC	3 cut(s)	289, 465, 556
Sau96I	GGNCC	2 cut(s)	171, 478
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	2 cut(s)	106, 201
SetI	ASST	4 cut(s)	163, 181, 372, 432
SfaNI	GCATC	1 cut(s)	346
SinI	GGWCC	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	484, 566, 605
SsiI	CCGC	4 cut(s)	7, 174, 614, 631
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	5 cut(s)	269, 317, 381, 445, 658
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	219
TasI	AATT	3 cut(s)	484, 566, 605
TatI	WGTACW	1 cut(s)	548
TauI	GCSGC	1 cut(s)	633
Tru1I	TTAA	2 cut(s)	152, 609
Tru9I	TTAA	2 cut(s)	152, 609
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	38, 447, 465
TspGWI	ACGGA	3 cut(s)	352, 504, 638
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	2 cut(s)	489, 579
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.