Rorug05G0055500

Protein PHLOEM PROTEIN 2-LIKE

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
4896794 .. 4897201
408 bp
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UTR
Exon/CDS
Intron
Rorug05G0055500.1

Sequence Viewer

Length: 408 bp
ATGGCTGAGATGCTTCTTTGCACAGTAATACTCACACAGATAGCGCTGCTACTGGCACTTTTGTTTGACTCGATTCCCTTCAGAACCCCGGTGATGATATTCCTCGGCGGCGTTGGTCTTGGCTACGCCGGCGACGCGCTTCACACGATTACTTTCGAAGACGGAATTCCCAGTCTAAAAGCCATTACTCTCTATATCTGCTCCATATTTCTTGCTGGTGTGATAGAAAGACTGAGTCATCGTATGAATGAGGTCGAGGTATGGAAAAAAATGGTGTCAGAGTTTGAGTTTAACCTAGCCTTTGAGCGAGACATGGAAGAAAGAGTCGCTCAACAGAAGGCAACGCTCCAACGACTTGATGCAATACGACTTGACAGACAAAACAGATTGCAGAACCTCCATCGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.42

Weight (kDa)

5.9

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AciI CCGC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 64
AfeI AGCGCT 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 303
Aor51HI AGCGCT 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 165
AspLEI GCGC 2 cut(s) 46, 139
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 103
AsuII TTCGAA 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 33
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 47
BisI GCNGC 2 cut(s) 47, 109
BlsI GCNGC 2 cut(s) 48, 110
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 87, 103
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 57, 171
BseDI CCNNGG 2 cut(s) 87, 103
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 57, 171
BseXI GCAGC 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 137
BsiSI CCGG 2 cut(s) 89, 129
BsmAI GTCTC 1 cut(s) 303
Bsp119I TTCGAA 1 cut(s) 156
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 225
BspFNI CGCG 1 cut(s) 137
BspT104I TTCGAA 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 2 cut(s) 57, 171
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 87, 103
Bst4CI ACNGT 1 cut(s) 25
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 6, 233
BstFNI CGCG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 2 cut(s) 46, 139
BstMAI GTCTC 1 cut(s) 303
BstMWI GCNNNNNNNGC 2 cut(s) 129, 134
BstSCI CCNGG 1 cut(s) 87
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 2 cut(s) 46, 139
Cfr10I RCCGGY 1 cut(s) 128
CseI GACGC 1 cut(s) 143
CviAII CATG 1 cut(s) 313
CviJI RGCY 4 cut(s) 5, 123, 182, 299
CviKI_1 RGCY 4 cut(s) 5, 123, 182, 299
DdeI CTNAG 2 cut(s) 6, 233
Eco47III AGCGCT 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 165
FaeI CATG 1 cut(s) 316
FaiI YATR 5 cut(s) 195, 206, 245, 262, 314
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 47, 109
Fsp4HI GCNGC 2 cut(s) 47, 109
FspBI CTAG 1 cut(s) 296
GlaI GCGC 2 cut(s) 45, 138
GluI GCNGC 2 cut(s) 47, 109
HaeII RGCGCY 1 cut(s) 47
HapII CCGG 2 cut(s) 89, 129
HgaI GACGC 1 cut(s) 143
HhaI GCGC 2 cut(s) 46, 139
Hin1II CATG 1 cut(s) 316
Hin6I GCGC 2 cut(s) 44, 137
HinP1I GCGC 2 cut(s) 44, 137
HinfI GANTC 4 cut(s) 68, 73, 235, 324
HpaII CCGG 2 cut(s) 89, 129
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 83, 280
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 88, 331
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 21, 362, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 134
HpyF3I CTNAG 2 cut(s) 6, 233
Hsp92II CATG 1 cut(s) 316
HspAI GCGC 2 cut(s) 44, 137
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 206, 351
LpnPI CCDG 5 cut(s) 38, 102, 142, 184, 201
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 296
MboII GAAGA 2 cut(s) 170, 329
MluCI AATT 1 cut(s) 165
MlyI GAGTC 3 cut(s) 62, 244, 333
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 4 cut(s) 113, 244, 250, 407
MreI CGCCGGCG 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 2 cut(s) 291, 406
MspI CCGG 2 cut(s) 89, 129
MspR9I CCNGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 129, 134
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 89
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 1 cut(s) 316
NmeAIII GCCGAG 1 cut(s) 84
NspV TTCGAA 1 cut(s) 156
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 73
PflFI GACNNNGTC 1 cut(s) 234
PkrI GCNGC 2 cut(s) 48, 110
PleI GAGTC 3 cut(s) 62, 243, 332
PpsI GAGTC 3 cut(s) 62, 243, 332
PsyI GACNNNGTC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 291, 406
SatI GCNGC 2 cut(s) 47, 109
SchI GAGTC 3 cut(s) 62, 244, 333
ScrFI CCNGG 1 cut(s) 89
SetI ASST 4 cut(s) 255, 261, 297, 399
SfaNI GCATC 1 cut(s) 349
SfuI TTCGAA 1 cut(s) 156
SgrAI CRCCGGYG 1 cut(s) 128
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 3 cut(s) 71, 156, 255
TasI AATT 1 cut(s) 165
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 2 cut(s) 291, 406
Tru9I TTAA 2 cut(s) 291, 406
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 177
Tth111I GACNNNGTC 1 cut(s) 234
XapI RAATTY 1 cut(s) 165
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.