Rh1BG130300

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001185
Physical Location & Seq
Reverse (-)
21889785 .. 21891025
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG130300.1

Sequence Viewer

Length: 876 bp
ATGGGGGAAGTAGCGTCCTCTCAACGAAGAACAGAGCCACAGCAGCGGAGTCGTCGACAAGTAAGGCGGCAGGTGGGGCGGCAGGTGCGGCAGCAGGTGCCGCAGCAGGTGCAGCAGGAGCGCTTACATAATTTCGAAGCTATTTGGAAAGATGCCGACATTTCAATATTAGATCGTATGCCTTCGGACGTGTGGGAACATCTCCAAGATGAAAATCATGGATTACTCTTAAACCAAAAGAAGAAGAAGTATTGGGTTGACGAGAAGTTGAACAACTGCTTCATGGTGTATCCAAGGGCTCTCACAATCACTTGGGCTGATTCGGCTAAAGACAATCGTTACTGGCACTGGACTTCCCTGGAAGACGGTAAGGTCTTCATCGATGCAGCTGAACTGCTAAATGTATGCTGGCTTGATGTTCAAGGAAAAATTGATTCCACAATGCTGTCACCAGGAACTCTATATGAAGTAGTATTTATAGTGAAGTTGAAACAAGCAGCTTATGGATGGAGAGTTCCTGTCAATGTCAGATTCACTCTCCCAGATGGTAGCAAGCAGCAAGAACGTAAAGCTGTTGATCTGAATAAAATCCCAAGAGAAGAATGGAGAGAGATACCTGTAGGCGAGTTTACAGCATCACCAGGATTGCTTGGGAACATTGAATTTTCGATGTATGAACATGAAAGTGGGCAATGGAAGAGTGGACTTCTGATCAAGGGCGTTGCCGTTCGGCCTAAAAACAAAGAGGGAAAAACTTCGCTTATTTCACGAGACAGAGAGCTTTTGCGGAGGACTGAGAGATTCACGAGAGAGACTGAGGTTTCACGAGAGATAAAGAGAGGCGTTTCGGGGAGGCTATTCAAGAGAGAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

291

Amino Acids

34.08

Weight (kDa)

9.57

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 92 - 245 1.7e-43 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 61, 73, 85, 97
AasI GACNNNNNNGTC 1 cut(s) 371
Acc36I ACCTGC 4 cut(s) 61, 73, 85, 97
AccB1I GGYRCC 1 cut(s) 97
AccI GTMKAC 1 cut(s) 55
AciI CCGC 6 cut(s) 46, 67, 79, 88, 101, 787
AcsI RAATTY 1 cut(s) 662
AfeI AGCGCT 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 6 cut(s) 165, 271, 422, 490, 662, 862
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 3 cut(s) 357, 451, 640
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 5 cut(s) 140, 389, 500, 572, 781
AluI AGCT 5 cut(s) 140, 389, 500, 572, 781
Alw26I GTCTC 2 cut(s) 765, 806
Aor51HI AGCGCT 1 cut(s) 122
AoxI GGCC 1 cut(s) 731
ApeKI GCWGC 7 cut(s) 43, 91, 103, 112, 386, 497, 556
ApoI RAATTY 1 cut(s) 662
Asp700I GAANNNNTTC 1 cut(s) 754
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 441, 630
AsuII TTCGAA 1 cut(s) 135
BanI GGYRCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 301
BauI CACGAG 3 cut(s) 768, 805, 825
BbsI GAAGAC 2 cut(s) 367, 369
BbvI GCAGC 7 cut(s) 55, 103, 115, 124, 398, 509, 568
BccI CCATC 2 cut(s) 501, 539
BceAI ACGGC 1 cut(s) 710
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 3 cut(s) 359, 453, 642
BciVI GTATCC 1 cut(s) 300
BclI TGATCA 1 cut(s) 711
BcoDI GTCTC 2 cut(s) 765, 806
BfmI CTRYAG 1 cut(s) 618
BfoI RGCGCY 1 cut(s) 124
BfuAI ACCTGC 4 cut(s) 61, 73, 85, 97
BfuI GTATCC 1 cut(s) 300
Bme1390I CCNGG 3 cut(s) 359, 453, 642
BmgBI CACGTC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 3 cut(s) 359, 453, 642
BmsI GCATC 3 cut(s) 142, 373, 644
BpiI GAAGAC 2 cut(s) 367, 369
Bpu14I TTCGAA 1 cut(s) 135
Bsa29I ATCGAT 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 293, 357
Bse1I ACTGG 2 cut(s) 347, 353
Bse3DI GCAATG 1 cut(s) 698
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 3 cut(s) 359, 453, 642
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 293, 357
BseGI GGATG 1 cut(s) 512
BseJI GATNNNNATC 1 cut(s) 213
BseMI GCAATG 1 cut(s) 698
BseMII CTCAG 2 cut(s) 786, 807
BseNI ACTGG 2 cut(s) 347, 353
BseXI GCAGC 7 cut(s) 55, 103, 115, 124, 398, 509, 568
BsgI GTGCAG 1 cut(s) 131
BshFI GGCC 1 cut(s) 733
BshNI GGYRCC 1 cut(s) 97
BshVI ATCGAT 1 cut(s) 381
BsmAI GTCTC 2 cut(s) 765, 806
BsnI GGCC 1 cut(s) 733
Bsp119I TTCGAA 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 3 cut(s) 172, 577, 711
BspACI CCGC 6 cut(s) 46, 67, 79, 88, 101, 787
BspANI GGCC 1 cut(s) 733
BspCNI CTCAG 2 cut(s) 787, 808
BspDI ATCGAT 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 99
BspMI ACCTGC 4 cut(s) 61, 73, 85, 97
BspT104I TTCGAA 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 698
BsrI ACTGG 2 cut(s) 347, 353
BssECI CCNNGG 2 cut(s) 293, 357
BssMI GATC 3 cut(s) 172, 577, 711
BssSI CACGAG 3 cut(s) 768, 805, 825
BssT1I CCWWGG 1 cut(s) 293
Bst2BI CACGAG 3 cut(s) 768, 805, 825
Bst2UI CCWGG 3 cut(s) 359, 453, 642
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 692
BstAPI GCANNNNNTGC 2 cut(s) 97, 109
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 410, 554
BstDEI CTNAG 2 cut(s) 795, 816
BstF5I GGATG 1 cut(s) 512
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 3 cut(s) 175, 580, 714
BstMAI GTCTC 2 cut(s) 765, 806
BstMBI GATC 3 cut(s) 172, 577, 711
BstNI CCWGG 3 cut(s) 359, 453, 642
BstSCI CCNGG 3 cut(s) 357, 451, 640
BstSFI CTRYAG 1 cut(s) 618
BstV1I GCAGC 7 cut(s) 55, 103, 115, 124, 398, 509, 568
BstV2I GAAGAC 2 cut(s) 367, 369
Bsu15I ATCGAT 1 cut(s) 381
BsuI GTATCC 1 cut(s) 300
BsuRI GGCC 1 cut(s) 733
BsuTUI ATCGAT 1 cut(s) 381
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 512
BtsIMutI CAGTG 1 cut(s) 346
BveI ACCTGC 4 cut(s) 61, 73, 85, 97
Cac8I GCNNGC 2 cut(s) 410, 554
CfoI GCGC 1 cut(s) 123
ClaI ATCGAT 1 cut(s) 381
CseI GACGC 1 cut(s) 3
CviAII CATG 3 cut(s) 218, 283, 680
DdeI CTNAG 2 cut(s) 795, 816
DpnI GATC 3 cut(s) 174, 579, 713
DpnII GATC 3 cut(s) 172, 577, 711
DrdI GACNNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 692
Eco130I CCWWGG 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 301
Eco47III AGCGCT 1 cut(s) 122
EcoRII CCWGG 3 cut(s) 357, 451, 640
EcoT14I CCWWGG 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 3 cut(s) 221, 286, 683
FatI CATG 3 cut(s) 217, 282, 679
FbaI TGATCA 1 cut(s) 711
FblI GTMKAC 1 cut(s) 55
FokI GGATG 1 cut(s) 519
FriOI GRGCYC 1 cut(s) 301
GlaI GCGC 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 1 cut(s) 733
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 123
Hin1II CATG 3 cut(s) 221, 286, 683
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 2 cut(s) 56, 259
HindII GTYRAC 2 cut(s) 56, 259
HinfI GANTC 5 cut(s) 49, 320, 434, 531, 801
HphI GGTGA 2 cut(s) 441, 630
Hpy166II GTNNAC 4 cut(s) 56, 259, 630, 704
Hpy188I TCNGA 4 cut(s) 187, 530, 582, 711
Hpy188III TCNNGA 4 cut(s) 768, 805, 825, 862
Hpy8I GTNNAC 4 cut(s) 56, 259, 630, 704
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 2 cut(s) 189, 565
HpyCH4V TGCA 2 cut(s) 112, 386
HpyF3I CTNAG 2 cut(s) 795, 816
HpySE526I ACGT 2 cut(s) 189, 565
Hsp92II CATG 3 cut(s) 221, 286, 683
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 3 cut(s) 172, 577, 711
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 7 cut(s) 55, 103, 115, 124, 398, 509, 568
LweI GCATC 3 cut(s) 142, 373, 644
MaeII ACGT 2 cut(s) 189, 565
MaeIII GTNAC 2 cut(s) 338, 447
MalI GATC 3 cut(s) 174, 579, 713
MboI GATC 3 cut(s) 172, 577, 711
MboII GAAGA 7 cut(s) 39, 253, 256, 367, 374, 611, 709
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 3 cut(s) 130, 429, 662
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 7 cut(s) 28, 739, 783, 811, 833, 846, 862
MroXI GAANNNNTTC 1 cut(s) 754
MseI TTAA 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 684
MspA1I CMGCKG 2 cut(s) 46, 389
MspR9I CCNGG 3 cut(s) 359, 453, 642
MvaI CCWGG 3 cut(s) 359, 453, 642
NdeII GATC 3 cut(s) 172, 577, 711
NlaIII CATG 3 cut(s) 221, 286, 683
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 447
NspV TTCGAA 1 cut(s) 135
PaqCI CACCTGC 4 cut(s) 61, 73, 85, 97
PdmI GAANNNNTTC 1 cut(s) 754
PfeI GAWTC 4 cut(s) 320, 434, 531, 801
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 357, 451, 640
PspGI CCWGG 3 cut(s) 357, 451, 640
PspN4I GGNNCC 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 389
RseI CAYNNNNRTG 1 cut(s) 684
SalI GTCGAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 230
Sau3AI GATC 3 cut(s) 172, 577, 711
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 3 cut(s) 359, 453, 642
SduI GDGCHC 1 cut(s) 301
SfaNI GCATC 3 cut(s) 142, 373, 644
SfcI CTRYAG 1 cut(s) 618
SfuI TTCGAA 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 684
Sse9I AATT 3 cut(s) 130, 429, 662
SsiI CCGC 6 cut(s) 46, 67, 79, 88, 101, 787
SspI AATATT 1 cut(s) 168
StyD4I CCNGG 3 cut(s) 357, 451, 640
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 2 cut(s) 192, 568
TaqI TCGA 4 cut(s) 55, 135, 381, 668
TasI AATT 3 cut(s) 130, 429, 662
TauI GCSGC 4 cut(s) 70, 82, 91, 103
TfiI GAWTC 4 cut(s) 320, 434, 531, 801
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 1 cut(s) 353
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 7 cut(s) 43, 91, 103, 112, 386, 497, 556
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 6 cut(s) 225, 271, 367, 480, 690, 696
TspRI CASTG 1 cut(s) 353
XapI RAATTY 1 cut(s) 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.