Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001185

Physical Location & Seq

Genomic Coordinates Reverse (-)

2765737 .. 2766830

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G029800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGGAGTCCAAAAATGACCATATGGTGTATGCAAAGGATCTCAAGATCACTTGGTCTAGAGACCGTCGTTACTGGCGATGGGTCAAAGACACTGAAAACAGTTACGTTGCTGAACTGTTAAATGTATGTTGGCTAAAAGTGAGTGGAAAACTTGAGAACGCAAACCTGTCACCAGGAACTCAGTATGAAGTTGTACTTGTGGCCAAGATGAAAACTAGAGCTTATGGATTTGATGATCCAGTGAATTTCAAAGTCACTTACCCAGGTGGTACAAATGACCGGCCCATTAATTTGGAGGTTGAGTTTAAGGATAGCAAAGATCAATGGAAAGACATTAAGTTGGGTGAGTTTGAAGCATCCGCAAATCAAGGGGACATCGAGTTTTTGCTGTATAAATATGGTGGGAAATGGAAGAGCGGACTTGTTATCAAGGGTGTTGCCGTTCGACCAAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

154

Amino Acids

17.63

Weight (kDa)

9.02

Isoelectric Point (pI)

20.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19840 AT4G19850 AT4G19850 AT4G19850
fragaria_vesca	FvH4_3g12180
malus_domestica	MD05G1253200.v1.1 MD05G1253400.v1.1 MD05G1254200.v1.1 MD05G1355300.v1.1 MD05G1355700.v1.1
prunus_persica	Prupe.4G107600_v2.0.a1 Prupe.4G107700_v2.0.a1 Prupe.4G110500_v2.0.a1 Prupe.8G029800_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030000_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030100_v2.0.a1 Prupe.8G030200_v2.0.a1
pyrus_communis	pycom05g23210 pycom05g32190
rosa_chinensis	RchiOBHm_Chr5g0019941
rosa_laevigata	RLG00000024434 RLG00000032488
rosa_multiflora	Rmu_co8241819.1_g000001 Rmu_co8402699.1_g000001 Rmu_sc0004353.1_g000009 Rmu_sc0014003.1_g000003 Rmu_sc0023185.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058240 Rroxscaffold_6G00412830
rosa_rugosa	Rorug03G0095100 Rorug03G0095200 Rorug05G0055500 Rorug05G0055600
rosa_samantha	Rh1AG162700 Rh1AG163200 Rh1AG164200 Rh1BG130300 Rh1CG152100 Rh1CG152500 Rh1CG153200 Rh3DG164900 Rh5AG145500 Rh5AG145600 Rh5BG145000 Rh5BG145100 Rh5CG156500 Rh5CG156700 Rh5DG144300 Rh5DG144500 Rh6AG081500
rosa_wichuraiana	Rw0G014150 Rw0G014960 Rw5G012860 Rw5G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	420
AciI	CCGC	3 cut(s)	5, 363, 420
AclWI	GGATC	2 cut(s)	48, 233
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	2 cut(s)	198, 274
AgsI	TTSAA	2 cut(s)	253, 356
AjnI	CCWGG	2 cut(s)	175, 265
AluBI	AGCT	2 cut(s)	224, 459
AluI	AGCT	2 cut(s)	224, 459
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	48, 233
AoxI	GGCC	2 cut(s)	204, 284
ApoI	RAATTY	1 cut(s)	247
AseI	ATTAAT	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	165, 359
BalI	TGGCCA	1 cut(s)	206
BccI	CCATC	1 cut(s)	75
BceAI	ACGGC	1 cut(s)	428
BciT130I	CCWGG	2 cut(s)	177, 267
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	60, 219
Bme1390I	CCNGG	2 cut(s)	177, 267
BmgT120I	GGNCC	1 cut(s)	285
BmrFI	CCNGG	2 cut(s)	177, 267
BmsI	GCATC	1 cut(s)	368
BpuEI	CTTGAG	2 cut(s)	29, 176
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	80, 242
BseBI	CCWGG	2 cut(s)	177, 267
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	80, 242
BshFI	GGCC	2 cut(s)	206, 286
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	206, 286
Bso31I	GGTCTC	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	40, 48, 238, 322
BspACI	CCGC	3 cut(s)	5, 363, 420
BspANI	GGCC	2 cut(s)	206, 286
BspCNI	CTCAG	1 cut(s)	196
BspPI	GGATC	2 cut(s)	48, 233
BspQI	GCTCTTC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	80, 242
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	4 cut(s)	40, 48, 238, 322
Bst2UI	CCWGG	2 cut(s)	177, 267
Bst4CI	ACNGT	3 cut(s)	68, 104, 120
Bst6I	CTCTTC	1 cut(s)	410
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	359
BstKTI	GATC	4 cut(s)	43, 51, 241, 325
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	4 cut(s)	40, 48, 238, 322
BstNI	CCWGG	2 cut(s)	177, 267
BstSCI	CCNGG	2 cut(s)	175, 265
BstX2I	RGATCY	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	206, 286
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	93, 249
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	197, 273
CviJI	RGCY	5 cut(s)	136, 206, 224, 286, 459
CviKI_1	RGCY	5 cut(s)	136, 206, 224, 286, 459
CviQI	GTAC	2 cut(s)	197, 273
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	4 cut(s)	42, 50, 240, 324
DpnII	GATC	4 cut(s)	40, 48, 238, 322
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	175, 265
FaiI	YATR	8 cut(s)	24, 26, 33, 130, 189, 228, 396, 402
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	1 cut(s)	389
FauNDI	CATATG	1 cut(s)	24
FokI	GGATG	1 cut(s)	346
FspBI	CTAG	2 cut(s)	60, 219
HaeIII	GGCC	2 cut(s)	206, 286
HapII	CCGG	1 cut(s)	283
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	2 cut(s)	165, 359
Hpy188III	TCNNGA	2 cut(s)	46, 60
Hpy99I	CGWCG	1 cut(s)	72
HpyCH4III	ACNGT	3 cut(s)	68, 104, 120
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	40, 48, 238, 322
LguI	GCTCTTC	1 cut(s)	410
LpnPI	CCDG	8 cut(s)	61, 162, 182, 189, 252, 255, 279, 296
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	2 cut(s)	60, 219
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	4 cut(s)	71, 104, 171, 256
MalI	GATC	4 cut(s)	42, 50, 240, 324
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	4 cut(s)	40, 48, 238, 322
MboII	GAAGA	1 cut(s)	427
MflI	RGATCY	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	2 cut(s)	247, 292
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	1 cut(s)	292
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	4 cut(s)	122, 291, 309, 339
Msp20I	TGGCCA	1 cut(s)	206
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	2 cut(s)	177, 267
MvaI	CCWGG	2 cut(s)	177, 267
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	4 cut(s)	40, 48, 238, 322
NmuCI	GTSAC	2 cut(s)	171, 256
PciSI	GCTCTTC	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	175, 265
PspGI	CCWGG	2 cut(s)	175, 265
PspPI	GGNCC	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	2 cut(s)	198, 274
RsaNI	GTAC	2 cut(s)	197, 273
SapI	GCTCTTC	1 cut(s)	410
SaqAI	TTAA	4 cut(s)	122, 291, 309, 339
Sau3AI	GATC	4 cut(s)	40, 48, 238, 322
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	177, 267
SetI	ASST	6 cut(s)	111, 171, 226, 271, 303, 461
SfaNI	GCATC	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	44, 155
SmoI	CTYRAG	2 cut(s)	44, 155
Sse9I	AATT	2 cut(s)	247, 292
SsiI	CCGC	3 cut(s)	5, 363, 420
SspMI	CTAG	2 cut(s)	60, 219
StyD4I	CCNGG	2 cut(s)	175, 265
TaaI	ACNGT	3 cut(s)	68, 104, 120
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	381, 448
TasI	AATT	2 cut(s)	247, 292
TatI	WGTACW	1 cut(s)	196
Tru1I	TTAA	4 cut(s)	122, 291, 309, 339
Tru9I	TTAA	4 cut(s)	122, 291, 309, 339
TscAI	CASTG	2 cut(s)	100, 249
TseFI	GTSAC	2 cut(s)	171, 256
Tsp45I	GTSAC	2 cut(s)	171, 256
TspDTI	ATGAA	2 cut(s)	204, 227
TspRI	CASTG	2 cut(s)	100, 249
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	247
XbaI	TCTAGA	1 cut(s)	59
XspI	CTAG	2 cut(s)	60, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.