Rw0G014150

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00634
OG0001185
Physical Location & Seq
Forward (+)
2511 .. 3199
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014150.1

Sequence Viewer

Length: 555 bp
ATGAACATCATCAATATCAATTATTATTCCTTTTTCCGAGTATTAACACTTTTGCTGTTATTGTTACAGAAGTATTGGGTTGACAAGAAGTCCAACAACTGCTTCATGGTGTATCCAAGGGATTTCTGGATTGTTTGGGGGGATGACAAACGTTACTGGCACTGGTCTTCCCTGGAAGAAACAAGTAATGTCTTTATTGATGTCCCTGAACTGTTAAAGGTCTCCTGGCTTGAAGTTCATGGAAATATTGATTCCACAAAGCTGTCACCAGGAACCCTATATGAAGTAGTCTTTATAGTGATGTTGAAAGCTGCAGCTTATGGATGGAAAGTTCCTGTCAATGTCCGCCTCAATGTCCCAGATGGTAACAACCAAGAACGTAAAGCTGATCTGAATAAATTCCCTAGAGAACAATGGACAGAGATACCAGTAGGCGAGTTTAGAGCATCAACAGGATTACTTGGGAACATTGAATTTTCGATGTGTGAATATGAAGATTTGAAATGGAAGAGTGGACTTCTGATCAAGGGCGTTGCCGTTCGGCCTAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009605 GO:0009607 GO:0009625 GO:0030246 GO:0043207 GO:0043394 GO:0050896 GO:0051704 GO:0051707 GO:0097367
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

184

Amino Acids

21.57

Weight (kDa)

7.71

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 33 - 182 1.8e-42 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 346
AclI AACGTT 1 cut(s) 151
AcsI RAATTY 2 cut(s) 398, 473
AgsI TTSAA 4 cut(s) 233, 307, 473, 502
AhdI GACNNNNNGTC 1 cut(s) 88
AjnI CCWGG 3 cut(s) 171, 224, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 4 cut(s) 262, 311, 317, 386
AluI AGCT 4 cut(s) 262, 311, 317, 386
Alw26I GTCTC 1 cut(s) 226
AoxI GGCC 1 cut(s) 542
ApeKI GCWGC 2 cut(s) 311, 314
ApoI RAATTY 2 cut(s) 398, 473
Asp700I GAANNNNTTC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 298, 326
BccI CCATC 2 cut(s) 318, 356
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 3 cut(s) 173, 226, 270
BciVI GTATCC 1 cut(s) 123
BclI TGATCA 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 312
BfuI GTATCC 1 cut(s) 123
BisI GCNGC 2 cut(s) 312, 315
BlsI GCNGC 2 cut(s) 313, 316
Bme1390I CCNGG 3 cut(s) 173, 226, 270
BmeRI GACNNNNNGTC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 3 cut(s) 173, 226, 270
BmsI GCATC 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 116, 171
Bse1I ACTGG 3 cut(s) 161, 167, 428
BseBI CCWGG 3 cut(s) 173, 226, 270
BseDI CCNNGG 2 cut(s) 116, 171
BseGI GGATG 2 cut(s) 148, 329
BseNI ACTGG 3 cut(s) 161, 167, 428
BseXI GCAGC 2 cut(s) 298, 326
BshFI GGCC 1 cut(s) 544
BslFI GGGAC 2 cut(s) 188, 341
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 2 cut(s) 188, 341
BsnI GGCC 1 cut(s) 544
Bso31I GGTCTC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 388, 522
BspACI CCGC 1 cut(s) 346
BspANI GGCC 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 226
BsrI ACTGG 3 cut(s) 161, 167, 428
BssECI CCNNGG 2 cut(s) 116, 171
BssMI GATC 2 cut(s) 388, 522
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 3 cut(s) 173, 226, 270
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 503
BstF5I GGATG 2 cut(s) 148, 329
BstKTI GATC 2 cut(s) 391, 525
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 2 cut(s) 388, 522
BstNI CCWGG 3 cut(s) 173, 226, 270
BstSCI CCNGG 3 cut(s) 171, 224, 268
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 298, 326
BstV2I GAAGAC 1 cut(s) 159
BsuI GTATCC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 544
BtsCI GGATG 2 cut(s) 148, 329
BtsIMutI CAGTG 1 cut(s) 160
CviAII CATG 2 cut(s) 106, 239
CviJI RGCY 6 cut(s) 229, 262, 311, 317, 386, 544
CviKI_1 RGCY 6 cut(s) 229, 262, 311, 317, 386, 544
DpnI GATC 2 cut(s) 390, 524
DpnII GATC 2 cut(s) 388, 522
DriI GACNNNNNGTC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 503
Eam1105I GACNNNNNGTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 503
EciI GGCGGA 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 226
EcoRII CCWGG 3 cut(s) 171, 224, 268
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 109, 242
FaiI YATR 7 cut(s) 107, 240, 280, 282, 296, 321, 492
FaqI GGGAC 2 cut(s) 188, 341
FatI CATG 2 cut(s) 105, 238
FbaI TGATCA 1 cut(s) 522
Fnu4HI GCNGC 2 cut(s) 312, 315
FokI GGATG 2 cut(s) 155, 336
Fsp4HI GCNGC 2 cut(s) 312, 315
FspBI CTAG 1 cut(s) 405
GluI GCNGC 2 cut(s) 312, 315
HaeIII GGCC 1 cut(s) 544
Hin1II CATG 2 cut(s) 109, 242
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 1 cut(s) 251
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 82, 515
Hpy188I TCNGA 3 cut(s) 38, 393, 522
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 82, 515
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 2 cut(s) 151, 379
HpyCH4V TGCA 1 cut(s) 314
HpySE526I ACGT 2 cut(s) 151, 379
Hsp92II CATG 2 cut(s) 109, 242
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 2 cut(s) 388, 522
Lsp1109I GCAGC 2 cut(s) 298, 326
LweI GCATC 1 cut(s) 455
MaeI CTAG 1 cut(s) 405
MaeII ACGT 2 cut(s) 151, 379
MaeIII GTNAC 4 cut(s) 63, 152, 264, 365
MalI GATC 2 cut(s) 390, 524
MboI GATC 2 cut(s) 388, 522
MboII GAAGA 4 cut(s) 159, 188, 506, 520
MluCI AATT 3 cut(s) 19, 398, 473
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 2 cut(s) 44, 215
MspR9I CCNGG 3 cut(s) 173, 226, 270
MvaI CCWGG 3 cut(s) 173, 226, 270
NdeII GATC 2 cut(s) 388, 522
NlaIII CATG 2 cut(s) 109, 242
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 2 cut(s) 313, 316
Psp1406I AACGTT 1 cut(s) 151
Psp6I CCWGG 3 cut(s) 171, 224, 268
PspGI CCWGG 3 cut(s) 171, 224, 268
PspN4I GGNNCC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 316
SaqAI TTAA 2 cut(s) 44, 215
SatI GCNGC 2 cut(s) 312, 315
Sau3AI GATC 2 cut(s) 388, 522
ScrFI CCNGG 3 cut(s) 173, 226, 270
SetI ASST 7 cut(s) 154, 222, 264, 313, 319, 382, 388
SfaNI GCATC 1 cut(s) 455
SfcI CTRYAG 1 cut(s) 312
Sse9I AATT 3 cut(s) 19, 398, 473
SsiI CCGC 1 cut(s) 346
SspI AATATT 1 cut(s) 247
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 3 cut(s) 171, 224, 268
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 2 cut(s) 154, 382
TaqI TCGA 1 cut(s) 479
TasI AATT 3 cut(s) 19, 398, 473
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 44, 215
Tru9I TTAA 2 cut(s) 44, 215
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 264
TseI GCWGC 2 cut(s) 311, 314
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 5 cut(s) 17, 94, 227, 297, 507
TspRI CASTG 1 cut(s) 167
XapI RAATTY 2 cut(s) 398, 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.