Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Reverse (-)

3011614 .. 3014552

Gene Structure 2939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTGCCTAACGAAGAACTTGTTCCGGTGAAGAGGATTACACCCCAGTCATCGTGGAGTTGGATTTCCATAGACGCGACGGGAAAAAAAACGGTGCTTGACGTTGACAAATATGTGATTATGCACCGTGTTCAGATCCACGCTCGCGATCTCCGGATACTTGACCCAAATCTCTTTTACCCTTCTGCTATTCTGGGTCGAGAAAGAGCCATTGTTCTTAACTTAGAGCATATCAAGGCGATCATCACTGCCAAAGAGGTTTTGATTCAGGATTCGTCAGATGAAAATCTTATTCCAACCCTGGAGGAGTTTCAGACACGCTTATCTGTTGGAAACAAGGCACACGGTGGTCAATTAGATGGTGATGTGGTTGAAGAAGATGAATCCGCGTTTGAATTTCGGGCACTAGAGGTTGCTTTGGAAGCTATTTGTAGCTTCCTAGCTGCAAGGACAATAGAATTAGAGAAGTCTGCTTATCCTGCTTTGGATGAACTTACCTTGAAGTTAACTAGCCGTAACTTGCTAAGGGTTTGTAAATTGAAGAGTTCCATGACCCGATTGACAGCTCAGGTCCAAAAGATAAAGGATGAGCTTGAACAGTTGTTGGAAGATGACGAAGATATGGCTGAACTCTACCTTTCAAGGAAGCTCGCGGGTGCATCTTCACCAGCTATTGATTCTGGTGAACACATTAATTGGTATCCTACGTCCCCAACAATAGGTGCTAAGATTTCCAGAGCAAAGAGCCATTTGGTGAGGTCAGCCACGGTTCGTGGGGACGACAAAAATGATGTTGAAGAAGTTGAAATGTTGCTTGAGGCACACTTTTATGCAAATCGACAGAACTTTGAACAAATTAACCGAGCTACGCGAGTATGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

294

Amino Acids

33.1

Weight (kDa)

5.24

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	26 - 218	2.4e-27	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	77, 147, 389, 653, 871
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	2 cut(s)	387, 653
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	395
AdeI	CACNNNGTG	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgsI	TTSAA	9 cut(s)	374, 395, 502, 541, 596, 642, 797, 806, 851
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	8 cut(s)	425, 435, 443, 566, 592, 649, 671, 866
AluI	AGCT	8 cut(s)	425, 435, 443, 566, 592, 649, 671, 866
AlwI	GGATC	1 cut(s)	130
Aor13HI	TCCGGA	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	395
AseI	ATTAAT	1 cut(s)	693
Asp700I	GAANNNNTTC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	571
AsuHPI	GGTGA	5 cut(s)	40, 374, 657, 695, 766
AvaII	GGWCC	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	406
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	1 cut(s)	302
BciVI	GTATCC	2 cut(s)	150, 711
BfaI	CTAG	3 cut(s)	407, 440, 510
BfuI	GTATCC	2 cut(s)	150, 711
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	571
BmrFI	CCNGG	1 cut(s)	302
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	668
BmuI	ACTGGG	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	323
Bpu10I	CCTNAGC	2 cut(s)	524, 567
BpuEI	CTTGAG	1 cut(s)	836
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	300, 765
BsaWI	WCCGGW	2 cut(s)	25, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	300, 765
BseGI	GGATG	2 cut(s)	493, 592
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	430
Bsh1236I	CGCG	5 cut(s)	77, 147, 389, 653, 871
BsiSI	CCGG	2 cut(s)	26, 154
BslFI	GGGAC	2 cut(s)	694, 791
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmFI	GGGAC	2 cut(s)	694, 791
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	135, 148, 240
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	2 cut(s)	387, 653
BspCNI	CTCAG	1 cut(s)	580
BspEI	TCCGGA	1 cut(s)	153
BspFNI	CGCG	5 cut(s)	77, 147, 389, 653, 871
BspPI	GGATC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	300, 765
BssMI	GATC	3 cut(s)	135, 148, 240
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	5 cut(s)	94, 128, 347, 600, 769
Bst6I	CTCTTC	2 cut(s)	26, 536
BstC8I	GCNNGC	2 cut(s)	145, 651
BstDEI	CTNAG	4 cut(s)	223, 524, 567, 726
BstDSI	CCRYGG	1 cut(s)	765
BstF5I	GGATG	2 cut(s)	493, 592
BstFNI	CGCG	5 cut(s)	77, 147, 389, 653, 871
BstKTI	GATC	3 cut(s)	138, 151, 243
BstMBI	GATC	3 cut(s)	135, 148, 240
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 479
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	406
BstUI	CGCG	5 cut(s)	77, 147, 389, 653, 871
BstV1I	GCAGC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BsuI	GTATCC	2 cut(s)	150, 711
BtgI	CCRYGG	1 cut(s)	765
BtsCI	GGATG	2 cut(s)	493, 592
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	145, 651
Cfr13I	GGNCC	1 cut(s)	571
CseI	GACGC	1 cut(s)	83
CviAII	CATG	1 cut(s)	550
DdeI	CTNAG	4 cut(s)	223, 524, 567, 726
DpnI	GATC	3 cut(s)	137, 150, 242
DpnII	GATC	3 cut(s)	135, 148, 240
DraIII	CACNNNGTG	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	26, 536
EarI	CTCTTC	2 cut(s)	26, 536
Eco47I	GGWCC	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	553
FaiI	YATR	8 cut(s)	71, 114, 122, 231, 551, 623, 831, 877
FaqI	GGGAC	2 cut(s)	694, 791
FatI	CATG	1 cut(s)	549
FauI	CCCGC	1 cut(s)	646
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	500, 599
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	3 cut(s)	407, 440, 510
GluI	GCNGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	323
HapII	CCGG	2 cut(s)	26, 154
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	553
HincII	GTYRAC	2 cut(s)	106, 507
HindII	GTYRAC	2 cut(s)	106, 507
HinfI	GANTC	4 cut(s)	265, 272, 383, 677
HpaI	GTTAAC	1 cut(s)	507
HpaII	CCGG	2 cut(s)	26, 154
HphI	GGTGA	5 cut(s)	40, 374, 657, 695, 766
Hpy166II	GTNNAC	3 cut(s)	106, 507, 686
Hpy188I	TCNGA	3 cut(s)	135, 280, 315
Hpy188III	TCNNGA	5 cut(s)	146, 154, 200, 269, 735
Hpy8I	GTNNAC	3 cut(s)	106, 507, 686
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	5 cut(s)	94, 128, 347, 600, 769
HpyCH4IV	ACGT	2 cut(s)	102, 707
HpyCH4V	TGCA	4 cut(s)	124, 446, 659, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 479
HpyF3I	CTNAG	4 cut(s)	223, 524, 567, 726
HpySE526I	ACGT	2 cut(s)	102, 707
Hsp92II	CATG	1 cut(s)	553
Kpn2I	TCCGGA	1 cut(s)	153
KspAI	GTTAAC	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	135, 148, 240
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	668
MaeI	CTAG	3 cut(s)	407, 440, 510
MaeII	ACGT	2 cut(s)	102, 707
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	3 cut(s)	137, 150, 242
MboI	GATC	3 cut(s)	135, 148, 240
MboII	GAAGA	9 cut(s)	26, 43, 386, 389, 553, 620, 629, 654, 809
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	6 cut(s)	353, 395, 458, 536, 694, 855
MmeI	TCCRAC	4 cut(s)	41, 310, 320, 585
MnlI	CCTC	6 cut(s)	27, 250, 298, 403, 750, 811
MroI	TCCGGA	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	4 cut(s)	219, 506, 693, 858
MslI	CAYNNNNRTG	1 cut(s)	828
MspI	CCGG	2 cut(s)	26, 154
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	5 cut(s)	77, 147, 389, 653, 871
MwoI	GCNNNNNNNGC	2 cut(s)	422, 479
NdeII	GATC	3 cut(s)	135, 148, 240
NlaIII	CATG	1 cut(s)	553
NruI	TCGCGA	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	4 cut(s)	265, 272, 383, 677
PkrI	GCNGC	1 cut(s)	445
PshBI	ATTAAT	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	135
RruI	TCGCGA	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	828
SaqAI	TTAA	4 cut(s)	219, 506, 693, 858
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	135, 148, 240
Sau96I	GGNCC	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	668
SinI	GGWCC	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	828
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	6 cut(s)	353, 395, 458, 536, 694, 855
SsiI	CCGC	2 cut(s)	387, 653
SspMI	CTAG	3 cut(s)	407, 440, 510
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	5 cut(s)	94, 128, 347, 600, 769
TaiI	ACGT	2 cut(s)	105, 710
TaqI	TCGA	2 cut(s)	199, 838
TasI	AATT	6 cut(s)	353, 395, 458, 536, 694, 855
TfiI	GAWTC	4 cut(s)	265, 272, 383, 677
Tru1I	TTAA	4 cut(s)	219, 506, 693, 858
Tru9I	TTAA	4 cut(s)	219, 506, 693, 858
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	3 cut(s)	297, 396, 504
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	571
VspI	ATTAAT	1 cut(s)	693
XapI	RAATTY	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	3 cut(s)	407, 440, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.