Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Reverse (-)

17792550 .. 17793747

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0112900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGATCAATGATCAAATACCTTTCAGGAAATTGCGCCCACTGTCTTCTAATACCACTCTTAACAGACTGTGCATCACCCTTACAAACACACAGACTGAAGATGTCTGCTGCTATCTTCAATTCTCCGGTTGCTGCATCTGGTTATGTTGGCTTAGCAACCAACCCTTCAAAAATTTTCCCAGCTAAAGACTCTATCGGATGGACCAAGAAAACCGTCTCCAATGGTTCAAGAACTTGCTGCATGAAGACGTGGAACCCGATCAACAACAAGAAGTTTGAGACTCTGTCTTACCTCCCACCACTCTCTGATGATTCAATTGCAAAGGAGATTGACTACATGCTCAAGAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGTTATGTTCATAGGGAGAATAGCAGGATGCCAGGGTACTATGATGGAAGATACTGGACATTGTGGAAGCTACCCATGTTTGGTTGTACCGACCCTTCTCTGGTGCTCAATGAAATCCAAGAGTGCAAAAAAACGTACCCAAGTGCTTATATACGCTGTTTAGCATTTGACAACCAGAACCAGGGTCAGTGCATGGCCTTTATCATTCAGAAGCCAACTGTCGCGGCCACCACCAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

208

Amino Acids

23.36

Weight (kDa)

8.87

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuBisCO_small	PF00101	93 - 200	3.9e-38	Ribulose bisphosphate carboxylase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	608
AciI	CCGC	1 cut(s)	608
AclWI	GGATC	2 cut(s)	352, 365
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	2 cut(s)	174, 371
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	3 cut(s)	422, 472, 521
AfiI	CCNNNNNNNGG	3 cut(s)	464, 484, 565
AgsI	TTSAA	5 cut(s)	121, 171, 231, 318, 371
AjiI	CACGTC	1 cut(s)	252
AjnI	CCWGG	2 cut(s)	415, 564
AluBI	AGCT	2 cut(s)	185, 454
AluI	AGCT	2 cut(s)	185, 454
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	2 cut(s)	223, 275
AlwI	GGATC	2 cut(s)	352, 365
AoxI	GGCC	2 cut(s)	579, 609
ApeKI	GCWGC	3 cut(s)	110, 134, 240
ApoI	RAATTY	2 cut(s)	174, 371
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	357
BarI	GAAGNNNNNNTAC	2 cut(s)	463, 495
BbsI	GAAGAC	2 cut(s)	38, 254
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	3 cut(s)	97, 121, 227
BccI	CCATC	3 cut(s)	195, 348, 422
BciT130I	CCWGG	2 cut(s)	417, 566
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	223, 275
BisI	GCNGC	4 cut(s)	111, 135, 241, 609
BlpI	GCTNAGC	1 cut(s)	154
BlsI	GCNGC	4 cut(s)	112, 136, 242, 610
Bme1390I	CCNGG	2 cut(s)	417, 566
Bme18I	GGWCC	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	257, 359
BmrFI	CCNGG	2 cut(s)	417, 566
BmsI	GCATC	3 cut(s)	83, 146, 402
BpiI	GAAGAC	2 cut(s)	38, 254
Bpu1102I	GCTNAGC	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	416, 565
BsaWI	WCCGGW	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	3 cut(s)	464, 484, 565
Bse1I	ACTGG	2 cut(s)	443, 618
BseBI	CCWGG	2 cut(s)	417, 566
BseDI	CCNNGG	2 cut(s)	416, 565
BseGI	GGATG	3 cut(s)	206, 359, 417
BseLI	CCNNNNNNNGG	3 cut(s)	464, 484, 565
BseNI	ACTGG	2 cut(s)	443, 618
BseXI	GCAGC	3 cut(s)	97, 121, 227
BseYI	CCCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	2 cut(s)	581, 611
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	464, 484, 565
BsmAI	GTCTC	2 cut(s)	223, 275
BsmBI	CGTCTC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	581, 611
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	5, 12, 261, 357
Bsp1720I	GCTNAGC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	2 cut(s)	581, 611
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	2 cut(s)	257, 359
BspPI	GGATC	2 cut(s)	352, 365
BsrI	ACTGG	2 cut(s)	443, 618
BssECI	CCNNGG	2 cut(s)	416, 565
BssMI	GATC	4 cut(s)	5, 12, 261, 357
Bst2UI	CCWGG	2 cut(s)	417, 566
Bst4CI	ACNGT	4 cut(s)	44, 71, 217, 604
BstDEI	CTNAG	1 cut(s)	154
BstF5I	GGATG	3 cut(s)	206, 359, 417
BstFNI	CGCG	1 cut(s)	608
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	4 cut(s)	8, 15, 264, 360
BstMAI	GTCTC	2 cut(s)	223, 275
BstMBI	GATC	4 cut(s)	5, 12, 261, 357
BstNI	CCWGG	2 cut(s)	417, 566
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	2 cut(s)	415, 564
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	3 cut(s)	97, 121, 227
BstV2I	GAAGAC	2 cut(s)	38, 254
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	581, 611
BtrI	CACGTC	1 cut(s)	252
BtsCI	GGATG	3 cut(s)	206, 359, 417
BtsIMutI	CAGTG	3 cut(s)	40, 578, 625
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	204
Csp6I	GTAC	3 cut(s)	421, 471, 520
CviAII	CATG	4 cut(s)	244, 340, 460, 577
CviJI	RGCY	6 cut(s)	153, 185, 454, 581, 598, 611
CviKI_1	RGCY	6 cut(s)	153, 185, 454, 581, 598, 611
CviQI	GTAC	3 cut(s)	421, 471, 520
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	4 cut(s)	7, 14, 263, 359
DpnII	GATC	4 cut(s)	5, 12, 261, 357
EaeI	YGGCCR	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	415, 564
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	4 cut(s)	247, 343, 463, 580
FatI	CATG	4 cut(s)	243, 339, 459, 576
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	111, 135, 241, 609
FokI	GGATG	3 cut(s)	213, 366, 424
Fsp4HI	GCNGC	4 cut(s)	111, 135, 241, 609
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	4 cut(s)	111, 135, 241, 609
GsaI	CCCAGC	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	581, 611
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	4 cut(s)	247, 343, 463, 580
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	191, 283, 314
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	200, 310, 594
Hpy188III	TCNNGA	3 cut(s)	27, 231, 346
HpyAV	CCTTC	3 cut(s)	177, 343, 489
HpyCH4III	ACNGT	4 cut(s)	44, 71, 217, 604
HpyCH4IV	ACGT	2 cut(s)	251, 518
HpyCH4V	TGCA	6 cut(s)	74, 137, 243, 323, 510, 576
HpyF3I	CTNAG	1 cut(s)	154
HpySE526I	ACGT	2 cut(s)	251, 518
Hsp92II	CATG	4 cut(s)	247, 343, 463, 580
HspAI	GCGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	5, 12, 261, 357
Lsp1109I	GCAGC	3 cut(s)	97, 121, 227
LweI	GCATC	3 cut(s)	83, 146, 402
MaeII	ACGT	2 cut(s)	251, 518
MalI	GATC	4 cut(s)	7, 14, 263, 359
MboI	GATC	4 cut(s)	5, 12, 261, 357
MboII	GAAGA	5 cut(s)	38, 109, 112, 259, 444
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	5 cut(s)	31, 121, 174, 318, 371
MlyI	GAGTC	2 cut(s)	185, 277
MnlI	CCTC	2 cut(s)	305, 373
MseI	TTAA	1 cut(s)	62
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	417, 566
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	2 cut(s)	417, 566
MvnI	CGCG	1 cut(s)	608
NdeII	GATC	4 cut(s)	5, 12, 261, 357
NlaIII	CATG	4 cut(s)	247, 343, 463, 580
NlaIV	GGNNCC	2 cut(s)	257, 359
NspI	RCATGY	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	314
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	112, 136, 242, 610
PleI	GAGTC	2 cut(s)	185, 277
PpsI	GAGTC	2 cut(s)	185, 277
Psp6I	CCWGG	2 cut(s)	415, 564
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	2 cut(s)	415, 564
PspN4I	GGNNCC	2 cut(s)	257, 359
PspPI	GGNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	357
PsyI	GACNNNGTC	1 cut(s)	286
RsaI	GTAC	3 cut(s)	422, 472, 521
RsaNI	GTAC	3 cut(s)	421, 471, 520
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	4 cut(s)	111, 135, 241, 609
Sau3AI	GATC	4 cut(s)	5, 12, 261, 357
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	2 cut(s)	185, 277
ScrFI	CCNGG	2 cut(s)	417, 566
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	7 cut(s)	24, 187, 254, 297, 384, 456, 521
SfaNI	GCATC	3 cut(s)	83, 146, 402
SinI	GGWCC	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	5 cut(s)	31, 121, 174, 318, 371
SsiI	CCGC	1 cut(s)	608
StyD4I	CCNGG	2 cut(s)	415, 564
TaaI	ACNGT	4 cut(s)	44, 71, 217, 604
TaiI	ACGT	2 cut(s)	254, 521
TasI	AATT	5 cut(s)	31, 121, 174, 318, 371
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	3 cut(s)	47, 578, 625
TseI	GCWGC	3 cut(s)	110, 134, 240
TspDTI	ATGAA	3 cut(s)	260, 383, 510
TspRI	CASTG	3 cut(s)	47, 578, 625
Tth111I	GACNNNGTC	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	2 cut(s)	174, 371
XceI	RCATGY	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.