Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

8579470 .. 8582092

Gene Structure 2623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTATATTGTGCTTCGTGATTTTCCATTTGAATACCGGTCATTAGAAGTTGCACTAGAAGCTATTTGTACTTCTCTTGATGCTTGCACAAGAGAACTAGAGAGTGATGCTTATCCAGCTTTAGATGAGCTTACGTCCAAGATCAGCAGTCGTAATTTGGATCGGGTGCATAAGCTGAAGAGTGCAATGACCAAGTTGACAAATCGGGTTCAAAAGGTAAGGGATGAACTTGAACAGCTACTTGACGATGACGATGATGATGACATGGCCGACCTTTACTTATCAAGAAAGTTGGTTGGGACTTCACCTGTGAGTGACTCTGGTGCTCCAAATTGGTCTTTCGCCTCTCCTACTATAACCATAGGCTCTAAAGTATCCAGAGCTAGCAGGGCAAGTGTAACAACAGTTCAGGAGGAGAATGACGTGGAGGAGCTTGAGATGTTGCTCGAGGCCTACTTTATGCAAATTGAAGGCACGTTGAATAAATTGACCACGATATGCACTAGAACTGCTCTGCGTGAATACATTGATGACACAGAGGATTACATTAACATCCAGCTTGACAATCATCGGAATCAGCTAATTCAGCTAGAGCTGTTTCTGAGTTCCAGAACTGTTTGTGTGTCTATATATTCTTTGGTGGCTGCAATATTTGGCATGAACATTCCATATACATGGAACGAAAATCATGAGCATGTATTCAAATGGGTATGTACAGTAAAAACAGTGAATAATTCATTATATGGCTTGAAAATAGTATTTATTGTGCTGGTCACCATGTATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

262

Amino Acids

29.91

Weight (kDa)

4.68

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	8 - 97	3.7e-11	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	70, 715
AgeI	ACCGGT	1 cut(s)	36
AgsI	TTSAA	7 cut(s)	32, 212, 233, 470, 481, 703, 751
AjiI	CACGTC	1 cut(s)	424
Alw21I	GWGCWC	1 cut(s)	328
AlwI	GGATC	1 cut(s)	168
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	267, 450
ApeKI	GCWGC	1 cut(s)	644
AsiGI	ACCGGT	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	297, 766
AsuNHI	GCTAGC	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	631
BciVI	GTATCC	1 cut(s)	385
BfaI	CTAG	5 cut(s)	56, 98, 384, 504, 590
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	1 cut(s)	645
BlsI	GCNGC	1 cut(s)	646
BmeT110I	CYCGRG	1 cut(s)	446
BmgBI	CACGTC	1 cut(s)	424
BmsI	GCATC	2 cut(s)	70, 97
BmtI	GCTAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	192
Bse8I	GATNNNNATC	1 cut(s)	111
BseGI	GGATG	2 cut(s)	229, 552
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	593
BseRI	GAGGAG	2 cut(s)	428, 443
BseXI	GCAGC	1 cut(s)	631
BshFI	GGCC	2 cut(s)	269, 452
BshTI	ACCGGT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	269, 452
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	713
Bsp143I	GATC	2 cut(s)	141, 160
BspANI	GGCC	2 cut(s)	269, 452
BspCNI	CTCAG	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	688
BspOI	GCTAGC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	713
BssAI	RCCGGY	1 cut(s)	36
BssMI	GATC	2 cut(s)	141, 160
Bst4CI	ACNGT	4 cut(s)	406, 616, 718, 727
Bst6I	CTCTTC	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	713
BstC8I	GCNNGC	2 cut(s)	85, 385
BstDEI	CTNAG	1 cut(s)	602
BstEII	GGTNACC	1 cut(s)	772
BstF5I	GGATG	2 cut(s)	229, 552
BstKTI	GATC	2 cut(s)	144, 163
BstMBI	GATC	2 cut(s)	141, 160
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 116, 389, 586
BstNSI	RCATGY	1 cut(s)	698
BstPI	GGTNACC	1 cut(s)	772
BstV1I	GCAGC	1 cut(s)	631
BstXI	CCANNNNNNTGG	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	269, 452
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	229, 552
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	2 cut(s)	85, 385
CciI	TCATGA	1 cut(s)	688
Cfr10I	RCCGGY	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	69, 714
CspAI	ACCGGT	1 cut(s)	36
CviAII	CATG	6 cut(s)	265, 658, 675, 689, 695, 778
CviQI	GTAC	2 cut(s)	69, 714
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	2 cut(s)	143, 162
DpnII	GATC	2 cut(s)	141, 160
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	446
Eco91I	GGTNACC	1 cut(s)	772
EcoO65I	GGTNACC	1 cut(s)	772
FaeI	CATG	6 cut(s)	268, 661, 678, 692, 698, 781
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	6 cut(s)	264, 657, 674, 688, 694, 777
Fnu4HI	GCNGC	1 cut(s)	645
FokI	GGATG	2 cut(s)	236, 539
Fsp4HI	GCNGC	1 cut(s)	645
FspBI	CTAG	5 cut(s)	56, 98, 384, 504, 590
GluI	GCNGC	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	269, 452
HapII	CCGG	1 cut(s)	37
Hin1II	CATG	6 cut(s)	268, 661, 678, 692, 698, 781
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	2 cut(s)	317, 574
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	2 cut(s)	297, 766
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	2 cut(s)	573, 603
Hpy188III	TCNNGA	8 cut(s)	17, 77, 285, 378, 410, 609, 689, 786
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	4 cut(s)	406, 616, 718, 727
HpyCH4IV	ACGT	3 cut(s)	134, 423, 476
HpyCH4V	TGCA	7 cut(s)	53, 87, 169, 185, 463, 501, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 116, 389, 586
HpyF3I	CTNAG	1 cut(s)	602
HpySE526I	ACGT	3 cut(s)	134, 423, 476
Hsp92II	CATG	6 cut(s)	268, 661, 678, 692, 698, 781
Kzo9I	GATC	2 cut(s)	141, 160
LmnI	GCTCC	2 cut(s)	331, 430
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	2 cut(s)	70, 97
MaeI	CTAG	5 cut(s)	56, 98, 384, 504, 590
MaeII	ACGT	3 cut(s)	134, 423, 476
MaeIII	GTNAC	3 cut(s)	314, 397, 772
MalI	GATC	2 cut(s)	143, 162
MboI	GATC	2 cut(s)	141, 160
MboII	GAAGA	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	6 cut(s)	154, 331, 465, 485, 582, 733
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	5 cut(s)	355, 406, 421, 442, 532
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	2 cut(s)	673, 693
MspI	CCGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	4 cut(s)	59, 116, 389, 586
NdeII	GATC	2 cut(s)	141, 160
NheI	GCTAGC	1 cut(s)	383
NlaIII	CATG	6 cut(s)	268, 661, 678, 692, 698, 781
NmuCI	GTSAC	2 cut(s)	314, 772
NspI	RCATGY	1 cut(s)	698
PaeR7I	CTCGAG	1 cut(s)	446
PagI	TCATGA	1 cut(s)	688
PceI	AGGCCT	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	574
PinAI	ACCGGT	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	646
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PspEI	GGTNACC	1 cut(s)	772
PspXI	VCTCGAGB	1 cut(s)	446
PsrI	GAACNNNNNNTAC	2 cut(s)	390, 422
RsaI	GTAC	2 cut(s)	70, 715
RsaNI	GTAC	2 cut(s)	69, 714
RseI	CAYNNNNRTG	2 cut(s)	673, 693
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	1 cut(s)	645
Sau3AI	GATC	2 cut(s)	141, 160
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	328
SfaNI	GCATC	2 cut(s)	70, 97
Sfr274I	CTCGAG	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	673, 693
SmlI	CTYRAG	2 cut(s)	434, 446
SmoI	CTYRAG	2 cut(s)	434, 446
Sse9I	AATT	6 cut(s)	154, 331, 465, 485, 582, 733
SseBI	AGGCCT	1 cut(s)	452
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	5 cut(s)	56, 98, 384, 504, 590
StuI	AGGCCT	1 cut(s)	452
TaaI	ACNGT	4 cut(s)	406, 616, 718, 727
TaiI	ACGT	3 cut(s)	137, 426, 479
TaqI	TCGA	1 cut(s)	447
TasI	AATT	6 cut(s)	154, 331, 465, 485, 582, 733
TatI	WGTACW	2 cut(s)	68, 713
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	2 cut(s)	314, 772
TseI	GCWGC	1 cut(s)	644
Tsp45I	GTSAC	2 cut(s)	314, 772
TspDTI	ATGAA	3 cut(s)	240, 674, 726
TspRI	CASTG	1 cut(s)	732
XceI	RCATGY	1 cut(s)	698
XhoI	CTCGAG	1 cut(s)	446
XspI	CTAG	5 cut(s)	56, 98, 384, 504, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.