Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Reverse (-)

55228606 .. 55232953

Gene Structure 4348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGACTGCTTTGGAAATGGCTCGAGATGGGTCCCTAGTTAATTTGGAGACTCAATCTCAAGCTAACAAGAAGACTGCAGCTTTAAGGAGCTGGATTTCATTGGACCAAGATGGCCAAGGAACCGTTTTGGATTTGGACAAGTATGCTATTATGCGCCGAGTTAACATTCACGCTCGAGATCTTCGGCTTCTTGATCCATTGCTATCCTATCCTTCCACAATTTTGGGCAGAGAGAAAGTCATTGTTCTCAATTTGGAGCACATCAAAGCAATAATCACAGCGGAGGAGGTATTGCTTAGGGACCCATTTGATGATAATGTGCTGCCTATTGTTGAGGAACTTCAAAGACGTTTGCCTCCGACAAGTGCCAATTTCAATGGCCCAGGAGAAGAAGAAGACTCCGGGTTACAAAAAGATGTTGAAACCAGTGAAGATGATGATTTTCCATTTGAATTCCGGGCATTAGAAGTTGCACTAGAAGCTATTTGTACTTCTCTTGATGCTTGCACAAGAGAACTAGAGAGTGATGCTTATCCAGCTTTAGATGAGCTTACCTCCAAGATCAGCAGTCGTAATTTGGATCGGGTGCGTAAGCTGAAGAGCGCAATGACCAGGTTGACAAATCGGGTTCAAAAGGTAAGGGATGAACTCGAACAGCTACTTGACGATGACGATGACATGGCCGACCTTTACTTATCAAGAAAGTTGGTTGGGACTTCACCTGTGAGTGACTCTGGTGCTCCAAATTGGTCTCTCGCCTCTCCTACTATAACCATAGGCTCTAAAGTATCCAGAGCCAGCAGGGCGAGTGTAACAACAGTTCAGGAGGAGAATGACGTGGAGGAGCTTGAGATGTTGCTCGAGGCCTACTTTATGCAAATTGAAGGCACGTTGAATAAATTGACCACGGTATGCACTAGAACTGCTGTTTCAGCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

313

Amino Acids

34.86

Weight (kDa)

4.55

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	37 - 235	1.3e-26	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	188, 588
AcoI	YGGCCR	2 cut(s)	112, 681
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	1 cut(s)	490
AgsI	TTSAA	7 cut(s)	344, 376, 422, 452, 632, 884, 895
AjiI	CACGTC	1 cut(s)	838
AjnI	CCWGG	2 cut(s)	382, 611
AluBI	AGCT	9 cut(s)	62, 80, 90, 482, 539, 550, 595, 658, 847
AluI	AGCT	9 cut(s)	62, 80, 90, 482, 539, 550, 595, 658, 847
Alw21I	GWGCWC	2 cut(s)	261, 742
Alw26I	GTCTC	2 cut(s)	41, 756
AlwI	GGATC	2 cut(s)	188, 588
Ama87I	CYCGRG	3 cut(s)	21, 174, 860
AoxI	GGCC	4 cut(s)	112, 379, 681, 864
ApeKI	GCWGC	2 cut(s)	77, 322
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	2 cut(s)	156, 605
AspS9I	GGNCC	4 cut(s)	30, 103, 301, 380
AsuC2I	CCSGG	2 cut(s)	403, 458
AsuHPI	GGTGA	1 cut(s)	711
AvaI	CYCGRG	3 cut(s)	21, 174, 860
AvaII	GGWCC	3 cut(s)	30, 103, 301
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	2 cut(s)	77, 402
Bbv12I	GWGCWC	2 cut(s)	261, 742
BbvI	GCAGC	2 cut(s)	89, 309
BccI	CCATC	2 cut(s)	20, 104
BciT130I	CCWGG	2 cut(s)	384, 613
BciVI	GTATCC	1 cut(s)	799
BcnI	CCSGG	2 cut(s)	403, 458
BcoDI	GTCTC	2 cut(s)	41, 756
BfaI	CTAG	4 cut(s)	35, 476, 518, 918
BfmI	CTRYAG	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	799
BglI	GCCNNNNNGGC	1 cut(s)	803
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	2 cut(s)	78, 323
BlsI	GCNGC	2 cut(s)	79, 324
Bme1390I	CCNGG	4 cut(s)	384, 403, 458, 613
Bme18I	GGWCC	3 cut(s)	30, 103, 301
BmeT110I	CYCGRG	3 cut(s)	21, 174, 860
BmgBI	CACGTC	1 cut(s)	838
BmgT120I	GGNCC	4 cut(s)	30, 103, 301, 380
BmiI	GGNNCC	5 cut(s)	31, 32, 121, 302, 303
BmrFI	CCNGG	4 cut(s)	384, 403, 458, 613
BmsI	GCATC	2 cut(s)	490, 517
BpiI	GAAGAC	2 cut(s)	77, 402
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	2 cut(s)	42, 869
BpuMI	CCSGG	2 cut(s)	403, 458
BsaBI	GATNNNNATC	1 cut(s)	531
BsaI	GGTCTC	1 cut(s)	756
BsaJI	CCNNGG	3 cut(s)	115, 382, 906
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	2 cut(s)	197, 612
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	384, 613
BseDI	CCNNGG	3 cut(s)	115, 382, 906
BseGI	GGATG	1 cut(s)	649
BseJI	GATNNNNATC	1 cut(s)	531
BseMI	GCAATG	2 cut(s)	197, 612
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	3 cut(s)	299, 842, 857
BseXI	GCAGC	2 cut(s)	89, 309
BshFI	GGCC	4 cut(s)	114, 381, 683, 866
BsiHKAI	GWGCWC	2 cut(s)	261, 742
BsiHKCI	CYCGRG	3 cut(s)	21, 174, 860
BsiSI	CCGG	2 cut(s)	402, 457
BslFI	GGGAC	3 cut(s)	16, 314, 727
BsmAI	GTCTC	2 cut(s)	41, 756
BsmFI	GGGAC	3 cut(s)	16, 314, 727
BsnI	GGCC	4 cut(s)	114, 381, 683, 866
Bso31I	GGTCTC	1 cut(s)	756
BsoBI	CYCGRG	3 cut(s)	21, 174, 860
Bsp1286I	GDGCHC	2 cut(s)	261, 742
Bsp143I	GATC	4 cut(s)	178, 193, 561, 580
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	4 cut(s)	114, 381, 683, 866
BspLI	GGNNCC	5 cut(s)	31, 32, 121, 302, 303
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	2 cut(s)	188, 588
BspQI	GCTCTTC	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	756
BsrDI	GCAATG	2 cut(s)	197, 612
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	3 cut(s)	115, 382, 906
BssMI	GATC	4 cut(s)	178, 193, 561, 580
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	384, 613
Bst4CI	ACNGT	3 cut(s)	124, 820, 910
Bst6I	CTCTTC	1 cut(s)	593
BstC8I	GCNNGC	3 cut(s)	505, 799, 937
BstDEI	CTNAG	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	906
BstF5I	GGATG	1 cut(s)	649
BstHHI	GCGC	2 cut(s)	156, 605
BstKTI	GATC	4 cut(s)	181, 196, 564, 583
BstMAI	GTCTC	2 cut(s)	41, 756
BstMBI	GATC	4 cut(s)	178, 193, 561, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	479, 536, 803, 932
BstNI	CCWGG	2 cut(s)	384, 613
BstNSI	RCATGY	1 cut(s)	939
BstSCI	CCNGG	4 cut(s)	382, 401, 456, 611
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	89, 309
BstV2I	GAAGAC	2 cut(s)	77, 402
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	4 cut(s)	114, 381, 683, 866
BtgI	CCRYGG	1 cut(s)	906
BtrI	CACGTC	1 cut(s)	838
BtsCI	GGATG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	3 cut(s)	505, 799, 937
CfoI	GCGC	2 cut(s)	156, 605
Cfr13I	GGNCC	4 cut(s)	30, 103, 301, 380
CsiI	ACCWGGT	1 cut(s)	611
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	2 cut(s)	679, 936
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	4 cut(s)	180, 195, 563, 582
DpnII	GATC	4 cut(s)	178, 193, 561, 580
EaeI	YGGCCR	2 cut(s)	112, 681
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	866
Eco31I	GGTCTC	1 cut(s)	756
Eco47I	GGWCC	3 cut(s)	30, 103, 301
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	3 cut(s)	21, 174, 860
EcoO109I	RGGNCCY	2 cut(s)	30, 301
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	382, 611
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	682, 939
FaiI	YATR	8 cut(s)	144, 152, 680, 770, 776, 875, 913, 937
FaqI	GGGAC	3 cut(s)	16, 314, 727
FatI	CATG	2 cut(s)	678, 935
Fnu4HI	GCNGC	2 cut(s)	78, 323
FokI	GGATG	1 cut(s)	656
Fsp4HI	GCNGC	2 cut(s)	78, 323
FspBI	CTAG	4 cut(s)	35, 476, 518, 918
GlaI	GCGC	2 cut(s)	155, 604
GluI	GCNGC	2 cut(s)	78, 323
HaeIII	GGCC	4 cut(s)	114, 381, 683, 866
HapII	CCGG	2 cut(s)	402, 457
HhaI	GCGC	2 cut(s)	156, 605
Hin1II	CATG	2 cut(s)	682, 939
Hin6I	GCGC	2 cut(s)	154, 603
HinP1I	GCGC	2 cut(s)	154, 603
HincII	GTYRAC	2 cut(s)	163, 618
HindII	GTYRAC	2 cut(s)	163, 618
HinfI	GANTC	3 cut(s)	49, 398, 731
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	402, 457
HphI	GGTGA	1 cut(s)	711
Hpy166II	GTNNAC	2 cut(s)	163, 618
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	7 cut(s)	23, 176, 191, 497, 699, 792, 824
Hpy8I	GTNNAC	2 cut(s)	163, 618
HpyAV	CCTTC	2 cut(s)	222, 878
HpyCH4III	ACNGT	3 cut(s)	124, 820, 910
HpyCH4IV	ACGT	3 cut(s)	349, 837, 890
HpyCH4V	TGCA	5 cut(s)	77, 473, 507, 877, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	479, 536, 803, 932
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	3 cut(s)	349, 837, 890
Hsp92II	CATG	2 cut(s)	682, 939
HspAI	GCGC	2 cut(s)	154, 603
KflI	GGGWCCC	2 cut(s)	30, 301
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	178, 193, 561, 580
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	4 cut(s)	87, 256, 745, 844
Lsp1109I	GCAGC	2 cut(s)	89, 309
LweI	GCATC	2 cut(s)	490, 517
MabI	ACCWGGT	1 cut(s)	611
MaeI	CTAG	4 cut(s)	35, 476, 518, 918
MaeII	ACGT	3 cut(s)	349, 837, 890
MaeIII	GTNAC	3 cut(s)	405, 728, 811
MalI	GATC	4 cut(s)	180, 195, 563, 582
MboI	GATC	4 cut(s)	178, 193, 561, 580
MboII	GAAGA	7 cut(s)	82, 173, 401, 404, 407, 443, 610
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	261, 742
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	9 cut(s)	40, 219, 250, 370, 452, 574, 745, 879, 899
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	3 cut(s)	43, 392, 725
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	9 cut(s)	277, 280, 328, 366, 565, 769, 820, 835, 856
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	3 cut(s)	39, 83, 162
Msp20I	TGGCCA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	2 cut(s)	402, 457
MspR9I	CCNGG	4 cut(s)	384, 403, 458, 613
MvaI	CCWGG	2 cut(s)	384, 613
MwoI	GCNNNNNNNGC	4 cut(s)	479, 536, 803, 932
NciI	CCSGG	2 cut(s)	403, 458
NdeII	GATC	4 cut(s)	178, 193, 561, 580
NlaIII	CATG	2 cut(s)	682, 939
NlaIV	GGNNCC	5 cut(s)	31, 32, 121, 302, 303
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	728
NspI	RCATGY	1 cut(s)	939
PaeI	GCATGC	1 cut(s)	939
PaeR7I	CTCGAG	3 cut(s)	21, 174, 860
PceI	AGGCCT	1 cut(s)	866
PciSI	GCTCTTC	1 cut(s)	593
PkrI	GCNGC	2 cut(s)	79, 324
PleI	GAGTC	3 cut(s)	43, 392, 725
PpsI	GAGTC	3 cut(s)	43, 392, 725
PpuMI	RGGWCCY	2 cut(s)	30, 301
Psp5II	RGGWCCY	2 cut(s)	30, 301
Psp6I	CCWGG	2 cut(s)	382, 611
PspGI	CCWGG	2 cut(s)	382, 611
PspN4I	GGNNCC	5 cut(s)	31, 32, 121, 302, 303
PspPI	GGNCC	4 cut(s)	30, 103, 301, 380
PspPPI	RGGWCCY	2 cut(s)	30, 301
PspXI	VCTCGAGB	1 cut(s)	860
PsrI	GAACNNNNNNTAC	2 cut(s)	804, 836
PstI	CTGCAG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	593
SaqAI	TTAA	3 cut(s)	39, 83, 162
SatI	GCNGC	2 cut(s)	78, 323
Sau3AI	GATC	4 cut(s)	178, 193, 561, 580
Sau96I	GGNCC	4 cut(s)	30, 103, 301, 380
SchI	GAGTC	3 cut(s)	43, 392, 725
ScrFI	CCNGG	4 cut(s)	384, 403, 458, 613
SduI	GDGCHC	2 cut(s)	261, 742
SexAI	ACCWGGT	1 cut(s)	611
SfaNI	GCATC	2 cut(s)	490, 517
SfcI	CTRYAG	1 cut(s)	75
Sfr274I	CTCGAG	3 cut(s)	21, 174, 860
SinI	GGWCC	3 cut(s)	30, 103, 301
SlaI	CTCGAG	3 cut(s)	21, 174, 860
SmlI	CTYRAG	5 cut(s)	21, 57, 174, 848, 860
SmoI	CTYRAG	5 cut(s)	21, 57, 174, 848, 860
SphI	GCATGC	1 cut(s)	939
Sse9I	AATT	9 cut(s)	40, 219, 250, 370, 452, 574, 745, 879, 899
SseBI	AGGCCT	1 cut(s)	866
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	4 cut(s)	35, 476, 518, 918
StuI	AGGCCT	1 cut(s)	866
StyD4I	CCNGG	4 cut(s)	382, 401, 456, 611
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	124, 820, 910
TaiI	ACGT	3 cut(s)	352, 840, 893
TaqI	TCGA	4 cut(s)	22, 175, 651, 861
TasI	AATT	9 cut(s)	40, 219, 250, 370, 452, 574, 745, 879, 899
TatI	WGTACW	1 cut(s)	488
Tru1I	TTAA	3 cut(s)	39, 83, 162
Tru9I	TTAA	3 cut(s)	39, 83, 162
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	2 cut(s)	77, 322
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	2 cut(s)	87, 660
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	3 cut(s)	30, 103, 301
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	939
XhoI	CTCGAG	3 cut(s)	21, 174, 860
XspI	CTAG	4 cut(s)	35, 476, 518, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.