Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Reverse (-)

68232742 .. 68235246

Gene Structure 2505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGCTTACCTCCAAGCAGTCGTAATTTGGATCGAGTGCATAAGCTGAAGAGTGCAATGACCAAGTTGACAAATCGGGTTCAAAAGGTAAGGGATGAACTTGAACAGCTACTTGACGATGACGATGATGATGACATGGCTGACCTTTACTTATCAAGAAAGTTGGTTGGGACTTCACCTGTGAGTGACTCTGGTGCTCCAAATTGGTCTTTCGCCTCTCCTACTATAACCATAGGCTCTAAAGTATCCAGAGCTAGCAGGGCAAGTGTAACAACAGTTCAGGAGGAGAATGACGTGGAGGAGCTTGAGATGTTGCTCGAGGCCTACTTTATGCAAATTGAAGGCACGTTGAATAAATTGACCACGATATGCACTAGAATTGCTGTTTCAGCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

132

Amino Acids

14.62

Weight (kDa)

4.75

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	83, 104, 341, 352
AjiI	CACGTC	1 cut(s)	295
AluBI	AGCT	5 cut(s)	6, 46, 109, 254, 304
AluI	AGCT	5 cut(s)	6, 46, 109, 254, 304
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	168
AsuNHI	GCTAGC	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	256
BfaI	CTAG	2 cut(s)	255, 375
BfuI	GTATCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	295
BmtI	GCTAGC	1 cut(s)	258
BplI	GAGNNNNNCTC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	299, 314
BshFI	GGCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	323
BspOI	GCTAGC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	63
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	256, 394
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 389
BstNSI	RCATGY	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	323
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	256, 394
CviAII	CATG	2 cut(s)	136, 393
CviJI	RGCY	8 cut(s)	6, 46, 109, 140, 237, 254, 304, 323
CviKI_1	RGCY	8 cut(s)	6, 46, 109, 140, 237, 254, 304, 323
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco147I	AGGCCT	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	317
FaeI	CATG	2 cut(s)	139, 396
FaiI	YATR	7 cut(s)	42, 137, 227, 233, 332, 370, 394
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	135, 392
FokI	GGATG	1 cut(s)	107
FspBI	CTAG	2 cut(s)	255, 375
HaeIII	GGCC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	139, 396
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HinfI	GANTC	1 cut(s)	188
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188III	TCNNGA	3 cut(s)	156, 249, 281
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	294, 347
HpyCH4V	TGCA	4 cut(s)	40, 56, 334, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 389
HpySE526I	ACGT	2 cut(s)	294, 347
Hsp92II	CATG	2 cut(s)	139, 396
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	202, 301
LpnPI	CCDG	5 cut(s)	177, 192, 244, 262, 266
MaeI	CTAG	2 cut(s)	255, 375
MaeII	ACGT	2 cut(s)	294, 347
MaeIII	GTNAC	2 cut(s)	185, 268
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	5 cut(s)	25, 202, 336, 356, 378
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	5 cut(s)	21, 226, 277, 292, 313
MwoI	GCNNNNNNNGC	2 cut(s)	260, 389
NdeII	GATC	1 cut(s)	31
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	2 cut(s)	139, 396
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	396
PaeI	GCATGC	1 cut(s)	396
PaeR7I	CTCGAG	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	323
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PspXI	VCTCGAGB	1 cut(s)	317
PsrI	GAACNNNNNNTAC	2 cut(s)	261, 293
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	199
Sfr274I	CTCGAG	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	305, 317
SmoI	CTYRAG	2 cut(s)	305, 317
SphI	GCATGC	1 cut(s)	396
Sse9I	AATT	5 cut(s)	25, 202, 336, 356, 378
SseBI	AGGCCT	1 cut(s)	323
SspMI	CTAG	2 cut(s)	255, 375
StuI	AGGCCT	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	2 cut(s)	297, 350
TaqI	TCGA	2 cut(s)	34, 318
TasI	AATT	5 cut(s)	25, 202, 336, 356, 378
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	111
XceI	RCATGY	1 cut(s)	396
XhoI	CTCGAG	1 cut(s)	317
XspI	CTAG	2 cut(s)	255, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.