Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

6169356 .. 6173789

Gene Structure 4434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG031300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGATTCTTTTAGACATTCTTGCAATCCATTTGAATCTGCAGATTAGTAGCCGCAATTTGGATAGGGTTCGTAAATTGAAAAGTGCAATGACAAGGTTGACTGCACGGGTCCAAAAGGTGAGGGATGAGCTCGAGCAGCTGCTGGATGATGATGATGATATGGCCGACCTTTACTTGTCAAGAAAGTTGGTGGGTGCATGTTCACCAGTTAGTGCCTCTGGTCCTCCCAATTGGTATCCTGCCTCCCCTACCATAGGCTCAAAAATATCACGGGCAAGTAGAGCAAGTATGATAACTGTTCGTGGAGATGAGAATGACGTTGAGGAACTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGCACCTTGAACAAGTTAGCTACGCTGCGTGAATATATTGATGATACGGAGGATTACATAAATATTCAGCTTGATAACCATAGGAATCAGTTAATTCAGCTTGAGCTTTTTCTTAGTTCTGGAACTGTTACCTTATCCATATATTCTTTGGTGGCTGGAATTTTTGGCATGAATATCCCATATACGTGGAACGATGGTCATGGATACATGTTTAAATGGGTTTGCATTGTCACCGGAATAGTATGTTTCTTTGTTTTCATAGTAATTGTAGCATATGCTCGCCACAAAGGGTTGGTTGGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

223

Amino Acids

25.14

Weight (kDa)

5.21

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	103 - 150	2.8e-08	Magnesium transporter MRS2-like
CorA	PF01544	111 - 211	1.7e-08	CorA-like Mg2+ transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	525
AfiI	CCNNNNNNNGG	2 cut(s)	58, 254
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	4 cut(s)	34, 79, 332, 376
AluBI	AGCT	6 cut(s)	130, 139, 386, 436, 466, 472
AluI	AGCT	6 cut(s)	130, 139, 386, 436, 466, 472
Alw21I	GWGCWC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	136, 139, 391
ApoI	RAATTY	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	109, 221
AsuHPI	GGTGA	3 cut(s)	130, 195, 589
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	109, 221
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	126, 148, 378
BccI	CCATC	2 cut(s)	359, 554
BciVI	GTATCC	2 cut(s)	246, 563
BfmI	CTRYAG	1 cut(s)	38
BfuI	GTATCC	2 cut(s)	246, 563
BisI	GCNGC	4 cut(s)	52, 137, 140, 392
BlsI	GCNGC	4 cut(s)	53, 138, 141, 393
Bme18I	GGWCC	2 cut(s)	109, 221
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	109, 221
BmiI	GGNNCC	2 cut(s)	110, 370
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 254
Bse1I	ACTGG	2 cut(s)	206, 345
Bse3DI	GCAATG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	130, 151
BseLI	CCNNNNNNNGG	2 cut(s)	58, 254
BseMI	GCAATG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	206, 345
BseXI	GCAGC	3 cut(s)	126, 148, 378
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	58, 254
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	665
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	164
BspLI	GGNNCC	2 cut(s)	110, 370
BspMAI	CTGCAG	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	206, 345
BssMI	GATC	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	298, 493
BstBAI	YACGTR	1 cut(s)	552
BstC8I	GCNNGC	1 cut(s)	646
BstDEI	CTNAG	1 cut(s)	479
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	130, 151
BstKTI	GATC	1 cut(s)	668
BstMBI	GATC	1 cut(s)	665
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 281
BstNSI	RCATGY	2 cut(s)	201, 577
BstSFI	CTRYAG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	126, 148, 378
BstXI	CCANNNNNNTGG	1 cut(s)	552
BsuI	GTATCC	2 cut(s)	246, 563
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	130, 151
Cac8I	GCNNGC	1 cut(s)	646
CaiI	CAGNNNCTG	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	109, 221
CviAII	CATG	4 cut(s)	198, 535, 566, 574
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	1 cut(s)	667
DpnII	GATC	1 cut(s)	665
DraI	TTTAAA	1 cut(s)	580
EaeI	YGGCCR	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	109, 221
Eco53kI	GAGCTC	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	4 cut(s)	201, 538, 569, 577
FatI	CATG	4 cut(s)	197, 534, 565, 573
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	4 cut(s)	52, 137, 140, 392
FokI	GGATG	2 cut(s)	137, 158
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	4 cut(s)	52, 137, 140, 392
GluI	GCNGC	4 cut(s)	52, 137, 140, 392
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	600
Hin1II	CATG	4 cut(s)	201, 538, 569, 577
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	3 cut(s)	4, 34, 451
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	3 cut(s)	130, 195, 589
Hpy166II	GTNNAC	2 cut(s)	99, 203
Hpy188III	TCNNGA	3 cut(s)	180, 486, 669
Hpy8I	GTNNAC	2 cut(s)	99, 203
HpyCH4III	ACNGT	2 cut(s)	298, 493
HpyCH4IV	ACGT	2 cut(s)	318, 551
HpyCH4V	TGCA	7 cut(s)	23, 40, 86, 104, 197, 358, 591
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 281
HpyF3I	CTNAG	1 cut(s)	479
HpySE526I	ACGT	2 cut(s)	318, 551
Hsp92II	CATG	4 cut(s)	201, 538, 569, 577
Kzo9I	GATC	1 cut(s)	665
LpnPI	CCDG	8 cut(s)	128, 204, 219, 252, 326, 471, 507, 613
Lsp1109I	GCAGC	3 cut(s)	126, 148, 378
MaeII	ACGT	2 cut(s)	318, 551
MaeIII	GTNAC	3 cut(s)	336, 493, 595
MalI	GATC	1 cut(s)	667
MboI	GATC	1 cut(s)	665
MfeI	CAATTG	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	6 cut(s)	55, 74, 229, 459, 525, 630
MmeI	TCCRAC	1 cut(s)	643
MnlI	CCTC	7 cut(s)	114, 226, 234, 253, 316, 337, 409
MseI	TTAA	2 cut(s)	458, 579
MslI	CAYNNNNRTG	1 cut(s)	550
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	1 cut(s)	600
MunI	CAATTG	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	136, 281
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	1 cut(s)	665
NlaIII	CATG	4 cut(s)	201, 538, 569, 577
NlaIV	GGNNCC	2 cut(s)	110, 370
NmuCI	GTSAC	1 cut(s)	595
NspI	RCATGY	2 cut(s)	201, 577
PaeR7I	CTCGAG	1 cut(s)	131
PciI	ACATGT	1 cut(s)	573
PfeI	GAWTC	3 cut(s)	4, 34, 451
PkrI	GCNGC	4 cut(s)	53, 138, 141, 393
Ppu21I	YACGTR	1 cut(s)	552
PscI	ACATGT	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	110, 370
PspPI	GGNCC	2 cut(s)	109, 221
PspXI	VCTCGAGB	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	42
PstNI	CAGNNNCTG	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	550
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	458, 579
SatI	GCNGC	4 cut(s)	52, 137, 140, 392
Sau3AI	GATC	1 cut(s)	665
Sau96I	GGNCC	2 cut(s)	109, 221
SduI	GDGCHC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	131
SinI	GGWCC	2 cut(s)	109, 221
SlaI	CTCGAG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	550
SmlI	CTYRAG	2 cut(s)	131, 467
SmoI	CTYRAG	2 cut(s)	131, 467
Sse9I	AATT	6 cut(s)	55, 74, 229, 459, 525, 630
SsiI	CCGC	1 cut(s)	52
SspI	AATATT	1 cut(s)	430
SstI	GAGCTC	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	298, 493
TaiI	ACGT	2 cut(s)	321, 554
TaqI	TCGA	1 cut(s)	132
TasI	AATT	6 cut(s)	55, 74, 229, 459, 525, 630
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	3 cut(s)	4, 34, 451
Tru1I	TTAA	2 cut(s)	458, 579
Tru9I	TTAA	2 cut(s)	458, 579
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	3 cut(s)	136, 139, 391
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	551, 613
TspGWI	ACGGA	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	109, 221
XagI	CCTNNNNNAGG	1 cut(s)	252
XapI	RAATTY	1 cut(s)	525
XceI	RCATGY	2 cut(s)	201, 577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.