Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005697.1

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

67277 .. 72134

Gene Structure 4858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005697.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggtagtccgtacattggtaatgcgcaccaatcttcttccatccgcttggggtgatgccatatcgcatgcaaccatgctaattcgtctacgacctaccgccactcaatgtacctatgcgttacagctagtgactggtctgtccccactatgtctcatcttgatccctattaaagtaacgagatcacacaattatgctgcaaacatgcctgcaaggaaggacgccatggccccagctaggatgcgtgggaggcccgtaggttcgaaggatactttggcacattccaatcctttaatcatcaagactcaaaatcattctcatgagtatcttccagatctaactatacggccaccaaatccaacactccaaccagacaggatcatcaaaaccctgatcagcagtcgtaatttggatcgggtgcgtaagctgaagagtgcaataaccaagttgacaaatcgggttcaaaaggtaagggatgaacttgaacagctacttgacgatgacgatgacatggccgacctttacttatcaagaaagttggttgggacttcacctgtgagtgactctggtgctccaaattggtctttcgcctctcctactataaccataggctctaaagtatccagagctagcagggcaagtgtaacaacagttcaggaggagaatgacgtggatgagcttgagatgttgctcgattttcttaggatttgtactcttgttagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

241

Amino Acids

26.79

Weight (kDa)

9.51

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
Acc16I	TGCGCA	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	88
AciI	CCGC	2 cut(s)	45, 99
AclWI	GGATC	3 cut(s)	157, 386, 420
AcoI	YGGCCR	2 cut(s)	347, 513
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	3 cut(s)	13, 112, 712
AfiI	CCNNNNNNNGG	2 cut(s)	16, 237
AgsI	TTSAA	2 cut(s)	464, 485
AjiI	CACGTC	1 cut(s)	670
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	6 cut(s)	127, 236, 427, 490, 629, 679
AluI	AGCT	6 cut(s)	127, 236, 427, 490, 629, 679
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	3 cut(s)	157, 386, 420
AoxI	GGCC	4 cut(s)	228, 251, 347, 513
ApeKI	GCWGC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	229, 252
AsuHPI	GGTGA	2 cut(s)	65, 543
AsuII	TTCGAA	1 cut(s)	263
AsuNHI	GCTAGC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	362
BciVI	GTATCC	2 cut(s)	262, 631
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	3 cut(s)	128, 237, 630
BfuI	GTATCC	2 cut(s)	262, 631
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmgBI	CACGTC	1 cut(s)	670
BmgT120I	GGNCC	2 cut(s)	229, 252
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	2 cut(s)	46, 231
BmtI	GCTAGC	1 cut(s)	633
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 237
Bse1I	ACTGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	4 cut(s)	41, 246, 481, 679
BseLI	CCNNNNNNNGG	2 cut(s)	16, 237
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	232
BshFI	GGCC	4 cut(s)	230, 253, 349, 515
BsiHKAI	GWGCWC	1 cut(s)	574
BslFI	GGGAC	2 cut(s)	127, 559
BslI	CCNNNNNNNGG	2 cut(s)	16, 237
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	127, 559
BsnI	GGCC	4 cut(s)	230, 253, 349, 515
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	6 cut(s)	162, 182, 334, 378, 393, 412
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	2 cut(s)	45, 99
BspANI	GGCC	4 cut(s)	230, 253, 349, 515
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	231
BspOI	GCTAGC	1 cut(s)	633
BspPI	GGATC	3 cut(s)	157, 386, 420
BspT104I	TTCGAA	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	6 cut(s)	162, 182, 334, 378, 393, 412
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	1 cut(s)	425
BstACI	GRCGYC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	69, 210, 631
BstDEI	CTNAG	1 cut(s)	701
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	4 cut(s)	41, 246, 481, 679
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	6 cut(s)	165, 185, 337, 381, 396, 415
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	6 cut(s)	162, 182, 334, 378, 393, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 635
BstNSI	RCATGY	2 cut(s)	71, 208
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	334
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	334
BsuI	GTATCC	2 cut(s)	262, 631
BsuRI	GGCC	4 cut(s)	230, 253, 349, 515
BtgI	CCRYGG	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	670
BtsCI	GGATG	4 cut(s)	41, 246, 481, 679
Cac8I	GCNNGC	3 cut(s)	69, 210, 631
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	229, 252
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	3 cut(s)	12, 111, 711
CviAII	CATG	6 cut(s)	68, 76, 205, 226, 320, 511
CviQI	GTAC	3 cut(s)	12, 111, 711
DdeI	CTNAG	1 cut(s)	701
DpnI	GATC	6 cut(s)	164, 184, 336, 380, 395, 414
DpnII	GATC	6 cut(s)	162, 182, 334, 378, 393, 412
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	2 cut(s)	347, 513
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	6 cut(s)	71, 79, 208, 229, 323, 514
FaqI	GGGAC	2 cut(s)	127, 559
FatI	CATG	6 cut(s)	67, 75, 204, 225, 319, 510
FbaI	TGATCA	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	4 cut(s)	28, 253, 488, 686
Fsp4HI	GCNGC	1 cut(s)	198
FspAI	RTGCGCAY	1 cut(s)	26
FspBI	CTAG	3 cut(s)	128, 237, 630
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	198
GsaI	CCCAGC	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	230, 253, 349, 515
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	6 cut(s)	71, 79, 208, 229, 323, 514
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	2 cut(s)	304, 563
HphI	GGTGA	2 cut(s)	65, 543
Hpy166II	GTNNAC	2 cut(s)	89, 450
Hpy188III	TCNNGA	7 cut(s)	160, 301, 320, 332, 531, 624, 656
Hpy8I	GTNNAC	2 cut(s)	89, 450
HpyAV	CCTTC	2 cut(s)	211, 259
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	4 cut(s)	71, 200, 212, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 635
HpyF3I	CTNAG	1 cut(s)	701
HpySE526I	ACGT	1 cut(s)	669
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	6 cut(s)	71, 79, 208, 229, 323, 514
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	6 cut(s)	162, 182, 334, 378, 393, 412
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	46, 231
MaeI	CTAG	3 cut(s)	128, 237, 630
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	5 cut(s)	120, 130, 175, 560, 643
MalI	GATC	6 cut(s)	164, 184, 336, 380, 395, 414
MboI	GATC	6 cut(s)	162, 182, 334, 378, 393, 412
MboII	GAAGA	4 cut(s)	26, 29, 320, 442
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	4 cut(s)	81, 190, 406, 577
MlyI	GAGTC	2 cut(s)	298, 557
MmeI	TCCRAC	2 cut(s)	383, 391
MnlI	CCTC	3 cut(s)	243, 601, 652
MseI	TTAA	3 cut(s)	171, 293, 724
MslI	CAYNNNNRTG	2 cut(s)	192, 318
MwoI	GCNNNNNNNGC	2 cut(s)	250, 635
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	6 cut(s)	162, 182, 334, 378, 393, 412
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	6 cut(s)	71, 79, 208, 229, 323, 514
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	130, 560
NsbI	TGCGCA	1 cut(s)	26
NspI	RCATGY	2 cut(s)	71, 208
NspV	TTCGAA	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	71
PagI	TCATGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	2 cut(s)	298, 557
PpsI	GAGTC	2 cut(s)	298, 557
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	2 cut(s)	229, 252
PsrI	GAACNNNNNNTAC	2 cut(s)	636, 668
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	3 cut(s)	13, 112, 712
RsaNI	GTAC	3 cut(s)	12, 111, 711
RseI	CAYNNNNRTG	2 cut(s)	192, 318
SaqAI	TTAA	3 cut(s)	171, 293, 724
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	6 cut(s)	162, 182, 334, 378, 393, 412
Sau96I	GGNCC	2 cut(s)	229, 252
SchI	GAGTC	2 cut(s)	298, 557
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	2 cut(s)	46, 231
SfuI	TTCGAA	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	192, 318
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	4 cut(s)	81, 190, 406, 577
SsiI	CCGC	2 cut(s)	45, 99
SspMI	CTAG	3 cut(s)	128, 237, 630
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	2 cut(s)	263, 693
TasI	AATT	4 cut(s)	81, 190, 406, 577
TatI	WGTACW	1 cut(s)	710
Tru1I	TTAA	3 cut(s)	171, 293, 724
Tru9I	TTAA	3 cut(s)	171, 293, 724
TseFI	GTSAC	2 cut(s)	130, 560
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	2 cut(s)	130, 560
TspDTI	ATGAA	1 cut(s)	492
XceI	RCATGY	2 cut(s)	71, 208
XmiI	GTMKAC	1 cut(s)	88
XspI	CTAG	3 cut(s)	128, 237, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.