Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

39164621 .. 39167460

Gene Structure 2840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G027490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATCCCGATTTCAAATTTTGGGATTTCGATTTCGATGTCGTTGTGTTAATTGATTTTCCATTTGAATTCCGGTCATTAGAAGTTGCACTAGAAGCTATTTGTACTTCTCTTGATGCTTGCACAAGAGAACTAGAGAGTGATGCTTATCCAGCTTTAGATGAGCTTACCTCCAAGATCAGCAGTCGTAATTTGGATCGGGTGCATAAGCTGAAGAGTGCAATGACCAAGTTGACAAATCGGGTTCAAAAGGTAAGGGATGAACTTGAACAGCTACTTGACGATGACGATGATGATGACATGGCCGACCTTTACTTATCAAGAAAGTTGGTTGGGAATTCACCTGTGAGTGACTCTGGTGCTCCAAATTGGTCTTTCGCCTCTCCTACTATAACCATAGGCTCTAAAGTATCCAGAGCTAGCAGGGCAAGTGTAACAACAGTTCAGGAGGAGAATGACGTGGAGGAGCTTGACATGTTGCTCGAGGCCTACTTTATGCAAATTGAAGGCACGTTGAATAAATTGACCACGATATGCACTAGAACTGCTCTGCGTGAATACATTGATGACACAGAGGATTACATTAACATCCAGCTTGACAATCATCGGAATCAGCTAATTCAGCTAGAGCTATTTCTGAGTTCCAGAACTGTTTGTGTGTCTATATATTCTTTGGTGGCTGCAATATTTGGCATGAACATTCCATATACATGGAACGAAAATCATGAGCATGTATTCAAATGGGTATTATTTATTGTGCTGGTCACCATGTATTTTGAAGTAGTTTTTATCATTGCTTTTATTTATTTATCTTACAGAAGCATGAACAACTATTCCTTCTTTTGGCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

284

Amino Acids

32.96

Weight (kDa)

4.43

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	21 - 110	1.1e-11	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	12, 204
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	3 cut(s)	17, 68, 337
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	843
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	8 cut(s)	16, 68, 248, 269, 506, 517, 739, 779
AjiI	CACGTC	1 cut(s)	460
AloI	GAACNNNNNNTCC	2 cut(s)	818, 850
Alw21I	GWGCWC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	12, 204
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	3 cut(s)	303, 486, 845
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	3 cut(s)	17, 68, 337
AsuHPI	GGTGA	2 cut(s)	333, 757
AsuNHI	GCTAGC	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	667
BciVI	GTATCC	1 cut(s)	421
BfaI	CTAG	5 cut(s)	92, 134, 420, 540, 626
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	1 cut(s)	681
BlsI	GCNGC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	482
BmgBI	CACGTC	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	106, 133
BmtI	GCTAGC	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	848
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	843
Bse3DI	GCAATG	2 cut(s)	228, 792
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	848
BseGI	GGATG	2 cut(s)	265, 588
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	843
BseMI	GCAATG	2 cut(s)	228, 792
BseMII	CTCAG	1 cut(s)	629
BseRI	GAGGAG	2 cut(s)	464, 479
BseXI	GCAGC	1 cut(s)	667
BshFI	GGCC	3 cut(s)	305, 488, 847
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	843
BsnI	GGCC	3 cut(s)	305, 488, 847
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	4, 177, 196
BspANI	GGCC	3 cut(s)	305, 488, 847
BspCNI	CTCAG	1 cut(s)	630
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	12, 204
BsrDI	GCAATG	2 cut(s)	228, 792
BssECI	CCNNGG	1 cut(s)	848
BssMI	GATC	3 cut(s)	4, 177, 196
BssT1I	CCWWGG	1 cut(s)	848
Bst4CI	ACNGT	2 cut(s)	442, 652
Bst6I	CTCTTC	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	121, 421
BstDEI	CTNAG	1 cut(s)	638
BstEII	GGTNACC	1 cut(s)	763
BstF5I	GGATG	2 cut(s)	265, 588
BstKTI	GATC	3 cut(s)	7, 180, 199
BstMBI	GATC	3 cut(s)	4, 177, 196
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 152, 425, 622
BstNSI	RCATGY	2 cut(s)	478, 734
BstPI	GGTNACC	1 cut(s)	763
BstV1I	GCAGC	1 cut(s)	667
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	711
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	3 cut(s)	305, 488, 847
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	2 cut(s)	265, 588
Cac8I	GCNNGC	2 cut(s)	121, 421
CciI	TCATGA	1 cut(s)	724
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	8 cut(s)	301, 475, 694, 711, 725, 731, 769, 823
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	638
DpnI	GATC	3 cut(s)	6, 179, 198
DpnII	GATC	3 cut(s)	4, 177, 196
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	848
Eco147I	AGGCCT	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	482
Eco91I	GGTNACC	1 cut(s)	763
EcoO65I	GGTNACC	1 cut(s)	763
EcoRI	GAATTC	2 cut(s)	68, 337
EcoT14I	CCWWGG	1 cut(s)	848
ErhI	CCWWGG	1 cut(s)	848
FaeI	CATG	8 cut(s)	304, 478, 697, 714, 728, 734, 772, 826
FatI	CATG	8 cut(s)	300, 474, 693, 710, 724, 730, 768, 822
Fnu4HI	GCNGC	1 cut(s)	681
FokI	GGATG	2 cut(s)	272, 575
Fsp4HI	GCNGC	1 cut(s)	681
FspBI	CTAG	5 cut(s)	92, 134, 420, 540, 626
GluI	GCNGC	1 cut(s)	681
HaeIII	GGCC	3 cut(s)	305, 488, 847
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	8 cut(s)	304, 478, 697, 714, 728, 734, 772, 826
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	2 cut(s)	353, 610
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	2 cut(s)	333, 757
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	2 cut(s)	609, 639
Hpy188III	TCNNGA	7 cut(s)	8, 113, 321, 414, 446, 645, 725
Hpy8I	GTNNAC	1 cut(s)	234
HpyAV	CCTTC	2 cut(s)	500, 847
HpyCH4III	ACNGT	2 cut(s)	442, 652
HpyCH4IV	ACGT	2 cut(s)	459, 512
HpyCH4V	TGCA	7 cut(s)	89, 123, 205, 221, 499, 537, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 152, 425, 622
HpyF3I	CTNAG	1 cut(s)	638
HpySE526I	ACGT	2 cut(s)	459, 512
Hsp92II	CATG	8 cut(s)	304, 478, 697, 714, 728, 734, 772, 826
Kzo9I	GATC	3 cut(s)	4, 177, 196
LmnI	GCTCC	2 cut(s)	367, 466
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	2 cut(s)	106, 133
MaeI	CTAG	5 cut(s)	92, 134, 420, 540, 626
MaeII	ACGT	2 cut(s)	459, 512
MaeIII	GTNAC	3 cut(s)	350, 433, 763
MalI	GATC	3 cut(s)	6, 179, 198
MboI	GATC	3 cut(s)	4, 177, 196
MboII	GAAGA	1 cut(s)	226
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	9 cut(s)	17, 51, 68, 190, 337, 367, 501, 521, 618
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	6 cut(s)	181, 391, 442, 457, 478, 568
MseI	TTAA	2 cut(s)	50, 585
MslI	CAYNNNNRTG	2 cut(s)	709, 729
MspI	CCGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	4 cut(s)	95, 152, 425, 622
NdeII	GATC	3 cut(s)	4, 177, 196
NheI	GCTAGC	1 cut(s)	419
NlaIII	CATG	8 cut(s)	304, 478, 697, 714, 728, 734, 772, 826
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	350, 763
NspI	RCATGY	2 cut(s)	478, 734
PaeR7I	CTCGAG	1 cut(s)	482
PagI	TCATGA	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	488
PciI	ACATGT	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	1 cut(s)	682
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PscI	ACATGT	1 cut(s)	474
PspEI	GGTNACC	1 cut(s)	763
PspN4I	GGNNCC	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	482
PsrI	GAACNNNNNNTAC	2 cut(s)	426, 458
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	2 cut(s)	709, 729
SaqAI	TTAA	2 cut(s)	50, 585
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	3 cut(s)	4, 177, 196
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	2 cut(s)	106, 133
Sfr274I	CTCGAG	1 cut(s)	482
SlaI	CTCGAG	1 cut(s)	482
SmiMI	CAYNNNNRTG	2 cut(s)	709, 729
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	9 cut(s)	17, 51, 68, 190, 337, 367, 501, 521, 618
SseBI	AGGCCT	1 cut(s)	488
SspI	AATATT	1 cut(s)	687
SspMI	CTAG	5 cut(s)	92, 134, 420, 540, 626
StuI	AGGCCT	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	848
TaaI	ACNGT	2 cut(s)	442, 652
TaiI	ACGT	2 cut(s)	462, 515
TaqI	TCGA	3 cut(s)	30, 36, 483
TasI	AATT	9 cut(s)	17, 51, 68, 190, 337, 367, 501, 521, 618
TatI	WGTACW	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	2 cut(s)	50, 585
Tru9I	TTAA	2 cut(s)	50, 585
TseFI	GTSAC	2 cut(s)	350, 763
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	2 cut(s)	350, 763
TspDTI	ATGAA	3 cut(s)	276, 710, 839
XapI	RAATTY	3 cut(s)	17, 68, 337
XceI	RCATGY	2 cut(s)	478, 734
XhoI	CTCGAG	1 cut(s)	482
XspI	CTAG	5 cut(s)	92, 134, 420, 540, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.