Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

5872327 .. 5876448

Gene Structure 4122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGCAATCGTCGGTTGCCGCCGAGGGAGAGTTTCTCAAGTCGGAGATGTTCTTCGTCGACGACGCCATGGATGACAGCCACGGAGAGAAGCGAACAAGCTCATCGGAGAGAGAGAAGTTTTGTTGTATTGGTCGTAGAAATGTTCCGAAGACTTTGGGTGGTCTCGGATGAGGATCCAACTGTCGGATCATCATTTAATTTTGAGAAATTGATCCTAGAAGCGATTCATGAGAATCTGACCGTTGGATCATTGTATAATTATTTTCCATTTGAATTCCGGTCATTAGAAGTTGCACTAGAAGCTATTTGTACTTCTCTTGATGCTTGCACAAGAGAACTAGAGAGTGATGCTTATCCAGCTTTAGATGAGCTTACCTCCAAGATCAGCAGTCGTAATTTGGATCGGGTGCATAAGCTGAAGAGTGCAATGACCAAGTTGACAAATCGGGTTCAAAAGGTAAGGGATGAACTTGAACAGCTACTTGACGATGACGATGATGATGACATGGCCGACCTTTACTTATCAAGAAAGTTGGTTGGGACTTCACCTGTGAGTGACTCTGGTGCTCCAAATTGGTCTTTCGCCTCTCCTACTATAACCATAGGCTCTAAAGTATCCAGAGCTAGCAGGGCAAGTGTAACAACAGTTCAGGAGGAGAATGACGTGGAGGAGCTTGAGATGTTGCTCGAGGCCTACTTTATGCAAATTGAAGGCACGTTGAATAAATTGACCACGATATGCACTAGAACTGCTCTGCGTGAATACATTGATGACACAGAGGATTACATTAACATCCAGCTTGACAATCATCGGAATCAGCTAATTCAGCTAGAGCTGTTTCTGAGTTCCAGAACTGTTTGTGTGTCTATATATTCTTTGGTGGCTGCAATATTTGGCATGAACATTCCATATACATGGAACGAAAATCATGAGCATGTATTCAAATGGTTAATTACGAAGTGGGCTGATGGTTCACTGTTTATGTTAGAGAACTCTCTATCTAATGTTTATCGGTCTCTCACCCCCCACCCCCCCAAAACCCTTCTCCTCCCCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

353

Amino Acids

40.43

Weight (kDa)

5.01

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	70 - 178	2.9e-12	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	59
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	6 cut(s)	170, 183, 196, 208, 256, 411
AcoI	YGGCCR	1 cut(s)	510
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	6 cut(s)	275, 455, 476, 713, 724, 946
AjiI	CACGTC	1 cut(s)	667
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	2 cut(s)	169, 1023
AlwI	GGATC	6 cut(s)	170, 183, 196, 208, 256, 411
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	2 cut(s)	510, 693
ApeKI	GCWGC	1 cut(s)	887
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	540, 1015
AsuNHI	GCTAGC	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	689
BamHI	GGATCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	1 cut(s)	874
BccI	CCATC	1 cut(s)	965
BciVI	GTATCC	1 cut(s)	628
BcoDI	GTCTC	2 cut(s)	169, 1023
BfaI	CTAG	7 cut(s)	218, 299, 341, 627, 747, 833, 1060
BfuI	GTATCC	1 cut(s)	628
BisI	GCNGC	2 cut(s)	20, 888
BlsI	GCNGC	2 cut(s)	21, 889
BmeT110I	CYCGRG	1 cut(s)	689
BmgBI	CACGTC	1 cut(s)	667
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	2 cut(s)	313, 340
BmtI	GCTAGC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	157
BplI	GAGNNNNNCTC	4 cut(s)	20, 52, 362, 394
BpuEI	CTTGAG	2 cut(s)	22, 698
BsaBI	GATNNNNATC	2 cut(s)	174, 354
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	2 cut(s)	169, 1023
BsaJI	CCNNGG	3 cut(s)	23, 68, 81
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	2 cut(s)	174, 354
BseDI	CCNNGG	3 cut(s)	23, 68, 81
BseGI	GGATG	4 cut(s)	78, 175, 472, 795
BseJI	GATNNNNATC	2 cut(s)	174, 354
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	836
BseRI	GAGGAG	3 cut(s)	671, 686, 1040
BseXI	GCAGC	1 cut(s)	874
BshFI	GGCC	2 cut(s)	512, 695
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	169, 1023
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	512, 695
Bso31I	GGTCTC	2 cut(s)	169, 1023
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	6 cut(s)	175, 188, 213, 248, 384, 403
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	512, 695
BspCNI	CTCAG	1 cut(s)	837
BspHI	TCATGA	2 cut(s)	229, 931
BspLI	GGNNCC	1 cut(s)	177
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	6 cut(s)	170, 183, 196, 208, 256, 411
BspTNI	GGTCTC	2 cut(s)	169, 1023
BsrDI	GCAATG	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	23, 68, 81
BssMI	GATC	6 cut(s)	175, 188, 213, 248, 384, 403
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	5 cut(s)	184, 244, 649, 859, 981
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	328, 628
BstDEI	CTNAG	1 cut(s)	845
BstDSI	CCRYGG	2 cut(s)	68, 81
BstF5I	GGATG	4 cut(s)	78, 175, 472, 795
BstKTI	GATC	6 cut(s)	178, 191, 216, 251, 387, 406
BstMAI	GTCTC	2 cut(s)	169, 1023
BstMBI	GATC	6 cut(s)	175, 188, 213, 248, 384, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 359, 632, 829
BstNSI	RCATGY	1 cut(s)	941
BstV1I	GCAGC	1 cut(s)	874
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	918
BstYI	RGATCY	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	628
BsuRI	GGCC	2 cut(s)	512, 695
BtgI	CCRYGG	2 cut(s)	68, 81
BtrI	CACGTC	1 cut(s)	667
BtsCI	GGATG	4 cut(s)	78, 175, 472, 795
BtsIMutI	CAGTG	1 cut(s)	977
Cac8I	GCNNGC	2 cut(s)	328, 628
CciI	TCATGA	2 cut(s)	229, 931
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	7 cut(s)	69, 230, 508, 901, 918, 932, 938
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	1 cut(s)	845
DpnI	GATC	6 cut(s)	177, 190, 215, 250, 386, 405
DpnII	GATC	6 cut(s)	175, 188, 213, 248, 384, 403
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	695
Eco31I	GGTCTC	2 cut(s)	169, 1023
Eco57I	CTGAAG	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	7 cut(s)	72, 233, 511, 904, 921, 935, 941
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	7 cut(s)	68, 229, 507, 900, 917, 931, 937
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	20, 888
FokI	GGATG	4 cut(s)	85, 182, 479, 782
Fsp4HI	GCNGC	2 cut(s)	20, 888
FspBI	CTAG	7 cut(s)	218, 299, 341, 627, 747, 833, 1060
GluI	GCNGC	2 cut(s)	20, 888
HaeIII	GGCC	2 cut(s)	512, 695
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	7 cut(s)	72, 233, 511, 904, 921, 935, 941
HincII	GTYRAC	2 cut(s)	60, 441
HindII	GTYRAC	2 cut(s)	60, 441
HinfI	GANTC	4 cut(s)	226, 235, 560, 817
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	540, 1015
Hpy166II	GTNNAC	3 cut(s)	60, 441, 977
Hpy188I	TCNGA	8 cut(s)	45, 108, 149, 169, 188, 240, 816, 846
Hpy188III	TCNNGA	7 cut(s)	230, 320, 528, 621, 653, 852, 932
Hpy8I	GTNNAC	3 cut(s)	60, 441, 977
Hpy99I	CGWCG	4 cut(s)	15, 61, 64, 67
HpyAV	CCTTC	2 cut(s)	707, 1055
HpyCH4III	ACNGT	5 cut(s)	184, 244, 649, 859, 981
HpyCH4IV	ACGT	2 cut(s)	666, 719
HpyCH4V	TGCA	7 cut(s)	296, 330, 412, 428, 706, 744, 890
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 359, 632, 829
HpyF3I	CTNAG	1 cut(s)	845
HpySE526I	ACGT	2 cut(s)	666, 719
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	7 cut(s)	72, 233, 511, 904, 921, 935, 941
Kzo9I	GATC	6 cut(s)	175, 188, 213, 248, 384, 403
LmnI	GCTCC	2 cut(s)	574, 673
LpnPI	CCDG	9 cut(s)	293, 372, 549, 564, 616, 634, 638, 812, 865
Lsp1109I	GCAGC	1 cut(s)	874
LweI	GCATC	2 cut(s)	313, 340
MaeI	CTAG	7 cut(s)	218, 299, 341, 627, 747, 833, 1060
MaeII	ACGT	2 cut(s)	666, 719
MaeIII	GTNAC	2 cut(s)	557, 640
MalI	GATC	6 cut(s)	177, 190, 215, 250, 386, 405
MboI	GATC	6 cut(s)	175, 188, 213, 248, 384, 403
MboII	GAAGA	3 cut(s)	45, 162, 433
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	571
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	4 cut(s)	23, 166, 203, 226
MnlI	CCTC	9 cut(s)	18, 166, 388, 598, 649, 664, 685, 775, 1061
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	3 cut(s)	198, 792, 953
MslI	CAYNNNNRTG	2 cut(s)	916, 936
MspI	CCGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	4 cut(s)	302, 359, 632, 829
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	6 cut(s)	175, 188, 213, 248, 384, 403
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	7 cut(s)	72, 233, 511, 904, 921, 935, 941
NlaIV	GGNNCC	1 cut(s)	177
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	557
NspI	RCATGY	1 cut(s)	941
PaeR7I	CTCGAG	1 cut(s)	689
PagI	TCATGA	2 cut(s)	229, 931
PceI	AGGCCT	1 cut(s)	695
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	226, 235, 817
PkrI	GCNGC	2 cut(s)	21, 889
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
PspN4I	GGNNCC	1 cut(s)	177
PspXI	VCTCGAGB	1 cut(s)	689
PsrI	GAACNNNNNNTAC	2 cut(s)	633, 665
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	2 cut(s)	916, 936
SalI	GTCGAC	1 cut(s)	58
SaqAI	TTAA	3 cut(s)	198, 792, 953
SatI	GCNGC	2 cut(s)	20, 888
Sau3AI	GATC	6 cut(s)	175, 188, 213, 248, 384, 403
SchI	GAGTC	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	313, 340
Sfr274I	CTCGAG	1 cut(s)	689
SgrDI	CGTCGACG	1 cut(s)	58
SlaI	CTCGAG	1 cut(s)	689
SmiMI	CAYNNNNRTG	2 cut(s)	916, 936
SmlI	CTYRAG	3 cut(s)	37, 677, 689
SmoI	CTYRAG	3 cut(s)	37, 677, 689
SseBI	AGGCCT	1 cut(s)	695
SsiI	CCGC	1 cut(s)	20
SspI	AATATT	1 cut(s)	894
SspMI	CTAG	7 cut(s)	218, 299, 341, 627, 747, 833, 1060
StuI	AGGCCT	1 cut(s)	695
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	5 cut(s)	184, 244, 649, 859, 981
TaiI	ACGT	2 cut(s)	669, 722
TaqI	TCGA	2 cut(s)	59, 690
TaqII	GACCGA	1 cut(s)	1005
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	3 cut(s)	226, 235, 817
Tru1I	TTAA	3 cut(s)	198, 792, 953
Tru9I	TTAA	3 cut(s)	198, 792, 953
TscAI	CASTG	1 cut(s)	984
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	1 cut(s)	887
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	3 cut(s)	218, 483, 917
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	984
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	941
XhoI	CTCGAG	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	7 cut(s)	218, 299, 341, 627, 747, 833, 1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.