Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Reverse (-)

18368789 .. 18375332

Gene Structure 6544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCGGTTCGAGATGAGACTCAAGCTCAGGCTAACAAGAAGACTGCGGCTTTGAGGTGTTGGATTTCATTGAACCAAGATGGCCAAGGAACCGTTTTGGATTTGGACAAGTATGCTATTATGCGGCGTGTTAACATTCACGCTCGAGATCTTCGGCTTCTTGATCCATTGCTCTCCTACCCTTCAACCATTTTGGGCAGAGAGAAAGTCATTGTTCTCAACTTGGAGCACATCAAAGCAATAATCACAGCAGAGGAGGTATTGCTCAGAGACCCATTTGATGATAATGTGTTGCCTATTGTTGAGGAGCTGCAAAGGCGGTTGCCTCCAGCAAGTGCCAATTTCAATGGCCTAGGGGAAGAAGAAGACTCCGGGCTACAAAAAGATGTCGAAACCAGTGAAGATGATGATTTTCCGTTTGAATTCCGGGCATTAGAAGTTGCACTAGAAGCTATTTGTACTTCCCTGGATGCTTGCACTAGTGAACTAGAGAGTGATGCTTATCCAGCTTTAGATGAGCTTACTTCCAAGATCAGCAGTCGTAATTTGGATCGGGTTCGTAAGCTGAAGAGTGCAATGACCAGGTTGACAAATCGGGTTCAAAAAGTAAGGGATGAACTCGAACAGCTTCTTGACGATGACGATGACATGGCCGATCTTTACTTATCAAGAAAGTTGGTTGGCACTTCACCTGTGAGTGACTCTGGTGCTCCAAATTGGTCTTTCACATCTCCTTCCATAACCATCGGCTCTAAAGTATCCAGAACCAGCAGGGCAAGTGTAACAACAATTCAGGAGGAGAATGACGTGGAGGAGCTTGAGATGTTGCTCGAGGCTTACTTTATGCAAATCGAAGGAACATTGAATAAATTGACCACGCTGCGCGAATACATTGATGACACAGAGGATTACATTAACATCCAGCTTGACAATCATCGGAATCAGCTAATTCAGCTAGAGCTTTTTCTGAGTTCTGGAACTGTTTGTGTGTCTATATACTCTTTGGTGGCTGCAATATTTGGCATGAACATTCCATATACATGGAATGAAAATCATGAGCACATGTTCAAATGGGTGGTAATTACAACAGGTATAGTGGGCGCATCGATTTTCTTGTTTATAGTTTCATATGCTCGGCACAAAGGTCTTGTGGGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

387

Amino Acids

43.48

Weight (kDa)

4.63

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	33 - 225	2.1e-26	Magnesium transporter MRS2-like
CorA	PF01544	262 - 373	5.5e-06	CorA-like Mg2+ transporter protein
MRS2-like	PF22099	265 - 313	2e-07	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	885
AciI	CCGC	4 cut(s)	5, 47, 124, 319
AclWI	GGATC	3 cut(s)	158, 558, 1149
AcoI	YGGCCR	2 cut(s)	82, 651
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	460
AflIII	ACRYGT	1 cut(s)	1062
AgsI	TTSAA	7 cut(s)	73, 186, 346, 422, 602, 865, 1069
AhlI	ACTAGT	1 cut(s)	479
AjiI	CACGTC	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	465, 581
Alw21I	GWGCWC	3 cut(s)	231, 712, 1062
Alw26I	GTCTC	2 cut(s)	11, 264
AlwI	GGATC	3 cut(s)	158, 558, 1149
Ama87I	CYCGRG	2 cut(s)	144, 830
AoxI	GGCC	3 cut(s)	82, 349, 651
ApeKI	GCWGC	3 cut(s)	310, 880, 1010
ApoI	RAATTY	1 cut(s)	422
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
Asp700I	GAANNNNTTC	1 cut(s)	627
AspA2I	CCTAGG	1 cut(s)	352
AspLEI	GCGC	2 cut(s)	885, 1103
AsuC2I	CCSGG	2 cut(s)	373, 428
AsuHPI	GGTGA	1 cut(s)	681
AvaI	CYCGRG	2 cut(s)	144, 830
AvrII	CCTAGG	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	1154
BbsI	GAAGAC	2 cut(s)	47, 372
Bbv12I	GWGCWC	3 cut(s)	231, 712, 1062
BbvI	GCAGC	3 cut(s)	297, 867, 997
BccI	CCATC	2 cut(s)	74, 752
BciT130I	CCWGG	2 cut(s)	467, 583
BciVI	GTATCC	1 cut(s)	769
BcnI	CCSGG	2 cut(s)	373, 428
BcoDI	GTCTC	2 cut(s)	11, 264
BcuI	ACTAGT	1 cut(s)	479
BfaI	CTAG	5 cut(s)	353, 446, 480, 488, 956
BfuI	GTATCC	1 cut(s)	769
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	5 cut(s)	48, 125, 311, 881, 1011
BlnI	CCTAGG	1 cut(s)	352
BlsI	GCNGC	5 cut(s)	49, 126, 312, 882, 1012
Bme1390I	CCNGG	4 cut(s)	373, 428, 467, 583
BmeT110I	CYCGRG	2 cut(s)	144, 830
BmgBI	CACGTC	1 cut(s)	808
BmiI	GGNNCC	2 cut(s)	91, 1156
BmrFI	CCNGG	4 cut(s)	373, 428, 467, 583
BmsI	GCATC	3 cut(s)	460, 487, 1112
BpiI	GAAGAC	2 cut(s)	47, 372
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	6, 839
BpuMI	CCSGG	2 cut(s)	373, 428
Bsa29I	ATCGAT	1 cut(s)	1106
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	85, 352, 465
Bse1I	ACTGG	1 cut(s)	396
Bse3DI	GCAATG	2 cut(s)	167, 582
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	467, 583
BseCI	ATCGAT	1 cut(s)	1106
BseDI	CCNNGG	3 cut(s)	85, 352, 465
BseGI	GGATG	3 cut(s)	475, 619, 918
BseJI	GATNNNNATC	1 cut(s)	501
BseMI	GCAATG	2 cut(s)	167, 582
BseMII	CTCAG	3 cut(s)	41, 280, 959
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	4 cut(s)	269, 320, 812, 827
BseXI	GCAGC	3 cut(s)	297, 867, 997
Bsh1236I	CGCG	1 cut(s)	885
BshFI	GGCC	3 cut(s)	84, 351, 653
BshVI	ATCGAT	1 cut(s)	1106
BsiHKAI	GWGCWC	3 cut(s)	231, 712, 1062
BsiHKCI	CYCGRG	2 cut(s)	144, 830
BsiSI	CCGG	2 cut(s)	372, 427
BsmAI	GTCTC	2 cut(s)	11, 264
BsnI	GGCC	3 cut(s)	84, 351, 653
Bso31I	GGTCTC	1 cut(s)	264
BsoBI	CYCGRG	2 cut(s)	144, 830
Bsp1286I	GDGCHC	3 cut(s)	231, 712, 1062
Bsp143I	GATC	6 cut(s)	148, 163, 531, 550, 655, 1154
BspACI	CCGC	4 cut(s)	5, 47, 124, 319
BspANI	GGCC	3 cut(s)	84, 351, 653
BspCNI	CTCAG	3 cut(s)	40, 279, 960
BspDI	ATCGAT	1 cut(s)	1106
BspFNI	CGCG	1 cut(s)	885
BspHI	TCATGA	1 cut(s)	1054
BspLI	GGNNCC	2 cut(s)	91, 1156
BspPI	GGATC	3 cut(s)	158, 558, 1149
BspTNI	GGTCTC	1 cut(s)	264
BsrDI	GCAATG	2 cut(s)	167, 582
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	3 cut(s)	85, 352, 465
BssMI	GATC	6 cut(s)	148, 163, 531, 550, 655, 1154
BssT1I	CCWWGG	2 cut(s)	85, 352
Bst2UI	CCWGG	2 cut(s)	467, 583
Bst4CI	ACNGT	2 cut(s)	94, 982
Bst6I	CTCTTC	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	3 cut(s)	27, 266, 968
BstF5I	GGATG	3 cut(s)	475, 619, 918
BstFNI	CGCG	1 cut(s)	885
BstHHI	GCGC	2 cut(s)	885, 1103
BstKTI	GATC	6 cut(s)	151, 166, 534, 553, 658, 1157
BstMAI	GTCTC	2 cut(s)	11, 264
BstMBI	GATC	6 cut(s)	148, 163, 531, 550, 655, 1154
BstMWI	GCNNNNNNNGC	4 cut(s)	316, 449, 506, 952
BstNI	CCWGG	2 cut(s)	467, 583
BstNSI	RCATGY	1 cut(s)	1066
BstSCI	CCNGG	4 cut(s)	371, 426, 465, 581
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	3 cut(s)	297, 867, 997
BstV2I	GAAGAC	2 cut(s)	47, 372
BstX2I	RGATCY	2 cut(s)	148, 1154
BstXI	CCANNNNNNTGG	1 cut(s)	1041
BstYI	RGATCY	2 cut(s)	148, 1154
Bsu15I	ATCGAT	1 cut(s)	1106
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	3 cut(s)	84, 351, 653
BsuTUI	ATCGAT	1 cut(s)	1106
BtrI	CACGTC	1 cut(s)	808
BtsCI	GGATG	3 cut(s)	475, 619, 918
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	475
CciI	TCATGA	1 cut(s)	1054
CfoI	GCGC	2 cut(s)	885, 1103
ClaI	ATCGAT	1 cut(s)	1106
CsiI	ACCWGGT	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	5 cut(s)	649, 1024, 1041, 1055, 1063
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	3 cut(s)	27, 266, 968
DpnI	GATC	6 cut(s)	150, 165, 533, 552, 657, 1156
DpnII	GATC	6 cut(s)	148, 163, 531, 550, 655, 1154
EaeI	YGGCCR	2 cut(s)	82, 651
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	85, 352
Eco31I	GGTCTC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	2 cut(s)	144, 830
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	465, 581
EcoT14I	CCWWGG	2 cut(s)	85, 352
ErhI	CCWWGG	2 cut(s)	85, 352
FaeI	CATG	5 cut(s)	652, 1027, 1044, 1058, 1066
FatI	CATG	5 cut(s)	648, 1023, 1040, 1054, 1062
FauNDI	CATATG	1 cut(s)	1129
Fnu4HI	GCNGC	5 cut(s)	48, 125, 311, 881, 1011
FokI	GGATG	3 cut(s)	482, 626, 905
Fsp4HI	GCNGC	5 cut(s)	48, 125, 311, 881, 1011
FspBI	CTAG	5 cut(s)	353, 446, 480, 488, 956
GlaI	GCGC	2 cut(s)	884, 1102
GluI	GCNGC	5 cut(s)	48, 125, 311, 881, 1011
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	84, 351, 653
HapII	CCGG	2 cut(s)	372, 427
HhaI	GCGC	2 cut(s)	885, 1103
Hin1II	CATG	5 cut(s)	652, 1027, 1044, 1058, 1066
Hin6I	GCGC	2 cut(s)	883, 1101
HinP1I	GCGC	2 cut(s)	883, 1101
HincII	GTYRAC	2 cut(s)	133, 588
HindII	GTYRAC	2 cut(s)	133, 588
HinfI	GANTC	4 cut(s)	19, 368, 701, 940
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	2 cut(s)	372, 427
HphI	GGTGA	1 cut(s)	681
Hpy166II	GTNNAC	3 cut(s)	133, 485, 588
Hpy188I	TCNGA	3 cut(s)	269, 939, 969
Hpy8I	GTNNAC	3 cut(s)	133, 485, 588
HpyAV	CCTTC	3 cut(s)	192, 744, 848
HpyCH4III	ACNGT	2 cut(s)	94, 982
HpyCH4IV	ACGT	1 cut(s)	807
HpyCH4V	TGCA	6 cut(s)	313, 443, 477, 575, 847, 1013
HpyF10VI	GCNNNNNNNGC	4 cut(s)	316, 449, 506, 952
HpyF3I	CTNAG	3 cut(s)	27, 266, 968
HpySE526I	ACGT	1 cut(s)	807
Hsp92II	CATG	5 cut(s)	652, 1027, 1044, 1058, 1066
HspAI	GCGC	2 cut(s)	883, 1101
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	6 cut(s)	148, 163, 531, 550, 655, 1154
LmnI	GCTCC	4 cut(s)	226, 307, 715, 814
Lsp1109I	GCAGC	3 cut(s)	297, 867, 997
LweI	GCATC	3 cut(s)	460, 487, 1112
MabI	ACCWGGT	1 cut(s)	581
MaeI	CTAG	5 cut(s)	353, 446, 480, 488, 956
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	2 cut(s)	698, 781
MalI	GATC	6 cut(s)	150, 165, 533, 552, 657, 1156
MboI	GATC	6 cut(s)	148, 163, 531, 550, 655, 1154
MboII	GAAGA	7 cut(s)	52, 143, 371, 374, 377, 413, 580
MflI	RGATCY	2 cut(s)	148, 1154
MhlI	GDGCHC	3 cut(s)	231, 712, 1062
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	8 cut(s)	340, 422, 544, 715, 789, 869, 948, 1080
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	3 cut(s)	13, 362, 695
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	9 cut(s)	48, 247, 250, 298, 336, 790, 805, 826, 898
Mox20I	TGGCCA	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	2 cut(s)	132, 915
MslI	CAYNNNNRTG	1 cut(s)	1039
Msp20I	TGGCCA	1 cut(s)	84
MspI	CCGG	2 cut(s)	372, 427
MspR9I	CCNGG	4 cut(s)	373, 428, 467, 583
MvaI	CCWGG	2 cut(s)	467, 583
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	4 cut(s)	316, 449, 506, 952
NciI	CCSGG	2 cut(s)	373, 428
NdeI	CATATG	1 cut(s)	1129
NdeII	GATC	6 cut(s)	148, 163, 531, 550, 655, 1154
NlaIII	CATG	5 cut(s)	652, 1027, 1044, 1058, 1066
NlaIV	GGNNCC	2 cut(s)	91, 1156
NmeAIII	GCCGAG	1 cut(s)	1114
NmuCI	GTSAC	1 cut(s)	698
NspI	RCATGY	1 cut(s)	1066
PaeR7I	CTCGAG	2 cut(s)	144, 830
PagI	TCATGA	1 cut(s)	1054
PciI	ACATGT	1 cut(s)	1062
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	940
PkrI	GCNGC	5 cut(s)	49, 126, 312, 882, 1012
PleI	GAGTC	3 cut(s)	13, 362, 695
PpsI	GAGTC	3 cut(s)	13, 362, 695
PscI	ACATGT	1 cut(s)	1062
Psp6I	CCWGG	2 cut(s)	465, 581
PspGI	CCWGG	2 cut(s)	465, 581
PspN4I	GGNNCC	2 cut(s)	91, 1156
PspXI	VCTCGAGB	1 cut(s)	830
PsuI	RGATCY	2 cut(s)	148, 1154
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
RseI	CAYNNNNRTG	1 cut(s)	1039
SaqAI	TTAA	2 cut(s)	132, 915
SatI	GCNGC	5 cut(s)	48, 125, 311, 881, 1011
Sau3AI	GATC	6 cut(s)	148, 163, 531, 550, 655, 1154
SchI	GAGTC	3 cut(s)	13, 362, 695
ScrFI	CCNGG	4 cut(s)	373, 428, 467, 583
SduI	GDGCHC	3 cut(s)	231, 712, 1062
SexAI	ACCWGGT	1 cut(s)	581
SfaNI	GCATC	3 cut(s)	460, 487, 1112
Sfr274I	CTCGAG	2 cut(s)	144, 830
SlaI	CTCGAG	2 cut(s)	144, 830
SmiMI	CAYNNNNRTG	1 cut(s)	1039
SmlI	CTYRAG	4 cut(s)	21, 144, 818, 830
SmoI	CTYRAG	4 cut(s)	21, 144, 818, 830
SpeI	ACTAGT	1 cut(s)	479
Sse9I	AATT	8 cut(s)	340, 422, 544, 715, 789, 869, 948, 1080
SsiI	CCGC	4 cut(s)	5, 47, 124, 319
SspI	AATATT	1 cut(s)	1017
SspMI	CTAG	5 cut(s)	353, 446, 480, 488, 956
StyD4I	CCNGG	4 cut(s)	371, 426, 465, 581
StyI	CCWWGG	2 cut(s)	85, 352
TaaI	ACNGT	2 cut(s)	94, 982
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	7 cut(s)	10, 145, 390, 621, 831, 852, 1106
TasI	AATT	8 cut(s)	340, 422, 544, 715, 789, 869, 948, 1080
TatI	WGTACW	1 cut(s)	458
TauI	GCSGC	2 cut(s)	50, 127
TfiI	GAWTC	1 cut(s)	940
Tru1I	TTAA	2 cut(s)	132, 915
Tru9I	TTAA	2 cut(s)	132, 915
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	3 cut(s)	310, 880, 1010
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	5 cut(s)	57, 630, 1040, 1062, 1116
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	1066
XhoI	CTCGAG	2 cut(s)	144, 830
XmaJI	CCTAGG	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	5 cut(s)	353, 446, 480, 488, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.