Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

33073226 .. 33077411

Gene Structure 4186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0310000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTGGAAAAGACCACTGAAGTTAGGAGATATGAAGGAGGAATTGCAAAAGTACACTTTAATTCAGGAAAGAAAACCAAACCCGCAGCATCGCGCGGGAAGGATTATCTAGTTTTACATATACTAAAGCTCCTACACTGTTCAACTAACAGTGATTTGGCTCCAAGTGATTTGACTCTTTTGTCCTCGCTTCAGATTTTTTTTCCGGCTCTACCTTATCTGGATATATCCTATCTTCGCGTCGAGTCTGGGTTTTGGGTCTCTTGCCTTTGTTTTTGTTCTGATCGAGTTTCCAACCTTGGAATTGATTGTAGGCTATGTAGAAATCTGATGAGTAATCAGCAAAAGAAGAAGCGGTTTCATTTTCAGCAAAAGCAAAATAAGAAAAGCGACCACAATAAAGTTCCTTGGTTTGCTGAGTTCTCCTTTGGTTTGATCAAAGGCTGTGGTTTTGGTGGATTTCGACAGAGTGAGGATTGCAGTAGTTGGAATTCATGGATATATGGGTTTTTTGGTTTAGGGGTTGTGATTGTGTTTCGGATTGGGATTTCGGAATTGATTGAAAAGGCTTTGTTTGTGCTACAGTTTCAACTCTGGGCAATTGATTGCAATACCTTCAAGGTTAGAGCTGCTGAGCTTCGGCAAATACTAGTAGAACTTGGACCGGCGTATATCAAAATCGCTCAGGCTATTTCGTCTCGACCTGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

237

Amino Acids

26.92

Weight (kDa)

9.38

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	181
AccII	CGCG	3 cut(s)	94, 96, 240
AciI	CCGC	3 cut(s)	84, 96, 355
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	2 cut(s)	39, 176
AfaI	GTAC	1 cut(s)	54
AgsI	TTSAA	4 cut(s)	144, 563, 590, 619
AhlI	ACTAGT	1 cut(s)	649
AluBI	AGCT	3 cut(s)	130, 629, 637
AluI	AGCT	3 cut(s)	130, 629, 637
Alw26I	GTCTC	2 cut(s)	265, 702
ApeKI	GCWGC	2 cut(s)	86, 629
ApoI	RAATTY	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	662
BbvI	GCAGC	2 cut(s)	98, 616
BclI	TGATCA	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	265, 702
BcuI	ACTAGT	1 cut(s)	649
BfaI	CTAG	2 cut(s)	110, 650
BfmI	CTRYAG	1 cut(s)	581
BisI	GCNGC	2 cut(s)	87, 630
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	2 cut(s)	88, 631
Bme18I	GGWCC	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	662
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	684
Bpu1102I	GCTNAGC	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	298, 407
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse118I	RCCGGY	1 cut(s)	664
BseDI	CCNNGG	2 cut(s)	298, 407
BseMII	CTCAG	3 cut(s)	408, 624, 698
BseXI	GCAGC	2 cut(s)	98, 616
Bsh1236I	CGCG	3 cut(s)	94, 96, 240
BsiSI	CCGG	2 cut(s)	206, 665
BsmAI	GTCTC	2 cut(s)	265, 702
BsmBI	CGTCTC	1 cut(s)	702
Bso31I	GGTCTC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	283, 435
Bsp1720I	GCTNAGC	1 cut(s)	633
BspACI	CCGC	3 cut(s)	84, 96, 355
BspCNI	CTCAG	3 cut(s)	409, 625, 697
BspFNI	CGCG	3 cut(s)	94, 96, 240
BspLI	GGNNCC	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	664
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	2 cut(s)	298, 407
BssMI	GATC	2 cut(s)	283, 435
BssT1I	CCWWGG	2 cut(s)	298, 407
Bst4CI	ACNGT	3 cut(s)	140, 152, 585
BstDEI	CTNAG	3 cut(s)	417, 633, 684
BstFNI	CGCG	3 cut(s)	94, 96, 240
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	286, 438
BstMAI	GTCTC	2 cut(s)	265, 702
BstMBI	GATC	2 cut(s)	283, 435
BstSFI	CTRYAG	1 cut(s)	581
BstUI	CGCG	3 cut(s)	94, 96, 240
BstV1I	GCAGC	2 cut(s)	98, 616
BtgZI	GCGATG	1 cut(s)	75
BtsIMutI	CAGTG	3 cut(s)	15, 136, 157
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	662
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	1 cut(s)	495
CviJI	RGCY	9 cut(s)	130, 161, 209, 316, 444, 569, 629, 637, 689
CviKI_1	RGCY	9 cut(s)	130, 161, 209, 316, 444, 569, 629, 637, 689
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	3 cut(s)	417, 633, 684
DpnI	GATC	2 cut(s)	285, 437
DpnII	GATC	2 cut(s)	283, 435
DrdI	GACNNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	1 cut(s)	181
Eco130I	CCWWGG	2 cut(s)	298, 407
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	2 cut(s)	39, 176
EcoRI	GAATTC	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	298, 407
ErhI	CCWWGG	2 cut(s)	298, 407
Esp3I	CGTCTC	1 cut(s)	702
FaeI	CATG	1 cut(s)	498
FaiI	YATR	9 cut(s)	33, 120, 122, 227, 319, 496, 502, 504, 672
FatI	CATG	1 cut(s)	494
FauI	CCCGC	2 cut(s)	89, 91
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	87, 630
Fsp4HI	GCNGC	2 cut(s)	87, 630
FspBI	CTAG	2 cut(s)	110, 650
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	2 cut(s)	87, 630
HapII	CCGG	2 cut(s)	206, 665
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	498
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	175, 245
HpaII	CCGG	2 cut(s)	206, 665
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	5 cut(s)	195, 283, 330, 540, 553
Hpy188III	TCNNGA	3 cut(s)	66, 221, 699
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	3 cut(s)	29, 94, 625
HpyCH4III	ACNGT	3 cut(s)	140, 152, 585
HpyCH4V	TGCA	3 cut(s)	47, 480, 609
HpyF3I	CTNAG	3 cut(s)	417, 633, 684
Hsp92II	CATG	1 cut(s)	498
HspAI	GCGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	2 cut(s)	283, 435
LmnI	GCTCC	2 cut(s)	135, 166
LpnPI	CCDG	7 cut(s)	51, 206, 219, 234, 580, 671, 678
Lsp1109I	GCAGC	2 cut(s)	98, 616
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	110, 650
MalI	GATC	2 cut(s)	285, 437
MboI	GATC	2 cut(s)	283, 435
MboII	GAAGA	2 cut(s)	227, 361
MfeI	CAATTG	1 cut(s)	600
MluCI	AATT	6 cut(s)	42, 61, 303, 490, 554, 600
MlyI	GAGTC	2 cut(s)	169, 254
MmeI	TCCRAC	2 cut(s)	318, 467
MnlI	CCTC	3 cut(s)	32, 196, 466
MseI	TTAA	1 cut(s)	60
MspI	CCGG	2 cut(s)	206, 665
MunI	CAATTG	1 cut(s)	600
MvnI	CGCG	3 cut(s)	94, 96, 240
NdeII	GATC	2 cut(s)	283, 435
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	88, 631
PleI	GAGTC	2 cut(s)	169, 253
PpsI	GAGTC	2 cut(s)	169, 253
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	662
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	87, 630
Sau3AI	GATC	2 cut(s)	283, 435
Sau96I	GGNCC	1 cut(s)	662
SchI	GAGTC	2 cut(s)	169, 254
SetI	ASST	8 cut(s)	132, 217, 300, 617, 624, 631, 639, 706
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	581
SinI	GGWCC	1 cut(s)	662
SpeI	ACTAGT	1 cut(s)	649
Sse9I	AATT	6 cut(s)	42, 61, 303, 490, 554, 600
SsiI	CCGC	3 cut(s)	84, 96, 355
SspMI	CTAG	2 cut(s)	110, 650
StyI	CCWWGG	2 cut(s)	298, 407
TaaI	ACNGT	3 cut(s)	140, 152, 585
TaqI	TCGA	4 cut(s)	243, 286, 463, 700
TasI	AATT	6 cut(s)	42, 61, 303, 490, 554, 600
TatI	WGTACW	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	3 cut(s)	22, 143, 157
TseI	GCWGC	2 cut(s)	86, 629
TspDTI	ATGAA	3 cut(s)	48, 350, 483
TspRI	CASTG	3 cut(s)	22, 143, 157
VpaK11BI	GGWCC	1 cut(s)	662
XapI	RAATTY	1 cut(s)	490
XspI	CTAG	2 cut(s)	110, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.