Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

4671944 .. 4675598

Gene Structure 3655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36283

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCAGAGAGTCCACATTCACGCTCGGGATCTCCGCATTGTCGACCCTCTGCTTTCTTACCCTTCCGCCATTCTCGGACGTGACAGGGCTATTGTTCTCAATCTGGAGCATATTAAAGCGATAATTACTGCTGAAGAGGTGCTGCTTCGGGATCCGTTGGATGAAAATGTTATTCCAATTGTTGAAGAGCTTCAGAGACGGTTGCCTCCTGTAAATTCCAACCGTGAAAATCAAACAGATGGAAGTGAGTTCCCTGTTGACGCGGCTGAAGAAGATGGTATGTCTTCATTTGAATTCCGGGCCTTGGAGGTAGCCTTGGAAGTAATTTGTAGTTTTCTTGCTGCACGTACGACAGAACTGGAGACTGCTGCTTATCCGGCTCTAGATTTGCTTACCTCTAAGATTAGTAGCCACAATTTGGATAGGGTTCGTAAATTGAAAAGTGCAATGACAAGGTTGACTGCACGGGTCCAAAAGGTGAGGGATGAGCTCGAGCAGCTGCTGGATGATGATGATGATGATATGGCCGACCTTTACTTGTCAAGAAAGTTGGCGGGTGCATGTTCACCAGTTAGTGCCTCTGGTCCTCCCAATTGGTATCCTGCCTCCCCTACCATAGGCTCAATATCACGGGCAAGCAGAGCAAGTATGGTAACTGGTCGTGGAGATGAGAATGACGTTGACGAACTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGCACCTTGAACAAGTTAGCTACGCTGCGTGAATATATTGATGATACGGAGGATTACATAAATATTCAGCTCGATAACCACAGGAATCAGTTAATTCAGCTTGAGCTTATTCTTAGTTCTGGAACTGTTGGTTTATCCATGTATTCTTTGGTGTGTGGAATTTTTGGCGTGAATATCCCATATTCGTGGAACCAGGATCATGGATACATGTTTAAATGGGTTTGGATTGTCACAGGAATAGTATGTTTCTCTGTTTTCATAGTAATTGTAGCATATGCTCGCCACAAAGGGTTGGTCGGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

343

Amino Acids

38.43

Weight (kDa)

4.76

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	2 - 184	5.1e-22	Magnesium transporter MRS2-like
MRS2-like	PF22099	223 - 270	5.3e-08	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	728
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	263
AciI	CCGC	4 cut(s)	34, 66, 263, 554
AclWI	GGATC	4 cut(s)	36, 146, 159, 930
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	3 cut(s)	214, 293, 885
AcuI	CTGAAG	3 cut(s)	153, 176, 288
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	3 cut(s)	304, 418, 617
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	5 cut(s)	185, 293, 439, 692, 736
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	918
AluBI	AGCT	7 cut(s)	190, 490, 499, 746, 796, 826, 832
AluI	AGCT	7 cut(s)	190, 490, 499, 746, 796, 826, 832
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	2 cut(s)	190, 356
AlwI	GGATC	4 cut(s)	36, 146, 159, 930
AlwNI	CAGNNNCTG	1 cut(s)	502
Ama87I	CYCGRG	2 cut(s)	24, 491
AoxI	GGCC	2 cut(s)	300, 525
ApeKI	GCWGC	6 cut(s)	142, 341, 368, 496, 499, 751
ApoI	RAATTY	3 cut(s)	214, 293, 885
ArsI	GACNNNNNNTTYG	1 cut(s)	1005
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	3 cut(s)	300, 469, 584
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	490, 558
AvaI	CYCGRG	2 cut(s)	24, 491
AvaII	GGWCC	2 cut(s)	469, 584
BamHI	GGATCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	6 cut(s)	129, 328, 355, 486, 508, 738
BccI	CCATC	3 cut(s)	233, 269, 719
BciT130I	CCWGG	1 cut(s)	920
BciVI	GTATCC	2 cut(s)	609, 923
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	190, 356
BfaI	CTAG	1 cut(s)	383
BfuI	GTATCC	2 cut(s)	609, 923
BisI	GCNGC	7 cut(s)	143, 264, 342, 369, 497, 500, 752
BlsI	GCNGC	7 cut(s)	144, 265, 343, 370, 498, 501, 753
Bme1390I	CCNGG	2 cut(s)	299, 920
Bme18I	GGWCC	2 cut(s)	469, 584
BmeT110I	CYCGRG	2 cut(s)	24, 491
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	300, 469, 584
BmiI	GGNNCC	4 cut(s)	153, 470, 730, 917
BmrFI	CCNGG	2 cut(s)	299, 920
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	3 cut(s)	125, 380, 722
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	1 cut(s)	299
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	303, 315
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 418, 617
Bse1I	ACTGG	4 cut(s)	363, 569, 661, 705
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	920
BseDI	CCNNGG	2 cut(s)	303, 315
BseGI	GGATG	3 cut(s)	166, 490, 511
BseLI	CCNNNNNNNGG	3 cut(s)	304, 418, 617
BseMI	GCAATG	1 cut(s)	453
BseNI	ACTGG	4 cut(s)	363, 569, 661, 705
BseXI	GCAGC	6 cut(s)	129, 328, 355, 486, 508, 738
BsgI	GTGCAG	2 cut(s)	327, 447
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	302, 527
BshNI	GGYRCC	1 cut(s)	728
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	2 cut(s)	24, 491
BsiSI	CCGG	2 cut(s)	298, 377
BsiWI	CGTACG	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	304, 418, 617
BsmAI	GTCTC	2 cut(s)	190, 356
BsmBI	CGTCTC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	302, 527
BsoBI	CYCGRG	2 cut(s)	24, 491
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	28, 151, 922, 1025
BspACI	CCGC	4 cut(s)	34, 66, 263, 554
BspANI	GGCC	2 cut(s)	302, 527
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	4 cut(s)	153, 470, 730, 917
BspPI	GGATC	4 cut(s)	36, 146, 159, 930
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	4 cut(s)	363, 569, 661, 705
BssECI	CCNNGG	2 cut(s)	303, 315
BssMI	GATC	4 cut(s)	28, 151, 922, 1025
BssT1I	CCWWGG	2 cut(s)	303, 315
Bst2UI	CCWGG	1 cut(s)	920
Bst4CI	ACNGT	3 cut(s)	201, 224, 853
Bst6I	CTCTTC	2 cut(s)	129, 180
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	637, 1006
BstDEI	CTNAG	2 cut(s)	399, 839
BstENI	CCTNNNNNAGG	1 cut(s)	615
BstF5I	GGATG	3 cut(s)	166, 490, 511
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	4 cut(s)	31, 154, 925, 1028
BstMAI	GTCTC	2 cut(s)	190, 356
BstMBI	GATC	4 cut(s)	28, 151, 922, 1025
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 496, 641
BstNI	CCWGG	1 cut(s)	920
BstNSI	RCATGY	2 cut(s)	564, 937
BstSCI	CCNGG	2 cut(s)	297, 918
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	6 cut(s)	129, 328, 355, 486, 508, 738
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	28, 151
BstXI	CCANNNNNNTGG	2 cut(s)	912, 926
BstYI	RGATCY	2 cut(s)	28, 151
BsuI	GTATCC	2 cut(s)	609, 923
BsuRI	GGCC	2 cut(s)	302, 527
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	166, 490, 511
Cac8I	GCNNGC	2 cut(s)	637, 1006
CaiI	CAGNNNCTG	1 cut(s)	502
Cfr13I	GGNCC	3 cut(s)	300, 469, 584
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	4 cut(s)	561, 865, 926, 934
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	2 cut(s)	399, 839
DpnI	GATC	4 cut(s)	30, 153, 924, 1027
DpnII	GATC	4 cut(s)	28, 151, 922, 1025
DraI	TTTAAA	1 cut(s)	940
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	129, 180
EarI	CTCTTC	2 cut(s)	129, 180
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	2 cut(s)	303, 315
Eco24I	GRGCYC	1 cut(s)	492
Eco47I	GGWCC	2 cut(s)	469, 584
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	3 cut(s)	153, 176, 288
Eco88I	CYCGRG	2 cut(s)	24, 491
EcoICRI	GAGCTC	1 cut(s)	490
EcoNI	CCTNNNNNAGG	1 cut(s)	615
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	918
EcoT14I	CCWWGG	2 cut(s)	303, 315
EcoT38I	GRGCYC	1 cut(s)	492
ErhI	CCWWGG	2 cut(s)	303, 315
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	4 cut(s)	564, 868, 929, 937
FatI	CATG	4 cut(s)	560, 864, 925, 933
FauI	CCCGC	1 cut(s)	547
FauNDI	CATATG	1 cut(s)	1000
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	7 cut(s)	143, 264, 342, 369, 497, 500, 752
FokI	GGATG	3 cut(s)	173, 497, 518
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	7 cut(s)	143, 264, 342, 369, 497, 500, 752
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	7 cut(s)	143, 264, 342, 369, 497, 500, 752
GsuI	CTGGAG	3 cut(s)	125, 380, 722
HaeIII	GGCC	2 cut(s)	302, 527
HapII	CCGG	2 cut(s)	298, 377
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	564, 868, 929, 937
HincII	GTYRAC	4 cut(s)	43, 259, 459, 682
HindII	GTYRAC	4 cut(s)	43, 259, 459, 682
HinfI	GANTC	2 cut(s)	9, 811
HpaII	CCGG	2 cut(s)	298, 377
HphI	GGTGA	2 cut(s)	490, 558
Hpy166II	GTNNAC	6 cut(s)	13, 43, 259, 459, 566, 682
Hpy188I	TCNGA	3 cut(s)	77, 195, 1025
Hpy188III	TCNNGA	7 cut(s)	26, 104, 149, 383, 543, 846, 1029
Hpy8I	GTNNAC	6 cut(s)	13, 43, 259, 459, 566, 682
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	3 cut(s)	201, 224, 853
HpyCH4IV	ACGT	3 cut(s)	79, 346, 678
HpyCH4V	TGCA	6 cut(s)	4, 344, 446, 464, 560, 718
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 496, 641
HpyF3I	CTNAG	2 cut(s)	399, 839
HpySE526I	ACGT	3 cut(s)	79, 346, 678
Hsp92II	CATG	4 cut(s)	564, 868, 929, 937
Kzo9I	GATC	4 cut(s)	28, 151, 922, 1025
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	6 cut(s)	129, 328, 355, 486, 508, 738
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	3 cut(s)	79, 346, 678
MaeIII	GTNAC	4 cut(s)	80, 652, 696, 955
MalI	GATC	4 cut(s)	30, 153, 924, 1027
MboI	GATC	4 cut(s)	28, 151, 922, 1025
MboII	GAAGA	5 cut(s)	146, 197, 276, 281, 284
MfeI	CAATTG	2 cut(s)	177, 592
MflI	RGATCY	2 cut(s)	28, 151
MhlI	GDGCHC	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	3 cut(s)	138, 243, 1003
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	3 cut(s)	114, 818, 939
MslI	CAYNNNNRTG	1 cut(s)	910
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	2 cut(s)	298, 377
MspR9I	CCNGG	2 cut(s)	299, 920
MunI	CAATTG	2 cut(s)	177, 592
MvaI	CCWGG	1 cut(s)	920
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	377, 496, 641
NciI	CCSGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	4 cut(s)	28, 151, 922, 1025
NlaIII	CATG	4 cut(s)	564, 868, 929, 937
NlaIV	GGNNCC	4 cut(s)	153, 470, 730, 917
NmuCI	GTSAC	2 cut(s)	80, 955
NspI	RCATGY	2 cut(s)	564, 937
PaeR7I	CTCGAG	1 cut(s)	491
PciI	ACATGT	1 cut(s)	933
PciSI	GCTCTTC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	811
Pfl23II	CGTACG	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	418
PkrI	GCNGC	7 cut(s)	144, 265, 343, 370, 498, 501, 753
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Ppu21I	YACGTR	1 cut(s)	347
PscI	ACATGT	1 cut(s)	933
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	918
PspGI	CCWGG	1 cut(s)	918
PspLI	CGTACG	1 cut(s)	347
PspN4I	GGNNCC	4 cut(s)	153, 470, 730, 917
PspPI	GGNCC	3 cut(s)	300, 469, 584
PspXI	VCTCGAGB	1 cut(s)	491
PstNI	CAGNNNCTG	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	28, 151
PvuII	CAGCTG	1 cut(s)	499
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	910
SacI	GAGCTC	1 cut(s)	492
SalI	GTCGAC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	114, 818, 939
SatI	GCNGC	7 cut(s)	143, 264, 342, 369, 497, 500, 752
Sau3AI	GATC	4 cut(s)	28, 151, 922, 1025
Sau96I	GGNCC	3 cut(s)	300, 469, 584
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	299, 920
SduI	GDGCHC	1 cut(s)	492
Sfr274I	CTCGAG	1 cut(s)	491
SinI	GGWCC	2 cut(s)	469, 584
SlaI	CTCGAG	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	910
SmlI	CTYRAG	2 cut(s)	491, 827
SmoI	CTYRAG	2 cut(s)	491, 827
SsiI	CCGC	4 cut(s)	34, 66, 263, 554
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	1 cut(s)	383
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	297, 918
StyI	CCWWGG	2 cut(s)	303, 315
TaaI	ACNGT	3 cut(s)	201, 224, 853
TaiI	ACGT	3 cut(s)	82, 349, 681
TaqI	TCGA	3 cut(s)	42, 492, 798
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	811
Tru1I	TTAA	3 cut(s)	114, 818, 939
Tru9I	TTAA	3 cut(s)	114, 818, 939
TseFI	GTSAC	2 cut(s)	80, 955
TseI	GCWGC	6 cut(s)	142, 341, 368, 496, 499, 751
Tsp45I	GTSAC	2 cut(s)	80, 955
TspDTI	ATGAA	3 cut(s)	177, 276, 973
TspGWI	ACGGA	2 cut(s)	144, 788
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	469, 584
XagI	CCTNNNNNAGG	1 cut(s)	615
XapI	RAATTY	3 cut(s)	214, 293, 885
XbaI	TCTAGA	1 cut(s)	382
XceI	RCATGY	2 cut(s)	564, 937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	871
XhoI	CTCGAG	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.