Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Reverse (-)

18346624 .. 18349716

Gene Structure 3093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22370.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCTGAAGAGTGCAATGACCAGGTTGACAAATCGGGTTCAAAAAGTATGGGATAAACTCGAACAGCTTCTTGACGATGACGATAACATGGCCGATCTTTACATATCAAGAAAGTTGGTTGGCACTTCACCTGTGAGTGACTCTGGTGCTCCAAATTGGTCTTTCGCATCTCCTTCTATAACCATCGGCTCTAAAGTATCCAGAACCAGCAGGGCAAGTGTAACAACAATTCAGGAGGAGAATGACGTGGAGGAGCTTGAGATGTTGCCCGAGGCTTACTTTATGCAAATCGAAGGAACATTGAATAAATTGACCACGCTGCGCGAATACATTGATGACACAGAGGATTACATTAACATCCAGCTTGACAATCATCGGAATCAGCTAATTCTGCTAGAGCTGTTTCTGAGTTCTGGAACTGTTTGTGTGTCTATATACTCTTTGGTGGCTGCAATATATTTGGCATGTACATTCCATATACATGGAATGAAAATCATGAGCACATGTTCAAATGGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

174

Amino Acids

19.51

Weight (kDa)

4.71

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	65 - 113	1.9e-06	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	469
AflIII	ACRYGT	1 cut(s)	503
AgsI	TTSAA	3 cut(s)	41, 304, 510
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	5 cut(s)	67, 256, 364, 385, 400
AluI	AGCT	5 cut(s)	67, 256, 364, 385, 400
Alw21I	GWGCWC	2 cut(s)	151, 503
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	319, 449
Asp700I	GAANNNNTTC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	120
AvaI	CYCGRG	1 cut(s)	269
Bbv12I	GWGCWC	2 cut(s)	151, 503
BbvI	GCAGC	2 cut(s)	306, 436
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	22
BciVI	GTATCC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	320, 450
BlsI	GCNGC	2 cut(s)	321, 451
Bme1390I	CCNGG	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	251, 266
BseXI	GCAGC	2 cut(s)	306, 436
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	151, 503
BsiHKCI	CYCGRG	1 cut(s)	269
BsnI	GGCC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	151, 503
Bsp1407I	TGTACA	1 cut(s)	467
Bsp143I	GATC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	2
BstAUI	TGTACA	1 cut(s)	467
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	2 cut(s)	468, 507
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	306, 436
BstXI	CCANNNNNNTGG	1 cut(s)	482
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	92
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	357
CciI	TCATGA	1 cut(s)	495
CfoI	GCGC	1 cut(s)	324
CsiI	ACCWGGT	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	5 cut(s)	88, 465, 482, 496, 504
CviJI	RGCY	9 cut(s)	67, 92, 189, 256, 275, 364, 385, 400, 449
CviKI_1	RGCY	9 cut(s)	67, 92, 189, 256, 275, 364, 385, 400, 449
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco57I	CTGAAG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	20
FaeI	CATG	5 cut(s)	91, 468, 485, 499, 507
FatI	CATG	5 cut(s)	87, 464, 481, 495, 503
Fnu4HI	GCNGC	2 cut(s)	320, 450
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	320, 450
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	2 cut(s)	320, 450
HaeIII	GGCC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	5 cut(s)	91, 468, 485, 499, 507
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	140, 379
HphI	GGTGA	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	2 cut(s)	378, 408
Hpy188III	TCNNGA	6 cut(s)	71, 108, 201, 233, 414, 496
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	2 cut(s)	183, 287
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	14, 286, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	91, 468, 485, 499, 507
HspAI	GCGC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	154, 253
Lsp1109I	GCAGC	2 cut(s)	306, 436
LweI	GCATC	1 cut(s)	176
MabI	ACCWGGT	1 cut(s)	20
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	137, 220
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	151, 503
MluCI	AATT	4 cut(s)	154, 228, 308, 387
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	4 cut(s)	229, 244, 265, 337
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	391
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	5 cut(s)	91, 468, 485, 499, 507
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	2 cut(s)	468, 507
PagI	TCATGA	1 cut(s)	495
PciI	ACATGT	1 cut(s)	503
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	321, 451
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PscI	ACATGT	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	320, 450
Sau3AI	GATC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	151, 503
SetI	ASST	8 cut(s)	26, 69, 133, 249, 258, 366, 387, 402
SexAI	ACCWGGT	1 cut(s)	20
SfaNI	GCATC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	4 cut(s)	154, 228, 308, 387
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	60, 291
TasI	AATT	4 cut(s)	154, 228, 308, 387
TatI	WGTACW	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	319, 449
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	503
XceI	RCATGY	2 cut(s)	468, 507
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.