Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007419.1

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

46261 .. 49370

Gene Structure 3110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007419.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgacaaggttgactgcacgggtccaaaaggtgagggatgagctcgagcagctgctggatgatgatgatgatatggccgacctttacttgtcaagaaagttggtgggtgcatgttcaccagttagtgcctctggtcctcccaattggtatcctgcctcccctaccataggctcaaaaatatcacgggcaagtagagcaagtatgataactgttcgtggagatgagaatgacgttgaggaacttgaaatgttactggaggcttactttatgcagattgatggcaccttgaacaagttagctacgctgcgtgaatatattgatgatacggaggattacataaatattcagcttgataaccataggaatcagttaattcagcttgagctttttcttagttctggaactgttaccttatccatatattctttggtggctggaatttttggcatgaatatcccatatacgtggaacgatggtcatggatacatgtttaaatgggtttgcattgtcaccggaatagtatgtttctttgttttcatagtaattgtagcatatgctcgccacaaaggtttggatgacttgtcgcctaagaaacctaggctgagtttagcggttggcaagaccaacttggatgctgtgtcaatggggcttgccttggtggctactacacaagaggctaaaaaaaaaaaaggtaccttgcaggtgcatcctaagaacaagaaaacaattgaggttaaggcaaagaagacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

250

Amino Acids

27.91

Weight (kDa)

6.91

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	691
Acc36I	ACCTGC	1 cut(s)	691
Acc65I	GGTACC	1 cut(s)	692
AccB1I	GGYRCC	2 cut(s)	281, 692
AciI	CCGC	1 cut(s)	611
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	438
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	245, 289
AluBI	AGCT	6 cut(s)	43, 52, 299, 349, 379, 385
AluI	AGCT	6 cut(s)	43, 52, 299, 349, 379, 385
Alw21I	GWGCWC	1 cut(s)	45
AlwNI	CAGNNNCTG	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	3 cut(s)	49, 52, 304
ApoI	RAATTY	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	692
AspA2I	CCTAGG	1 cut(s)	596
AspS9I	GGNCC	2 cut(s)	22, 134
AsuHPI	GGTGA	3 cut(s)	43, 108, 502
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	22, 134
AvrII	CCTAGG	1 cut(s)	596
BanI	GGYRCC	2 cut(s)	281, 692
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	39, 61, 291
BccI	CCATC	2 cut(s)	272, 467
BciVI	GTATCC	2 cut(s)	159, 476
BfaI	CTAG	2 cut(s)	597, 751
BfuAI	ACCTGC	1 cut(s)	691
BfuI	GTATCC	2 cut(s)	159, 476
BglI	GCCNNNNNGGC	1 cut(s)	659
BisI	GCNGC	3 cut(s)	50, 53, 305
BlnI	CCTAGG	1 cut(s)	596
BlsI	GCNGC	3 cut(s)	51, 54, 306
Bme18I	GGWCC	2 cut(s)	22, 134
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	22, 134
BmiI	GGNNCC	3 cut(s)	23, 283, 694
BmsI	GCATC	2 cut(s)	622, 715
BpmI	CTGGAG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	465
BsaJI	CCNNGG	2 cut(s)	596, 654
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	119, 258
BseDI	CCNNGG	2 cut(s)	596, 654
BseGI	GGATG	5 cut(s)	43, 64, 580, 637, 706
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	2 cut(s)	119, 258
BseXI	GCAGC	3 cut(s)	39, 61, 291
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	2 cut(s)	281, 692
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	611
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	594
BspLI	GGNNCC	3 cut(s)	23, 283, 694
BspMI	ACCTGC	1 cut(s)	691
BspT107I	GGYRCC	2 cut(s)	281, 692
BsrI	ACTGG	2 cut(s)	119, 258
BssECI	CCNNGG	2 cut(s)	596, 654
BssT1I	CCWWGG	2 cut(s)	596, 654
Bst4CI	ACNGT	2 cut(s)	211, 406
BstBAI	YACGTR	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	559, 651
BstDEI	CTNAG	4 cut(s)	392, 588, 602, 711
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstF5I	GGATG	5 cut(s)	43, 64, 580, 637, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 194, 659
BstNSI	RCATGY	2 cut(s)	114, 490
BstV1I	GCAGC	3 cut(s)	39, 61, 291
BstXI	CCANNNNNNTGG	1 cut(s)	465
BsuI	GTATCC	2 cut(s)	159, 476
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	5 cut(s)	43, 64, 580, 637, 706
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	2 cut(s)	559, 651
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	22, 134
Csp6I	GTAC	1 cut(s)	693
CviAII	CATG	4 cut(s)	111, 448, 479, 487
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	4 cut(s)	392, 588, 602, 711
DraI	TTTAAA	1 cut(s)	493
EaeI	YGGCCR	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	596, 654
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	22, 134
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	596, 654
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	2 cut(s)	596, 654
FaeI	CATG	4 cut(s)	114, 451, 482, 490
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FatI	CATG	4 cut(s)	110, 447, 478, 486
FauNDI	CATATG	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	50, 53, 305
FokI	GGATG	5 cut(s)	50, 71, 587, 644, 693
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	50, 53, 305
FspBI	CTAG	2 cut(s)	597, 751
GluI	GCNGC	3 cut(s)	50, 53, 305
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	513
Hin1II	CATG	4 cut(s)	114, 451, 482, 490
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	3 cut(s)	43, 108, 502
Hpy166II	GTNNAC	2 cut(s)	12, 116
Hpy188III	TCNNGA	2 cut(s)	93, 399
Hpy8I	GTNNAC	2 cut(s)	12, 116
HpyCH4III	ACNGT	2 cut(s)	211, 406
HpyCH4IV	ACGT	2 cut(s)	231, 464
HpyCH4V	TGCA	6 cut(s)	17, 110, 271, 504, 700, 706
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 194, 659
HpyF3I	CTNAG	4 cut(s)	392, 588, 602, 711
HpySE526I	ACGT	2 cut(s)	231, 464
Hsp92II	CATG	4 cut(s)	114, 451, 482, 490
KpnI	GGTACC	1 cut(s)	696
LpnPI	CCDG	9 cut(s)	41, 117, 132, 165, 239, 384, 420, 526, 686
Lsp1109I	GCAGC	3 cut(s)	39, 61, 291
LweI	GCATC	2 cut(s)	622, 715
MaeI	CTAG	2 cut(s)	597, 751
MaeII	ACGT	2 cut(s)	231, 464
MaeIII	GTNAC	3 cut(s)	249, 406, 508
MfeI	CAATTG	2 cut(s)	142, 726
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	5 cut(s)	142, 372, 438, 543, 726
MnlI	CCTC	9 cut(s)	27, 139, 147, 166, 229, 250, 322, 667, 724
MseI	TTAA	3 cut(s)	371, 492, 735
MslI	CAYNNNNRTG	1 cut(s)	463
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	1 cut(s)	513
MunI	CAATTG	2 cut(s)	142, 726
MwoI	GCNNNNNNNGC	3 cut(s)	49, 194, 659
NdeI	CATATG	1 cut(s)	553
NlaIII	CATG	4 cut(s)	114, 451, 482, 490
NlaIV	GGNNCC	3 cut(s)	23, 283, 694
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	2 cut(s)	114, 490
PaeR7I	CTCGAG	1 cut(s)	44
PaqCI	CACCTGC	1 cut(s)	691
PciI	ACATGT	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	51, 54, 306
Ppu21I	YACGTR	1 cut(s)	465
PscI	ACATGT	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	3 cut(s)	23, 283, 694
PspPI	GGNCC	2 cut(s)	22, 134
PspXI	VCTCGAGB	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
RseI	CAYNNNNRTG	1 cut(s)	463
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	371, 492, 735
SatI	GCNGC	3 cut(s)	50, 53, 305
Sau96I	GGNCC	2 cut(s)	22, 134
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	2 cut(s)	622, 715
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	22, 134
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	463
SmlI	CTYRAG	2 cut(s)	44, 380
SmoI	CTYRAG	2 cut(s)	44, 380
Sse9I	AATT	5 cut(s)	142, 372, 438, 543, 726
SsiI	CCGC	1 cut(s)	611
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	597, 751
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	596, 654
TaaI	ACNGT	2 cut(s)	211, 406
TaiI	ACGT	2 cut(s)	234, 467
TaqI	TCGA	1 cut(s)	45
TasI	AATT	5 cut(s)	142, 372, 438, 543, 726
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	3 cut(s)	371, 492, 735
Tru9I	TTAA	3 cut(s)	371, 492, 735
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	3 cut(s)	49, 52, 304
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	464, 526
TspGWI	ACGGA	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	22, 134
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	2 cut(s)	114, 490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	44
XmaJI	CCTAGG	1 cut(s)	596
XspI	CTAG	2 cut(s)	597, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.